Genetic relatedness of the novel human group C betacoronavirus to Tylonycteris bat coronavirus HKU4 and Pipistrellus bat coronavirus HKU5
Identifieur interne : 001D19 ( Main/Exploration ); précédent : 001D18; suivant : 001D20Genetic relatedness of the novel human group C betacoronavirus to Tylonycteris bat coronavirus HKU4 and Pipistrellus bat coronavirus HKU5
Auteurs : Patrick Cy Woo [République populaire de Chine] ; Susanna Kp Lau [République populaire de Chine] ; Kenneth Sm Li [République populaire de Chine] ; Alan Kl Tsang [République populaire de Chine] ; Kwok-Yung Yuen [République populaire de Chine]Source :
- Emerging Microbes & Infections [ 2222-1751 ] ; 2012.
Abstract
The recent outbreak of severe respiratory infections associated with a novel group C betacoronavirus (HCoV-EMC) from Saudi Arabia has drawn global attention to another highly probable “SARS-like” animal-to-human interspecies jumping event in coronavirus (CoV). The genome of HCoV-EMC is most closely related to
Url:
DOI: 10.1038/emi.2012.45
PubMed: 26038405
PubMed Central: 3630921
Affiliations:
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HKU5</title><author><name sortKey="Woo, Patrick Cy" sort="Woo, Patrick Cy" uniqKey="Woo P" first="Patrick Cy" last="Woo">Patrick Cy Woo</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Department of Microbiology, The University of Hong Kong</institution>, Hong Kong, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>, Hong Kong</wicri:regionArea><wicri:noRegion>Hong Kong</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="aff2"><institution>State Key Laboratory of Emerging Infectious Diseases, The University of Hong Kong</institution>, Hong Kong, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>, Hong Kong</wicri:regionArea><wicri:noRegion>Hong Kong</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="aff3"><institution>Research Centre of Infection and Immunology, The University of Hong Kong</institution>, Hong Kong, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>, Hong Kong</wicri:regionArea><wicri:noRegion>Hong Kong</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="aff4"><institution>Carol Yu Centre for Infection, The University of Hong Kong</institution>, Hong Kong, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>, Hong Kong</wicri:regionArea><wicri:noRegion>Hong Kong</wicri:noRegion></affiliation></author><author><name sortKey="Lau, Susanna Kp" sort="Lau, Susanna Kp" uniqKey="Lau S" first="Susanna Kp" last="Lau">Susanna Kp Lau</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Department of Microbiology, The University of Hong Kong</institution>, Hong Kong, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>, Hong Kong</wicri:regionArea><wicri:noRegion>Hong Kong</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="aff2"><institution>State Key Laboratory of Emerging Infectious Diseases, The University of Hong Kong</institution>, Hong Kong, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>, Hong Kong</wicri:regionArea><wicri:noRegion>Hong Kong</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="aff3"><institution>Research Centre of Infection and Immunology, The University of Hong Kong</institution>, Hong Kong, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>, Hong Kong</wicri:regionArea><wicri:noRegion>Hong Kong</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="aff4"><institution>Carol Yu Centre for Infection, The University of Hong Kong</institution>, Hong Kong, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>, Hong Kong</wicri:regionArea><wicri:noRegion>Hong Kong</wicri:noRegion></affiliation></author><author><name sortKey="Li, Kenneth Sm" sort="Li, Kenneth Sm" uniqKey="Li K" first="Kenneth Sm" last="Li">Kenneth Sm Li</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Department of Microbiology, The University of Hong Kong</institution>, Hong Kong, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>, Hong Kong</wicri:regionArea><wicri:noRegion>Hong Kong</wicri:noRegion></affiliation></author><author><name sortKey="Tsang, Alan Kl" sort="Tsang, Alan Kl" uniqKey="Tsang A" first="Alan Kl" last="Tsang">Alan Kl Tsang</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Department of Microbiology, The University of Hong Kong</institution>, Hong Kong, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>, Hong Kong</wicri:regionArea><wicri:noRegion>Hong Kong</wicri:noRegion></affiliation></author><author><name sortKey="Yuen, Kwok Yung" sort="Yuen, Kwok Yung" uniqKey="Yuen K" first="Kwok-Yung" last="Yuen">Kwok-Yung Yuen</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Department of Microbiology, The University of Hong Kong</institution>, Hong Kong, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>, Hong Kong</wicri:regionArea><wicri:noRegion>Hong Kong</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="aff2"><institution>State Key Laboratory of Emerging Infectious Diseases, The University of Hong Kong</institution>, Hong Kong, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>, Hong Kong</wicri:regionArea><wicri:noRegion>Hong Kong</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="aff3"><institution>Research Centre of Infection and Immunology, The University of Hong Kong</institution>, Hong Kong, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>, Hong Kong</wicri:regionArea><wicri:noRegion>Hong Kong</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="aff4"><institution>Carol Yu Centre for Infection, The University of Hong Kong</institution>, Hong Kong, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>, Hong Kong</wicri:regionArea><wicri:noRegion>Hong Kong</wicri:noRegion></affiliation></author></analytic><series><title level="j">Emerging Microbes & Infections</title><idno type="eISSN">2222-1751</idno><imprint><date when="2012">2012</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>The recent outbreak of severe respiratory infections associated with a novel group C betacoronavirus (HCoV-EMC) from Saudi Arabia has drawn global attention to another highly probable “SARS-like” animal-to-human interspecies jumping event in coronavirus (CoV). The genome of HCoV-EMC is most closely related to <italic>Tylonycteris</italic> bat coronavirus HKU4 (Ty-BatCoV HKU4) and <italic>Pipistrellus</italic> bat coronavirus HKU5 (Pi-BatCoV HKU5) we discovered in 2006. Phylogenetically, HCoV-EMC is clustered with Ty-BatCoV HKU4/Pi-BatCoV HKU5 with high bootstrap supports, indicating that HCoV-EMC is a group C betaCoV. The major difference between HCoV-EMC and Ty-BatCoV HKU4/Pi-BatCoV HKU5 is in the region between S and E, where HCoV-EMC possesses five ORFs (NS3a-NS3e) instead of four, with low (31%–62%) amino acid identities to Ty-BatCoV HKU4/Pi-BatCoV HKU5. Comparison of the seven conserved replicase domains for species demarcation shows that HCoV-EMC is a novel CoV species. More intensive surveillance studies in bats and other animals may reveal the natural host of HCoV-EMC.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Zaki, Am" uniqKey="Zaki A">AM Zaki</name></author><author><name sortKey="Van Boheemen, S" uniqKey="Van Boheemen S">S van Boheemen</name></author><author><name sortKey="Bestebroer, Tm" uniqKey="Bestebroer T">TM Bestebroer</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Van Der Hoek, L" uniqKey="Van Der Hoek L">L van der Hoek</name></author><author><name sortKey="Pyrc, K" uniqKey="Pyrc K">K Pyrc</name></author><author><name sortKey="Jebbink, Mf" uniqKey="Jebbink M">MF Jebbink</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Woo, Pc" uniqKey="Woo P">PC Woo</name></author><author><name sortKey="Lau, Sk" uniqKey="Lau S">SK Lau</name></author><author><name sortKey="Chu, Cm" uniqKey="Chu C">CM Chu</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Woo, Pc" uniqKey="Woo P">PC Woo</name></author><author><name sortKey="Lau, Sk" uniqKey="Lau S">SK Lau</name></author><author><name sortKey="Lam, Cs" uniqKey="Lam C">CS Lam</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Woo, Pc" uniqKey="Woo P">PC Woo</name></author><author><name sortKey="Lau, Sk" uniqKey="Lau S">SK Lau</name></author><author><name sortKey="Lam, Cs" uniqKey="Lam C">CS Lam</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Lau, Sk" uniqKey="Lau S">SK Lau</name></author><author><name sortKey="Woo, Pc" uniqKey="Woo P">PC Woo</name></author><author><name sortKey="Yip, Cc" uniqKey="Yip C">CC Yip</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Lau, Sk" uniqKey="Lau S">SK Lau</name></author><author><name sortKey="Woo, Pc" uniqKey="Woo P">PC Woo</name></author><author><name sortKey="Li, 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Yip</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Lau, Sk" uniqKey="Lau S">SK Lau</name></author><author><name sortKey="Li, Ks" uniqKey="Li K">KS Li</name></author><author><name sortKey="Tsang, Ak" uniqKey="Tsang A">AK Tsang</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>République populaire de Chine</li></country></list><tree><country name="République populaire de Chine"><noRegion><name sortKey="Woo, Patrick Cy" sort="Woo, Patrick Cy" uniqKey="Woo P" first="Patrick Cy" last="Woo">Patrick Cy Woo</name></noRegion><name sortKey="Lau, Susanna Kp" sort="Lau, Susanna Kp" uniqKey="Lau S" first="Susanna Kp" last="Lau">Susanna Kp Lau</name><name sortKey="Lau, Susanna Kp" sort="Lau, Susanna Kp" uniqKey="Lau S" first="Susanna Kp" last="Lau">Susanna Kp Lau</name><name sortKey="Lau, Susanna Kp" sort="Lau, Susanna Kp" uniqKey="Lau S" first="Susanna Kp" last="Lau">Susanna Kp Lau</name><name sortKey="Lau, Susanna Kp" sort="Lau, Susanna Kp" uniqKey="Lau S" first="Susanna Kp" last="Lau">Susanna Kp Lau</name><name sortKey="Li, Kenneth Sm" sort="Li, Kenneth Sm" uniqKey="Li K" first="Kenneth Sm" last="Li">Kenneth Sm Li</name><name sortKey="Tsang, Alan Kl" sort="Tsang, Alan Kl" uniqKey="Tsang A" first="Alan Kl" last="Tsang">Alan Kl Tsang</name><name sortKey="Woo, Patrick Cy" sort="Woo, Patrick Cy" uniqKey="Woo P" first="Patrick Cy" last="Woo">Patrick Cy Woo</name><name sortKey="Woo, Patrick Cy" sort="Woo, Patrick Cy" uniqKey="Woo P" first="Patrick Cy" last="Woo">Patrick Cy Woo</name><name sortKey="Woo, Patrick Cy" sort="Woo, Patrick Cy" uniqKey="Woo P" first="Patrick Cy" last="Woo">Patrick Cy Woo</name><name sortKey="Yuen, Kwok Yung" sort="Yuen, Kwok Yung" uniqKey="Yuen K" first="Kwok-Yung" last="Yuen">Kwok-Yung Yuen</name><name sortKey="Yuen, Kwok Yung" sort="Yuen, Kwok Yung" uniqKey="Yuen K" first="Kwok-Yung" last="Yuen">Kwok-Yung Yuen</name><name sortKey="Yuen, Kwok Yung" sort="Yuen, Kwok Yung" uniqKey="Yuen K" first="Kwok-Yung" last="Yuen">Kwok-Yung Yuen</name><name sortKey="Yuen, Kwok Yung" sort="Yuen, Kwok Yung" uniqKey="Yuen K" first="Kwok-Yung" last="Yuen">Kwok-Yung Yuen</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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