The E Protein Is a Multifunctional Membrane Protein of SARS-CoV
Identifieur interne : 005D59 ( Main/Curation ); précédent : 005D58; suivant : 005D60The E Protein Is a Multifunctional Membrane Protein of SARS-CoV
Auteurs : Qingfa Wu [République populaire de Chine] ; Yilin Zhang [République populaire de Chine] ; Hong Lü [République populaire de Chine] ; Jing Wang [République populaire de Chine] ; Ximiao He [République populaire de Chine] ; Yong Liu [République populaire de Chine] ; Chen Ye [République populaire de Chine] ; Wei Lin [République populaire de Chine] ; Jianfei Hu [République populaire de Chine] ; Jia Ji [République populaire de Chine] ; Jing Xu [République populaire de Chine] ; Jia Ye [République populaire de Chine] ; Yongwu Hu [République populaire de Chine] ; Wenjun Chen [République populaire de Chine] ; Songgang Li [République populaire de Chine] ; Jun Wang [République populaire de Chine] ; Jian Wang [République populaire de Chine] ; Shengli Bi [République populaire de Chine] ; Huanming Yang [République populaire de Chine]Source :
- Genomics, Proteomics & Bioinformatics [ 1672-0229 ] ; 2003.
Descripteurs français
- KwdFr :
- Alignement de séquences, Analyse de regroupements, Analyse de séquence d'ADN, Codon (génétique), Composants de gène, Conformation des protéines, Données de séquences moléculaires, Glycoprotéine de spicule des coronavirus, Glycoprotéines membranaires (métabolisme), Génome viral, Phylogénie, Protéines de l'enveloppe virale (génétique), Protéines de l'enveloppe virale (métabolisme), Protéines membranaires (génétique), Protéines membranaires (métabolisme), Similitude de séquences, Séquence d'acides aminés, Séquence nucléotidique, Virus du SRAS (génétique).
- MESH :
- génétique : Codon, Protéines de l'enveloppe virale, Protéines membranaires, Virus du SRAS.
- métabolisme : Glycoprotéines membranaires, Protéines de l'enveloppe virale, Protéines membranaires.
- Alignement de séquences, Analyse de regroupements, Analyse de séquence d'ADN, Composants de gène, Conformation des protéines, Données de séquences moléculaires, Glycoprotéine de spicule des coronavirus, Génome viral, Phylogénie, Similitude de séquences, Séquence d'acides aminés, Séquence nucléotidique.
English descriptors
- KwdEn :
- Amino Acid Sequence, Base Sequence, Cluster Analysis, Codon (genetics), Gene Components, Genome, Viral, Membrane Glycoproteins (metabolism), Membrane Proteins (genetics), Membrane Proteins (metabolism), Molecular Sequence Data, Phylogeny, Protein Conformation, SARS Virus (genetics), Sequence Alignment, Sequence Analysis, DNA, Sequence Homology, Spike Glycoprotein, Coronavirus, Viral Envelope Proteins (genetics), Viral Envelope Proteins (metabolism).
- MESH :
- chemical , genetics : Codon, Membrane Proteins, Viral Envelope Proteins.
- chemical , metabolism : Membrane Glycoproteins, Membrane Proteins, Viral Envelope Proteins.
- genetics : SARS Virus.
- Amino Acid Sequence, Base Sequence, Cluster Analysis, Gene Components, Genome, Viral, Molecular Sequence Data, Phylogeny, Protein Conformation, Sequence Alignment, Sequence Analysis, DNA, Sequence Homology, Spike Glycoprotein, Coronavirus.
Abstract
The E (envelope) protein is the smallest structural protein in all coronaviruses and is the only viral structural protein in which no variation has been detected. We conducted genome sequencing and phylogenetic analyses of SARS-CoV. Based on genome sequencing, we predicted the E protein is a transmembrane (TM) protein characterized by a TM region with strong hydrophobicity and
Url:
DOI: 10.1016/S1672-0229(03)01017-9
PubMed: 15626343
PubMed Central: 5172412
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PMC:5172412Le document en format XML
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<author><name sortKey="He, Ximiao" sort="He, Ximiao" uniqKey="He X" first="Ximiao" last="He">Ximiao He</name>
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<wicri:regionArea>Beijing Genomics Institute, Chinese Academy of Sciences, Beijing 101300</wicri:regionArea>
<placeName><settlement type="city">Pékin</settlement>
</placeName>
</affiliation>
<affiliation wicri:level="4"><nlm:aff id="aff0015">College of Life Sciences, Peking University, Beijing 100871, China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>College of Life Sciences, Peking University, Beijing 100871</wicri:regionArea>
<placeName><settlement type="city">Pékin</settlement>
</placeName>
<orgName type="university">Université de Pékin</orgName>
<placeName><settlement type="city">Pékin</settlement>
<region type="capitale">Pékin</region>
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</affiliation>
</author>
<author><name sortKey="Ji, Jia" sort="Ji, Jia" uniqKey="Ji J" first="Jia" last="Ji">Jia Ji</name>
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<wicri:regionArea>Beijing Genomics Institute, Chinese Academy of Sciences, Beijing 101300</wicri:regionArea>
<placeName><settlement type="city">Pékin</settlement>
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</author>
<author><name sortKey="Xu, Jing" sort="Xu, Jing" uniqKey="Xu J" first="Jing" last="Xu">Jing Xu</name>
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<wicri:regionArea>Beijing Genomics Institute, Chinese Academy of Sciences, Beijing 101300</wicri:regionArea>
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<author><name sortKey="Ye, Jia" sort="Ye, Jia" uniqKey="Ye J" first="Jia" last="Ye">Jia Ye</name>
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<wicri:regionArea>Beijing Genomics Institute, Chinese Academy of Sciences, Beijing 101300</wicri:regionArea>
<placeName><settlement type="city">Pékin</settlement>
</placeName>
</affiliation>
<affiliation wicri:level="4"><nlm:aff id="aff0010">James D. Watson Institute of Genome Sciences, Zhijiang Campus, Zhejiang University, Hangzhou 310008, China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>James D. Watson Institute of Genome Sciences, Zhijiang Campus, Zhejiang University, Hangzhou 310008</wicri:regionArea>
<placeName><settlement type="city">Hangzhou</settlement>
<region type="province">Zhejiang</region>
</placeName>
<orgName type="university">Université de Zhejiang</orgName>
<placeName><settlement type="city">Hangzhou</settlement>
<region type="province">Zhejiang</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Hu, Yongwu" sort="Hu, Yongwu" uniqKey="Hu Y" first="Yongwu" last="Hu">Yongwu Hu</name>
<affiliation wicri:level="1"><nlm:aff id="aff0005">Beijing Genomics Institute, Chinese Academy of Sciences, Beijing 101300, China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Beijing Genomics Institute, Chinese Academy of Sciences, Beijing 101300</wicri:regionArea>
<placeName><settlement type="city">Pékin</settlement>
</placeName>
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</author>
<author><name sortKey="Chen, Wenjun" sort="Chen, Wenjun" uniqKey="Chen W" first="Wenjun" last="Chen">Wenjun Chen</name>
<affiliation wicri:level="1"><nlm:aff id="aff0005">Beijing Genomics Institute, Chinese Academy of Sciences, Beijing 101300, China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Beijing Genomics Institute, Chinese Academy of Sciences, Beijing 101300</wicri:regionArea>
<placeName><settlement type="city">Pékin</settlement>
</placeName>
</affiliation>
</author>
<author><name sortKey="Li, Songgang" sort="Li, Songgang" uniqKey="Li S" first="Songgang" last="Li">Songgang Li</name>
<affiliation wicri:level="1"><nlm:aff id="aff0005">Beijing Genomics Institute, Chinese Academy of Sciences, Beijing 101300, China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Beijing Genomics Institute, Chinese Academy of Sciences, Beijing 101300</wicri:regionArea>
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<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>College of Life Sciences, Peking University, Beijing 100871</wicri:regionArea>
<placeName><settlement type="city">Pékin</settlement>
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<placeName><settlement type="city">Pékin</settlement>
<region type="capitale">Pékin</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Wang, Jun" sort="Wang, Jun" uniqKey="Wang J" first="Jun" last="Wang">Jun Wang</name>
<affiliation wicri:level="1"><nlm:aff id="aff0005">Beijing Genomics Institute, Chinese Academy of Sciences, Beijing 101300, China</nlm:aff>
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<wicri:regionArea>Beijing Genomics Institute, Chinese Academy of Sciences, Beijing 101300</wicri:regionArea>
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</placeName>
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</author>
<author><name sortKey="Wang, Jian" sort="Wang, Jian" uniqKey="Wang J" first="Jian" last="Wang">Jian Wang</name>
<affiliation wicri:level="1"><nlm:aff id="aff0005">Beijing Genomics Institute, Chinese Academy of Sciences, Beijing 101300, China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Beijing Genomics Institute, Chinese Academy of Sciences, Beijing 101300</wicri:regionArea>
<placeName><settlement type="city">Pékin</settlement>
</placeName>
</affiliation>
<affiliation wicri:level="4"><nlm:aff id="aff0010">James D. Watson Institute of Genome Sciences, Zhijiang Campus, Zhejiang University, Hangzhou 310008, China</nlm:aff>
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<wicri:regionArea>James D. Watson Institute of Genome Sciences, Zhijiang Campus, Zhejiang University, Hangzhou 310008</wicri:regionArea>
<placeName><settlement type="city">Hangzhou</settlement>
<region type="province">Zhejiang</region>
</placeName>
<orgName type="university">Université de Zhejiang</orgName>
<placeName><settlement type="city">Hangzhou</settlement>
<region type="province">Zhejiang</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Bi, Shengli" sort="Bi, Shengli" uniqKey="Bi S" first="Shengli" last="Bi">Shengli Bi</name>
<affiliation wicri:level="1"><nlm:aff id="aff0025">Center of Disease Control and Prevention, Beijing 100050, China</nlm:aff>
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<wicri:regionArea>Center of Disease Control and Prevention, Beijing 100050</wicri:regionArea>
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</placeName>
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</author>
<author><name sortKey="Yang, Huanming" sort="Yang, Huanming" uniqKey="Yang H" first="Huanming" last="Yang">Huanming Yang</name>
<affiliation wicri:level="1"><nlm:aff id="aff0005">Beijing Genomics Institute, Chinese Academy of Sciences, Beijing 101300, China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Beijing Genomics Institute, Chinese Academy of Sciences, Beijing 101300</wicri:regionArea>
<placeName><settlement type="city">Pékin</settlement>
</placeName>
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<affiliation wicri:level="4"><nlm:aff id="aff0010">James D. Watson Institute of Genome Sciences, Zhijiang Campus, Zhejiang University, Hangzhou 310008, China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>James D. Watson Institute of Genome Sciences, Zhijiang Campus, Zhejiang University, Hangzhou 310008</wicri:regionArea>
<placeName><settlement type="city">Hangzhou</settlement>
<region type="province">Zhejiang</region>
</placeName>
<orgName type="university">Université de Zhejiang</orgName>
<placeName><settlement type="city">Hangzhou</settlement>
<region type="province">Zhejiang</region>
</placeName>
</affiliation>
</author>
</analytic>
<series><title level="j">Genomics, Proteomics & Bioinformatics</title>
<idno type="ISSN">1672-0229</idno>
<idno type="eISSN">2210-3244</idno>
<imprint><date when="2003">2003</date>
</imprint>
</series>
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<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Amino Acid Sequence</term>
<term>Base Sequence</term>
<term>Cluster Analysis</term>
<term>Codon (genetics)</term>
<term>Gene Components</term>
<term>Genome, Viral</term>
<term>Membrane Glycoproteins (metabolism)</term>
<term>Membrane Proteins (genetics)</term>
<term>Membrane Proteins (metabolism)</term>
<term>Molecular Sequence Data</term>
<term>Phylogeny</term>
<term>Protein Conformation</term>
<term>SARS Virus (genetics)</term>
<term>Sequence Alignment</term>
<term>Sequence Analysis, DNA</term>
<term>Sequence Homology</term>
<term>Spike Glycoprotein, Coronavirus</term>
<term>Viral Envelope Proteins (genetics)</term>
<term>Viral Envelope Proteins (metabolism)</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr"><term>Alignement de séquences</term>
<term>Analyse de regroupements</term>
<term>Analyse de séquence d'ADN</term>
<term>Codon (génétique)</term>
<term>Composants de gène</term>
<term>Conformation des protéines</term>
<term>Données de séquences moléculaires</term>
<term>Glycoprotéine de spicule des coronavirus</term>
<term>Glycoprotéines membranaires (métabolisme)</term>
<term>Génome viral</term>
<term>Phylogénie</term>
<term>Protéines de l'enveloppe virale (génétique)</term>
<term>Protéines de l'enveloppe virale (métabolisme)</term>
<term>Protéines membranaires (génétique)</term>
<term>Protéines membranaires (métabolisme)</term>
<term>Similitude de séquences</term>
<term>Séquence d'acides aminés</term>
<term>Séquence nucléotidique</term>
<term>Virus du SRAS (génétique)</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Codon</term>
<term>Membrane Proteins</term>
<term>Viral Envelope Proteins</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>Membrane Glycoproteins</term>
<term>Membrane Proteins</term>
<term>Viral Envelope Proteins</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>SARS Virus</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Codon</term>
<term>Protéines de l'enveloppe virale</term>
<term>Protéines membranaires</term>
<term>Virus du SRAS</term>
</keywords>
<keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>Glycoprotéines membranaires</term>
<term>Protéines de l'enveloppe virale</term>
<term>Protéines membranaires</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Amino Acid Sequence</term>
<term>Base Sequence</term>
<term>Cluster Analysis</term>
<term>Gene Components</term>
<term>Genome, Viral</term>
<term>Molecular Sequence Data</term>
<term>Phylogeny</term>
<term>Protein Conformation</term>
<term>Sequence Alignment</term>
<term>Sequence Analysis, DNA</term>
<term>Sequence Homology</term>
<term>Spike Glycoprotein, Coronavirus</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr"><term>Alignement de séquences</term>
<term>Analyse de regroupements</term>
<term>Analyse de séquence d'ADN</term>
<term>Composants de gène</term>
<term>Conformation des protéines</term>
<term>Données de séquences moléculaires</term>
<term>Glycoprotéine de spicule des coronavirus</term>
<term>Génome viral</term>
<term>Phylogénie</term>
<term>Similitude de séquences</term>
<term>Séquence d'acides aminés</term>
<term>Séquence nucléotidique</term>
</keywords>
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<front><div type="abstract" xml:lang="en"><p>The E (envelope) protein is the smallest structural protein in all coronaviruses and is the only viral structural protein in which no variation has been detected. We conducted genome sequencing and phylogenetic analyses of SARS-CoV. Based on genome sequencing, we predicted the E protein is a transmembrane (TM) protein characterized by a TM region with strong hydrophobicity and <italic>α</italic>
-helix conformation. We identified a segment (NH<sub>2</sub>
-_L-Cys-A-Y-Cys-Cys-N_-COOH) in the carboxyl-terminal region of the E protein that appears to form three disulfide bonds with another segment of corresponding cysteines in the carboxyl-terminus of the S (spike) protein. These bonds point to a possible structural association between the E and S proteins. Our phylogenetic analyses of the E protein sequences in all published coronaviruses place SARS-CoV in an independent group in <italic>Coronaviridae</italic>
and suggest a non-human animal origin.</p>
</div>
</front>
<back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Cavanagh, D" uniqKey="Cavanagh D">D. Cavanagh</name>
</author>
<author><name sortKey="Brown, T D K" uniqKey="Brown T">T.D.K. Brown</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Corse, E" uniqKey="Corse E">E. Corse</name>
</author>
<author><name sortKey="Machamer, C E" uniqKey="Machamer C">C.E. Machamer</name>
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</analytic>
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<biblStruct><analytic><author><name sortKey="An, S" uniqKey="An S">S. An</name>
</author>
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<biblStruct><analytic><author><name sortKey="Maeda, J" uniqKey="Maeda J">J. Maeda</name>
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</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Baudoux, P" uniqKey="Baudoux P">P. Baudoux</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Ortego, J" uniqKey="Ortego J">J. Ortego</name>
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</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Kuo, L" uniqKey="Kuo L">L. Kuo</name>
</author>
<author><name sortKey="Masters, P S" uniqKey="Masters P">P.S. Masters</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Fischer, F" uniqKey="Fischer F">F. Fischer</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Qin, E D" uniqKey="Qin E">E.D. Qin</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Rota, P A" uniqKey="Rota P">P.A. Rota</name>
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</biblStruct>
<biblStruct><analytic><author><name sortKey="Marra, M A" uniqKey="Marra M">M.A. Marra</name>
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</biblStruct>
<biblStruct><analytic><author><name sortKey="Ruan, Y" uniqKey="Ruan Y">Y. Ruan</name>
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</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Holmes, K V" uniqKey="Holmes K">K.V. Holmes</name>
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<biblStruct><analytic><author><name sortKey="Hasler, U" uniqKey="Hasler U">U. Hasler</name>
</author>
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<biblStruct><analytic><author><name sortKey="Godet, M L" uniqKey="Godet M">M.L. Godet</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Ballesteros, M L" uniqKey="Ballesteros M">M.L. Ballesteros</name>
</author>
</analytic>
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<biblStruct><analytic><author><name sortKey="Sanchez, C M" uniqKey="Sanchez C">C.M. Sanchez</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Leparc Goffart, I" uniqKey="Leparc Goffart I">I. Leparc-Goffart</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Gallagher, T M" uniqKey="Gallagher T">T.M. Gallagher</name>
</author>
<author><name sortKey="Buchmeier, M J" uniqKey="Buchmeier M">M.J. Buchmeier</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Garoff, H" uniqKey="Garoff H">H. Garoff</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Locker, J K" uniqKey="Locker J">J.K. Locker</name>
</author>
</analytic>
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<biblStruct><analytic><author><name sortKey="De Haan, C A M" uniqKey="De Haan C">C.A.M. de Haan</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Raamsman, M J B" uniqKey="Raamsman M">M.J.B. Raamsman</name>
</author>
</analytic>
</biblStruct>
</listBibl>
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