Preclinical evaluation of two real-time, reverse transcription-PCR assays for detection of the severe acute respiratory syndrome coronavirus
Identifieur interne : 005A91 ( Main/Curation ); précédent : 005A90; suivant : 005A92Preclinical evaluation of two real-time, reverse transcription-PCR assays for detection of the severe acute respiratory syndrome coronavirus
Auteurs : Adam M. Bressler [États-Unis] ; Frederick S. NolteSource :
- Journal of clinical microbiology : (Print) [ 0095-1137 ] ; 2004.
Descripteurs français
- KwdFr :
- ARN viral (génétique), ARN viral (isolement et purification), Analyse de régression, Cadres ouverts de lecture (génétique), Fèces (virologie), Humains, Liquide de lavage bronchoalvéolaire (virologie), Microbiologie de l'eau, RT-PCR (), Reproductibilité des résultats, Syndrome respiratoire aigu sévère (diagnostic), Virus du SRAS (génétique), Virus du SRAS (isolement et purification).
- MESH :
- diagnostic : Syndrome respiratoire aigu sévère.
- génétique : ARN viral, Cadres ouverts de lecture, Virus du SRAS.
- isolement et purification : ARN viral, Virus du SRAS.
- virologie : Fèces, Liquide de lavage bronchoalvéolaire.
- Pascal (Inist)
English descriptors
- KwdEn :
- Bronchoalveolar Lavage Fluid (virology), Coronavirus, Detection, Feces (virology), Humans, Microbiology, Open Reading Frames (genetics), RNA, Viral (genetics), RNA, Viral (isolation & purification), Real time, Regression Analysis, Reproducibility of Results, Reverse Transcriptase Polymerase Chain Reaction (methods), Reverse transcription polymerase chain reaction, SARS Virus (genetics), SARS Virus (isolation & purification), Severe Acute Respiratory Syndrome (diagnosis), Severe acute respiratory syndrome, Water Microbiology.
- MESH :
- chemical , genetics : RNA, Viral.
- diagnosis : Severe Acute Respiratory Syndrome.
- genetics : Open Reading Frames, SARS Virus.
- chemical , isolation & purification : RNA, Viral, SARS Virus.
- methods : Reverse Transcriptase Polymerase Chain Reaction.
- virology : Bronchoalveolar Lavage Fluid, Feces.
- Humans, Regression Analysis, Reproducibility of Results, Water Microbiology.
Abstract
We verified the analytical performance characteristics of a previously described real-time reverse transcription-PCR (RT-PCR) assay targeting the open reading frame (ORF) 1b region of the severe acute respiratory syndrome coronavirus (SARS-CoV) with RNA transcripts. We then compared it to a novel nucleocapsid gene real-time RT-PCR assay with genomic RNA. The assays differed only in the primer and probe sequences and final concentrations. A commercially available armored RNA (Ambion, Austin, Tex.) was evaluated as positive control for the ORF 1b assay. The analytical sensitivity, reproducibility, amplification efficiency, and dynamic range of the assays were similar. Both were specific for SARS-CoV as determined by testing against human CoV 229E and OC43, specimens from patients without SARS, and by BLAST searches of GenBank for primer and probe sequence homology. The armored RNA was found to be a suitable positive control for the ORF 1b assay that could be reliably recovered and amplified from a variety of clinical specimens.
Url:
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Pascal:04-0195367Le document en format XML
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<front><div type="abstract" xml:lang="en">We verified the analytical performance characteristics of a previously described real-time reverse transcription-PCR (RT-PCR) assay targeting the open reading frame (ORF) 1b region of the severe acute respiratory syndrome coronavirus (SARS-CoV) with RNA transcripts. We then compared it to a novel nucleocapsid gene real-time RT-PCR assay with genomic RNA. The assays differed only in the primer and probe sequences and final concentrations. A commercially available armored RNA (Ambion, Austin, Tex.) was evaluated as positive control for the ORF 1b assay. The analytical sensitivity, reproducibility, amplification efficiency, and dynamic range of the assays were similar. Both were specific for SARS-CoV as determined by testing against human CoV 229E and OC43, specimens from patients without SARS, and by BLAST searches of GenBank for primer and probe sequence homology. The armored RNA was found to be a suitable positive control for the ORF 1b assay that could be reliably recovered and amplified from a variety of clinical specimens.</div>
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<term>ARN viral (isolement et purification)</term>
<term>Analyse de régression</term>
<term>Cadres ouverts de lecture (génétique)</term>
<term>Fèces (virologie)</term>
<term>Humains</term>
<term>Liquide de lavage bronchoalvéolaire (virologie)</term>
<term>Microbiologie de l'eau</term>
<term>RT-PCR ()</term>
<term>Reproductibilité des résultats</term>
<term>Syndrome respiratoire aigu sévère (diagnostic)</term>
<term>Virus du SRAS (génétique)</term>
<term>Virus du SRAS (isolement et purification)</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>RNA, Viral</term>
</keywords>
<keywords scheme="MESH" qualifier="diagnosis" xml:lang="en"><term>Severe Acute Respiratory Syndrome</term>
</keywords>
<keywords scheme="MESH" qualifier="diagnostic" xml:lang="fr"><term>Syndrome respiratoire aigu sévère</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Open Reading Frames</term>
<term>SARS Virus</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>ARN viral</term>
<term>Cadres ouverts de lecture</term>
<term>Virus du SRAS</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="isolation & purification" xml:lang="en"><term>RNA, Viral</term>
<term>SARS Virus</term>
</keywords>
<keywords scheme="MESH" qualifier="isolement et purification" xml:lang="fr"><term>ARN viral</term>
<term>Virus du SRAS</term>
</keywords>
<keywords scheme="MESH" qualifier="methods" xml:lang="en"><term>Reverse Transcriptase Polymerase Chain Reaction</term>
</keywords>
<keywords scheme="MESH" qualifier="virologie" xml:lang="fr"><term>Fèces</term>
<term>Liquide de lavage bronchoalvéolaire</term>
</keywords>
<keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Bronchoalveolar Lavage Fluid</term>
<term>Feces</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Humans</term>
<term>Regression Analysis</term>
<term>Reproducibility of Results</term>
<term>Water Microbiology</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr"><term>Analyse de régression</term>
<term>Humains</term>
<term>Microbiologie de l'eau</term>
<term>RT-PCR</term>
<term>Reproductibilité des résultats</term>
</keywords>
</textClass>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en"><p>We verified the analytical performance characteristics of a previously described real-time reverse transcription-PCR (RT-PCR) assay targeting the open reading frame (ORF) 1b region of the severe acute respiratory syndrome coronavirus (SARS-CoV) with RNA transcripts. We then compared it to a novel nucleocapsid gene real-time RT-PCR assay with genomic RNA. The assays differed only in the primer and probe sequences and final concentrations. A commercially available armored RNA (Ambion, Austin, Tex.) was evaluated as positive control for the ORF 1b assay. The analytical sensitivity, reproducibility, amplification efficiency, and dynamic range of the assays were similar. Both were specific for SARS-CoV as determined by testing against human CoV 229E and OC43, specimens from patients without SARS, and by BLAST searches of GenBank for primer and probe sequence homology. The armored RNA was found to be a suitable positive control for the ORF 1b assay that could be reliably recovered and amplified from a variety of clinical specimens.</p>
</div>
</front>
</TEI>
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