SidaGhanaV1, PubMed, Curation, bibRecord, 000535

Genomic divergence of an HIV-2 from a German AIDS patient probably infected in Mali.

Identifieur interne : 000535 ( PubMed/Curation ); précédent : 000534; suivant : 000536

Genomic divergence of an HIV-2 from a German AIDS patient probably infected in Mali.

Auteurs : F. Kirchhoff ; K D Jentsch ; A. Stuke ; J. Mous ; G. Hunsmann

Source :

AIDS (London, England) [ 0269-9370 ] ; 1990.

RBID : pubmed:2252559

Descripteurs français

KwdFr :
- Alignement de séquences, Données de séquences moléculaires, Humains, Mali, Phylogénie, Produits du gène env (), Produits du gène env (génétique), Produits du gène gag (), Produits du gène gag (génétique), Produits du gène nef (), Produits du gène nef (génétique), Produits du gène nef du virus de l'immunodéficience humaine, Produits du gène pol (), Produits du gène pol (génétique), Protéines virales régulatrices ou accessoires (), Protéines virales régulatrices ou accessoires (génétique), Similitude de séquences d'acides nucléiques, Syndrome d'immunodéficience acquise (microbiologie), Séquence d'acides aminés, Séquence nucléotidique, Séquences répétées d'acides nucléiques, VIH-2 (Virus de l'Immunodéficience Humaine de type 2) (), VIH-2 (Virus de l'Immunodéficience Humaine de type 2) (génétique), Variation génétique, Virus de l'immunodéficience simienne (génétique).
MESH :
Wicri :
- geographic : Mali.

English descriptors

KwdEn :
- Acquired Immunodeficiency Syndrome (microbiology), Amino Acid Sequence, Base Sequence, Gene Products, env (chemistry), Gene Products, env (genetics), Gene Products, gag (chemistry), Gene Products, gag (genetics), Gene Products, nef (chemistry), Gene Products, nef (genetics), Gene Products, pol (chemistry), Gene Products, pol (genetics), Genetic Variation, HIV-2 (classification), HIV-2 (genetics), Humans, Mali, Molecular Sequence Data, Phylogeny, Repetitive Sequences, Nucleic Acid, Sequence Alignment, Sequence Homology, Nucleic Acid, Simian Immunodeficiency Virus (genetics), Viral Regulatory and Accessory Proteins (chemistry), Viral Regulatory and Accessory Proteins (genetics), nef Gene Products, Human Immunodeficiency Virus.
MESH :
- chemical , chemistry : Gene Products, env, Gene Products, gag, Gene Products, nef, Gene Products, pol, Viral Regulatory and Accessory Proteins.
- chemical , genetics : Gene Products, env, Gene Products, gag, Gene Products, nef, Gene Products, pol, Viral Regulatory and Accessory Proteins.
- geographic : Mali, nef Gene Products, Human Immunodeficiency Virus.
- classification : HIV-2.
- genetics : HIV-2, Simian Immunodeficiency Virus.
- microbiology : Acquired Immunodeficiency Syndrome.
- Amino Acid Sequence, Base Sequence, Genetic Variation, Humans, Molecular Sequence Data, Phylogeny, Repetitive Sequences, Nucleic Acid, Sequence Alignment, Sequence Homology, Nucleic Acid.

Abstract

The complete nucleotide sequence of an HIV-2 isolate derived from a German AIDS patient with predominantly neurological symptoms is reported. The HIV-2BEN sequence is highly divergent from those of previously described HIV-2 and SIV strains. Evolutionary tree analysis of eight HIV-2 sequences reveals the existence of three HIV-2 groups. HIV-2BEN belongs to a group with two isolates from Ghana and The Gambia. Based on a comparison of HIV-2BEN with six HIV-2 isolates, SIVsmm and SIVmac, the variability of the structural env and gag proteins is similar within the HIV-2/SIVsmm/mac and HIV-1 groups. In contrast, the regulatory HIV-1 proteins are more highly conserved than those from HIV-2 strains. Multiple sequence alignments reveal that some domains of the envelope and regulatory proteins are well conserved among HIV-1, HIV-2/SIVsmm/mac, SIVagm and SIVmnd. The identification of conserved domains within the external glycoprotein could help to develop broadly active vaccines.

PubMed: 2252559

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F. Kirchhoff

<affiliation><nlm:affiliation>German Primate Center, Department of Virology and Immunology, Göttingen.</nlm:affiliation>
<wicri:noCountry code="subField">Göttingen</wicri:noCountry>
</affiliation>

Le document en format XML

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<term>Amino Acid Sequence</term>
<term>Base Sequence</term>
<term>Gene Products, env (chemistry)</term>
<term>Gene Products, env (genetics)</term>
<term>Gene Products, gag (chemistry)</term>
<term>Gene Products, gag (genetics)</term>
<term>Gene Products, nef (chemistry)</term>
<term>Gene Products, nef (genetics)</term>
<term>Gene Products, pol (chemistry)</term>
<term>Gene Products, pol (genetics)</term>
<term>Genetic Variation</term>
<term>HIV-2 (classification)</term>
<term>HIV-2 (genetics)</term>
<term>Humans</term>
<term>Mali</term>
<term>Molecular Sequence Data</term>
<term>Phylogeny</term>
<term>Repetitive Sequences, Nucleic Acid</term>
<term>Sequence Alignment</term>
<term>Sequence Homology, Nucleic Acid</term>
<term>Simian Immunodeficiency Virus (genetics)</term>
<term>Viral Regulatory and Accessory Proteins (chemistry)</term>
<term>Viral Regulatory and Accessory Proteins (genetics)</term>
<term>nef Gene Products, Human Immunodeficiency Virus</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr"><term>Alignement de séquences</term>
<term>Données de séquences moléculaires</term>
<term>Humains</term>
<term>Mali</term>
<term>Phylogénie</term>
<term>Produits du gène env ()</term>
<term>Produits du gène env (génétique)</term>
<term>Produits du gène gag ()</term>
<term>Produits du gène gag (génétique)</term>
<term>Produits du gène nef ()</term>
<term>Produits du gène nef (génétique)</term>
<term>Produits du gène nef du virus de l'immunodéficience humaine</term>
<term>Produits du gène pol ()</term>
<term>Produits du gène pol (génétique)</term>
<term>Protéines virales régulatrices ou accessoires ()</term>
<term>Protéines virales régulatrices ou accessoires (génétique)</term>
<term>Similitude de séquences d'acides nucléiques</term>
<term>Syndrome d'immunodéficience acquise (microbiologie)</term>
<term>Séquence d'acides aminés</term>
<term>Séquence nucléotidique</term>
<term>Séquences répétées d'acides nucléiques</term>
<term>VIH-2 (Virus de l'Immunodéficience Humaine de type 2) ()</term>
<term>VIH-2 (Virus de l'Immunodéficience Humaine de type 2) (génétique)</term>
<term>Variation génétique</term>
<term>Virus de l'immunodéficience simienne (génétique)</term>
</keywords>
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<term>Gene Products, gag</term>
<term>Gene Products, nef</term>
<term>Gene Products, pol</term>
<term>Viral Regulatory and Accessory Proteins</term>
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<term>Gene Products, gag</term>
<term>Gene Products, nef</term>
<term>Gene Products, pol</term>
<term>Viral Regulatory and Accessory Proteins</term>
</keywords>
<keywords scheme="MESH" type="geographic" xml:lang="en"><term>Mali</term>
<term>nef Gene Products, Human Immunodeficiency Virus</term>
</keywords>
<keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>HIV-2</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>HIV-2</term>
<term>Simian Immunodeficiency Virus</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Produits du gène env</term>
<term>Produits du gène gag</term>
<term>Produits du gène nef</term>
<term>Produits du gène pol</term>
<term>Protéines virales régulatrices ou accessoires</term>
<term>VIH-2 (Virus de l'Immunodéficience Humaine de type 2)</term>
<term>Virus de l'immunodéficience simienne</term>
</keywords>
<keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Syndrome d'immunodéficience acquise</term>
</keywords>
<keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Acquired Immunodeficiency Syndrome</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Amino Acid Sequence</term>
<term>Base Sequence</term>
<term>Genetic Variation</term>
<term>Humans</term>
<term>Molecular Sequence Data</term>
<term>Phylogeny</term>
<term>Repetitive Sequences, Nucleic Acid</term>
<term>Sequence Alignment</term>
<term>Sequence Homology, Nucleic Acid</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr"><term>Alignement de séquences</term>
<term>Données de séquences moléculaires</term>
<term>Humains</term>
<term>Mali</term>
<term>Phylogénie</term>
<term>Produits du gène env</term>
<term>Produits du gène gag</term>
<term>Produits du gène nef</term>
<term>Produits du gène nef du virus de l'immunodéficience humaine</term>
<term>Produits du gène pol</term>
<term>Protéines virales régulatrices ou accessoires</term>
<term>Similitude de séquences d'acides nucléiques</term>
<term>Séquence d'acides aminés</term>
<term>Séquence nucléotidique</term>
<term>Séquences répétées d'acides nucléiques</term>
<term>VIH-2 (Virus de l'Immunodéficience Humaine de type 2)</term>
<term>Variation génétique</term>
</keywords>
<keywords scheme="Wicri" type="geographic" xml:lang="fr"><term>Mali</term>
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<front><div type="abstract" xml:lang="en">The complete nucleotide sequence of an HIV-2 isolate derived from a German AIDS patient with predominantly neurological symptoms is reported. The HIV-2BEN sequence is highly divergent from those of previously described HIV-2 and SIV strains. Evolutionary tree analysis of eight HIV-2 sequences reveals the existence of three HIV-2 groups. HIV-2BEN belongs to a group with two isolates from Ghana and The Gambia. Based on a comparison of HIV-2BEN with six HIV-2 isolates, SIVsmm and SIVmac, the variability of the structural env and gag proteins is similar within the HIV-2/SIVsmm/mac and HIV-1 groups. In contrast, the regulatory HIV-1 proteins are more highly conserved than those from HIV-2 strains. Multiple sequence alignments reveal that some domains of the envelope and regulatory proteins are well conserved among HIV-1, HIV-2/SIVsmm/mac, SIVagm and SIVmnd. The identification of conserved domains within the external glycoprotein could help to develop broadly active vaccines.</div>
</front>
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<Abstract><AbstractText>The complete nucleotide sequence of an HIV-2 isolate derived from a German AIDS patient with predominantly neurological symptoms is reported. The HIV-2BEN sequence is highly divergent from those of previously described HIV-2 and SIV strains. Evolutionary tree analysis of eight HIV-2 sequences reveals the existence of three HIV-2 groups. HIV-2BEN belongs to a group with two isolates from Ghana and The Gambia. Based on a comparison of HIV-2BEN with six HIV-2 isolates, SIVsmm and SIVmac, the variability of the structural env and gag proteins is similar within the HIV-2/SIVsmm/mac and HIV-1 groups. In contrast, the regulatory HIV-1 proteins are more highly conserved than those from HIV-2 strains. Multiple sequence alignments reveal that some domains of the envelope and regulatory proteins are well conserved among HIV-1, HIV-2/SIVsmm/mac, SIVagm and SIVmnd. The identification of conserved domains within the external glycoprotein could help to develop broadly active vaccines.</AbstractText>
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	Le SIDA au Ghana (serveur d'exploration)
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Genomic divergence of an HIV-2 from a German AIDS patient probably infected in Mali.

Genomic divergence of an HIV-2 from a German AIDS patient probably infected in Mali.

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Abstract

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