Genetic analysis of HIV type 2 from Ghana and Guinea-Bissau, West Africa.
Identifieur interne : 001144 ( Main/Merge ); précédent : 001143; suivant : 001145Genetic analysis of HIV type 2 from Ghana and Guinea-Bissau, West Africa.
Auteurs : K. Ishikawa [Japon] ; W. Janssens ; J S Banor ; T. Shinno ; J. Piedade ; T. Sata ; W K Ampofo ; J A Brandful ; Y. Koyanagi ; N. Yamamoto ; W F Canas-Ferreira ; Y. Adu-Sarkodie ; T. KurataSource :
- AIDS research and human retroviruses [ 0889-2229 ] ; 2001.
Descripteurs français
- KwdFr :
- ADN viral (analyse), Analyse de séquence d'ADN, Données de séquences moléculaires, Ghana (épidémiologie), Guinée-Bissau (épidémiologie), Humains, Infections à VIH (virologie), Infections à VIH (épidémiologie), Phylogénie, Répétition terminale longue du VIH (génétique), VIH-2 (Virus de l'Immunodéficience Humaine de type 2) (), VIH-2 (Virus de l'Immunodéficience Humaine de type 2) (génétique).
- MESH :
- analyse : ADN viral.
- génétique : Répétition terminale longue du VIH, VIH-2 (Virus de l'Immunodéficience Humaine de type 2).
- virologie : Infections à VIH.
- épidémiologie : Ghana, Guinée-Bissau, Infections à VIH.
- Analyse de séquence d'ADN, Données de séquences moléculaires, Humains, Phylogénie, VIH-2 (Virus de l'Immunodéficience Humaine de type 2).
- Wicri :
- geographic : Ghana, Guinée-Bissau.
English descriptors
- KwdEn :
- MESH :
- chemical , analysis : DNA, Viral.
- geographic , epidemiology : Ghana, Guinea-Bissau.
- classification : HIV-2.
- epidemiology : HIV Infections.
- genetics : HIV Long Terminal Repeat, HIV-2.
- virology : HIV Infections.
- Humans, Molecular Sequence Data, Phylogeny, Sequence Analysis, DNA.
Abstract
The phylogenetic variability of part of the long terminal repeat (LTR) region of HIV-2 strains isolated in 1995 from five individuals residing in Bissau, the capital city of Guinea-Bissau, and collected from seven persons from Kumasi, Ghana in 1996-1997, was analyzed. All Guinean samples and all but one Ghanaian sample clustered with HIV-2 subtype A. One Ghanaian sample (14%) was classified as HIV-2 subtype B. This study adds to previous reports on HIV-2 subtype distribution in West Africa indicating local prevalence of HIV-2 subtype B in Ivory Coast and neighboring Ghana.
DOI: 10.1089/088922201753342077
PubMed: 11779354
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pubmed:11779354Le document en format XML
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Ishikawa</name><affiliation wicri:level="1"><nlm:affiliation>AIDS Research Center, National Institute of Infectious Diseases, 1-23-1 Toyama Shinjuku, Tokyo 162-8640, Japan. kishikaw@nih.go.jp</nlm:affiliation><country xml:lang="fr">Japon</country><wicri:regionArea>AIDS Research Center, National Institute of Infectious Diseases, 1-23-1 Toyama Shinjuku, Tokyo 162-8640</wicri:regionArea><placeName><settlement type="city">Tokyo</settlement><region type="région">Région de Kantō</region></placeName></affiliation></author><author><name sortKey="Janssens, W" sort="Janssens, W" uniqKey="Janssens W" first="W" last="Janssens">W. Janssens</name></author><author><name sortKey="Banor, J S" sort="Banor, J S" uniqKey="Banor J" first="J S" last="Banor">J S Banor</name></author><author><name sortKey="Shinno, T" sort="Shinno, T" uniqKey="Shinno T" first="T" last="Shinno">T. Shinno</name></author><author><name sortKey="Piedade, J" sort="Piedade, J" uniqKey="Piedade J" first="J" last="Piedade">J. Piedade</name></author><author><name sortKey="Sata, T" sort="Sata, T" uniqKey="Sata T" first="T" last="Sata">T. Sata</name></author><author><name sortKey="Ampofo, W K" sort="Ampofo, W K" uniqKey="Ampofo W" first="W K" last="Ampofo">W K Ampofo</name></author><author><name sortKey="Brandful, J A" sort="Brandful, J A" uniqKey="Brandful J" first="J A" last="Brandful">J A Brandful</name></author><author><name sortKey="Koyanagi, Y" sort="Koyanagi, Y" uniqKey="Koyanagi Y" first="Y" last="Koyanagi">Y. Koyanagi</name></author><author><name sortKey="Yamamoto, N" sort="Yamamoto, N" uniqKey="Yamamoto N" first="N" last="Yamamoto">N. Yamamoto</name></author><author><name sortKey="Canas Ferreira, W F" sort="Canas Ferreira, W F" uniqKey="Canas Ferreira W" first="W F" last="Canas-Ferreira">W F Canas-Ferreira</name></author><author><name sortKey="Adu Sarkodie, Y" sort="Adu Sarkodie, Y" uniqKey="Adu Sarkodie Y" first="Y" last="Adu-Sarkodie">Y. Adu-Sarkodie</name></author><author><name sortKey="Kurata, T" sort="Kurata, T" uniqKey="Kurata T" first="T" last="Kurata">T. Kurata</name></author></analytic><series><title level="j">AIDS research and human retroviruses</title><idno type="ISSN">0889-2229</idno><imprint><date when="2001" type="published">2001</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>DNA, Viral (analysis)</term><term>Ghana (epidemiology)</term><term>Guinea-Bissau (epidemiology)</term><term>HIV Infections (epidemiology)</term><term>HIV Infections (virology)</term><term>HIV Long Terminal Repeat (genetics)</term><term>HIV-2 (classification)</term><term>HIV-2 (genetics)</term><term>Humans</term><term>Molecular Sequence Data</term><term>Phylogeny</term><term>Sequence Analysis, DNA</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>ADN viral (analyse)</term><term>Analyse de séquence d'ADN</term><term>Données de séquences moléculaires</term><term>Ghana (épidémiologie)</term><term>Guinée-Bissau (épidémiologie)</term><term>Humains</term><term>Infections à VIH (virologie)</term><term>Infections à VIH (épidémiologie)</term><term>Phylogénie</term><term>Répétition terminale longue du VIH (génétique)</term><term>VIH-2 (Virus de l'Immunodéficience Humaine de type 2) ()</term><term>VIH-2 (Virus de l'Immunodéficience Humaine de type 2) (génétique)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="analysis" xml:lang="en"><term>DNA, Viral</term></keywords><keywords scheme="MESH" type="geographic" qualifier="epidemiology" xml:lang="en"><term>Ghana</term><term>Guinea-Bissau</term></keywords><keywords scheme="MESH" qualifier="analyse" xml:lang="fr"><term>ADN viral</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>HIV-2</term></keywords><keywords scheme="MESH" qualifier="epidemiology" xml:lang="en"><term>HIV Infections</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>HIV Long Terminal Repeat</term><term>HIV-2</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Répétition terminale longue du VIH</term><term>VIH-2 (Virus de l'Immunodéficience Humaine de type 2)</term></keywords><keywords scheme="MESH" qualifier="virologie" xml:lang="fr"><term>Infections à VIH</term></keywords><keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>HIV Infections</term></keywords><keywords scheme="MESH" qualifier="épidémiologie" xml:lang="fr"><term>Ghana</term><term>Guinée-Bissau</term><term>Infections à VIH</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Humans</term><term>Molecular Sequence Data</term><term>Phylogeny</term><term>Sequence Analysis, DNA</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Analyse de séquence d'ADN</term><term>Données de séquences moléculaires</term><term>Humains</term><term>Phylogénie</term><term>VIH-2 (Virus de l'Immunodéficience Humaine de type 2)</term></keywords><keywords scheme="Wicri" type="geographic" xml:lang="fr"><term>Ghana</term><term>Guinée-Bissau</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">The phylogenetic variability of part of the long terminal repeat (LTR) region of HIV-2 strains isolated in 1995 from five individuals residing in Bissau, the capital city of Guinea-Bissau, and collected from seven persons from Kumasi, Ghana in 1996-1997, was analyzed. All Guinean samples and all but one Ghanaian sample clustered with HIV-2 subtype A. One Ghanaian sample (14%) was classified as HIV-2 subtype B. This study adds to previous reports on HIV-2 subtype distribution in West Africa indicating local prevalence of HIV-2 subtype B in Ivory Coast and neighboring Ghana.</div></front></TEI></record>Pour manipuler ce document sous Unix (Dilib)
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