Genetic analysis of HIV type 2 from Ghana and Guinea-Bissau, West Africa.
Identifieur interne : 000322 ( PubMed/Corpus ); précédent : 000321; suivant : 000323Genetic analysis of HIV type 2 from Ghana and Guinea-Bissau, West Africa.
Auteurs : K. Ishikawa ; W. Janssens ; J S Banor ; T. Shinno ; J. Piedade ; T. Sata ; W K Ampofo ; J A Brandful ; Y. Koyanagi ; N. Yamamoto ; W F Canas-Ferreira ; Y. Adu-Sarkodie ; T. KurataSource :
- AIDS research and human retroviruses [ 0889-2229 ] ; 2001.
English descriptors
- KwdEn :
- MESH :
- chemical , analysis : DNA, Viral.
- geographic , epidemiology : Ghana, Guinea-Bissau.
- classification : HIV-2.
- epidemiology : HIV Infections.
- genetics : HIV Long Terminal Repeat, HIV-2.
- virology : HIV Infections.
- Humans, Molecular Sequence Data, Phylogeny, Sequence Analysis, DNA.
Abstract
The phylogenetic variability of part of the long terminal repeat (LTR) region of HIV-2 strains isolated in 1995 from five individuals residing in Bissau, the capital city of Guinea-Bissau, and collected from seven persons from Kumasi, Ghana in 1996-1997, was analyzed. All Guinean samples and all but one Ghanaian sample clustered with HIV-2 subtype A. One Ghanaian sample (14%) was classified as HIV-2 subtype B. This study adds to previous reports on HIV-2 subtype distribution in West Africa indicating local prevalence of HIV-2 subtype B in Ivory Coast and neighboring Ghana.
DOI: 10.1089/088922201753342077
PubMed: 11779354
Links to Exploration step
pubmed:11779354Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Genetic analysis of HIV type 2 from Ghana and Guinea-Bissau, West Africa.</title><author><name sortKey="Ishikawa, K" sort="Ishikawa, K" uniqKey="Ishikawa K" first="K" last="Ishikawa">K. Ishikawa</name><affiliation><nlm:affiliation>AIDS Research Center, National Institute of Infectious Diseases, 1-23-1 Toyama Shinjuku, Tokyo 162-8640, Japan. kishikaw@nih.go.jp</nlm:affiliation></affiliation></author><author><name sortKey="Janssens, W" sort="Janssens, W" uniqKey="Janssens W" first="W" last="Janssens">W. Janssens</name></author><author><name sortKey="Banor, J S" sort="Banor, J S" uniqKey="Banor J" first="J S" last="Banor">J S Banor</name></author><author><name sortKey="Shinno, T" sort="Shinno, T" uniqKey="Shinno T" first="T" last="Shinno">T. Shinno</name></author><author><name sortKey="Piedade, J" sort="Piedade, J" uniqKey="Piedade J" first="J" last="Piedade">J. Piedade</name></author><author><name sortKey="Sata, T" sort="Sata, T" uniqKey="Sata T" first="T" last="Sata">T. Sata</name></author><author><name sortKey="Ampofo, W K" sort="Ampofo, W K" uniqKey="Ampofo W" first="W K" last="Ampofo">W K Ampofo</name></author><author><name sortKey="Brandful, J A" sort="Brandful, J A" uniqKey="Brandful J" first="J A" last="Brandful">J A Brandful</name></author><author><name sortKey="Koyanagi, Y" sort="Koyanagi, Y" uniqKey="Koyanagi Y" first="Y" last="Koyanagi">Y. Koyanagi</name></author><author><name sortKey="Yamamoto, N" sort="Yamamoto, N" uniqKey="Yamamoto N" first="N" last="Yamamoto">N. Yamamoto</name></author><author><name sortKey="Canas Ferreira, W F" sort="Canas Ferreira, W F" uniqKey="Canas Ferreira W" first="W F" last="Canas-Ferreira">W F Canas-Ferreira</name></author><author><name sortKey="Adu Sarkodie, Y" sort="Adu Sarkodie, Y" uniqKey="Adu Sarkodie Y" first="Y" last="Adu-Sarkodie">Y. Adu-Sarkodie</name></author><author><name sortKey="Kurata, T" sort="Kurata, T" uniqKey="Kurata T" first="T" last="Kurata">T. Kurata</name></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2001">2001</date><idno type="RBID">pubmed:11779354</idno><idno type="pmid">11779354</idno><idno type="doi">10.1089/088922201753342077</idno><idno type="wicri:Area/PubMed/Corpus">000322</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Corpus" wicri:corpus="PubMed">000322</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Genetic analysis of HIV type 2 from Ghana and Guinea-Bissau, West Africa.</title><author><name sortKey="Ishikawa, K" sort="Ishikawa, K" uniqKey="Ishikawa K" first="K" last="Ishikawa">K. Ishikawa</name><affiliation><nlm:affiliation>AIDS Research Center, National Institute of Infectious Diseases, 1-23-1 Toyama Shinjuku, Tokyo 162-8640, Japan. kishikaw@nih.go.jp</nlm:affiliation></affiliation></author><author><name sortKey="Janssens, W" sort="Janssens, W" uniqKey="Janssens W" first="W" last="Janssens">W. Janssens</name></author><author><name sortKey="Banor, J S" sort="Banor, J S" uniqKey="Banor J" first="J S" last="Banor">J S Banor</name></author><author><name sortKey="Shinno, T" sort="Shinno, T" uniqKey="Shinno T" first="T" last="Shinno">T. Shinno</name></author><author><name sortKey="Piedade, J" sort="Piedade, J" uniqKey="Piedade J" first="J" last="Piedade">J. Piedade</name></author><author><name sortKey="Sata, T" sort="Sata, T" uniqKey="Sata T" first="T" last="Sata">T. Sata</name></author><author><name sortKey="Ampofo, W K" sort="Ampofo, W K" uniqKey="Ampofo W" first="W K" last="Ampofo">W K Ampofo</name></author><author><name sortKey="Brandful, J A" sort="Brandful, J A" uniqKey="Brandful J" first="J A" last="Brandful">J A Brandful</name></author><author><name sortKey="Koyanagi, Y" sort="Koyanagi, Y" uniqKey="Koyanagi Y" first="Y" last="Koyanagi">Y. Koyanagi</name></author><author><name sortKey="Yamamoto, N" sort="Yamamoto, N" uniqKey="Yamamoto N" first="N" last="Yamamoto">N. Yamamoto</name></author><author><name sortKey="Canas Ferreira, W F" sort="Canas Ferreira, W F" uniqKey="Canas Ferreira W" first="W F" last="Canas-Ferreira">W F Canas-Ferreira</name></author><author><name sortKey="Adu Sarkodie, Y" sort="Adu Sarkodie, Y" uniqKey="Adu Sarkodie Y" first="Y" last="Adu-Sarkodie">Y. Adu-Sarkodie</name></author><author><name sortKey="Kurata, T" sort="Kurata, T" uniqKey="Kurata T" first="T" last="Kurata">T. Kurata</name></author></analytic><series><title level="j">AIDS research and human retroviruses</title><idno type="ISSN">0889-2229</idno><imprint><date when="2001" type="published">2001</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>DNA, Viral (analysis)</term><term>Ghana (epidemiology)</term><term>Guinea-Bissau (epidemiology)</term><term>HIV Infections (epidemiology)</term><term>HIV Infections (virology)</term><term>HIV Long Terminal Repeat (genetics)</term><term>HIV-2 (classification)</term><term>HIV-2 (genetics)</term><term>Humans</term><term>Molecular Sequence Data</term><term>Phylogeny</term><term>Sequence Analysis, DNA</term></keywords><keywords scheme="MESH" type="chemical" qualifier="analysis" xml:lang="en"><term>DNA, Viral</term></keywords><keywords scheme="MESH" type="geographic" qualifier="epidemiology" xml:lang="en"><term>Ghana</term><term>Guinea-Bissau</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>HIV-2</term></keywords><keywords scheme="MESH" qualifier="epidemiology" xml:lang="en"><term>HIV Infections</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>HIV Long Terminal Repeat</term><term>HIV-2</term></keywords><keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>HIV Infections</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Humans</term><term>Molecular Sequence Data</term><term>Phylogeny</term><term>Sequence Analysis, DNA</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">The phylogenetic variability of part of the long terminal repeat (LTR) region of HIV-2 strains isolated in 1995 from five individuals residing in Bissau, the capital city of Guinea-Bissau, and collected from seven persons from Kumasi, Ghana in 1996-1997, was analyzed. All Guinean samples and all but one Ghanaian sample clustered with HIV-2 subtype A. One Ghanaian sample (14%) was classified as HIV-2 subtype B. This study adds to previous reports on HIV-2 subtype distribution in West Africa indicating local prevalence of HIV-2 subtype B in Ivory Coast and neighboring Ghana.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">11779354</PMID><DateCreated><Year>2002</Year><Month>01</Month><Day>07</Day></DateCreated><DateCompleted><Year>2002</Year><Month>02</Month><Day>12</Day></DateCompleted><DateRevised><Year>2006</Year><Month>11</Month><Day>15</Day></DateRevised><Article PubModel="Print"><Journal><ISSN IssnType="Print">0889-2229</ISSN><JournalIssue CitedMedium="Print"><Volume>17</Volume><Issue>17</Issue><PubDate><Year>2001</Year><Month>Nov</Month><Day>20</Day></PubDate></JournalIssue><Title>AIDS research and human retroviruses</Title><ISOAbbreviation>AIDS Res. Hum. Retroviruses</ISOAbbreviation></Journal><ArticleTitle>Genetic analysis of HIV type 2 from Ghana and Guinea-Bissau, West Africa.</ArticleTitle><Pagination><MedlinePgn>1661-3</MedlinePgn></Pagination><Abstract><AbstractText>The phylogenetic variability of part of the long terminal repeat (LTR) region of HIV-2 strains isolated in 1995 from five individuals residing in Bissau, the capital city of Guinea-Bissau, and collected from seven persons from Kumasi, Ghana in 1996-1997, was analyzed. All Guinean samples and all but one Ghanaian sample clustered with HIV-2 subtype A. One Ghanaian sample (14%) was classified as HIV-2 subtype B. This study adds to previous reports on HIV-2 subtype distribution in West Africa indicating local prevalence of HIV-2 subtype B in Ivory Coast and neighboring Ghana.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Ishikawa</LastName><ForeName>K</ForeName><Initials>K</Initials><AffiliationInfo><Affiliation>AIDS Research Center, National Institute of Infectious Diseases, 1-23-1 Toyama Shinjuku, Tokyo 162-8640, Japan. kishikaw@nih.go.jp</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Janssens</LastName><ForeName>W</ForeName><Initials>W</Initials></Author><Author ValidYN="Y"><LastName>Banor</LastName><ForeName>J S</ForeName><Initials>JS</Initials></Author><Author ValidYN="Y"><LastName>Shinno</LastName><ForeName>T</ForeName><Initials>T</Initials></Author><Author ValidYN="Y"><LastName>Piedade</LastName><ForeName>J</ForeName><Initials>J</Initials></Author><Author ValidYN="Y"><LastName>Sata</LastName><ForeName>T</ForeName><Initials>T</Initials></Author><Author ValidYN="Y"><LastName>Ampofo</LastName><ForeName>W K</ForeName><Initials>WK</Initials></Author><Author ValidYN="Y"><LastName>Brandful</LastName><ForeName>J A</ForeName><Initials>JA</Initials></Author><Author ValidYN="Y"><LastName>Koyanagi</LastName><ForeName>Y</ForeName><Initials>Y</Initials></Author><Author ValidYN="Y"><LastName>Yamamoto</LastName><ForeName>N</ForeName><Initials>N</Initials></Author><Author ValidYN="Y"><LastName>Canas-Ferreira</LastName><ForeName>W F</ForeName><Initials>WF</Initials></Author><Author ValidYN="Y"><LastName>Adu-Sarkodie</LastName><ForeName>Y</ForeName><Initials>Y</Initials></Author><Author ValidYN="Y"><LastName>Kurata</LastName><ForeName>T</ForeName><Initials>T</Initials></Author></AuthorList><Language>eng</Language><DataBankList CompleteYN="Y"><DataBank><DataBankName>GENBANK</DataBankName><AccessionNumberList><AccessionNumber>AY039114</AccessionNumber><AccessionNumber>AY039115</AccessionNumber><AccessionNumber>AY039116</AccessionNumber><AccessionNumber>AY039117</AccessionNumber><AccessionNumber>AY039118</AccessionNumber><AccessionNumber>AY039119</AccessionNumber><AccessionNumber>AY039120</AccessionNumber><AccessionNumber>AY039121</AccessionNumber><AccessionNumber>AY039122</AccessionNumber><AccessionNumber>AY039123</AccessionNumber><AccessionNumber>AY039124</AccessionNumber><AccessionNumber>AY039125</AccessionNumber></AccessionNumberList></DataBank></DataBankList><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList></Article><MedlineJournalInfo><Country>United States</Country><MedlineTA>AIDS Res Hum Retroviruses</MedlineTA><NlmUniqueID>8709376</NlmUniqueID><ISSNLinking>0889-2229</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004279">DNA, Viral</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><CitationSubset>X</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D004279" MajorTopicYN="N">DNA, Viral</DescriptorName><QualifierName UI="Q000032" MajorTopicYN="N">analysis</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D005869" MajorTopicYN="N" Type="Geographic">Ghana</DescriptorName><QualifierName UI="Q000453" MajorTopicYN="N">epidemiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D006169" MajorTopicYN="N" Type="Geographic">Guinea-Bissau</DescriptorName><QualifierName UI="Q000453" MajorTopicYN="N">epidemiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D015658" MajorTopicYN="N">HIV Infections</DescriptorName><QualifierName UI="Q000453" MajorTopicYN="Y">epidemiology</QualifierName><QualifierName UI="Q000821" MajorTopicYN="N">virology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D016325" MajorTopicYN="N">HIV Long Terminal Repeat</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D015498" MajorTopicYN="N">HIV-2</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="Y">classification</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D006801" MajorTopicYN="N">Humans</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D008969" MajorTopicYN="N">Molecular Sequence Data</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010802" MajorTopicYN="N">Phylogeny</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D017422" MajorTopicYN="N">Sequence Analysis, DNA</DescriptorName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="pubmed"><Year>2002</Year><Month>1</Month><Day>10</Day><Hour>10</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2002</Year><Month>2</Month><Day>13</Day><Hour>10</Hour><Minute>1</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2002</Year><Month>1</Month><Day>10</Day><Hour>10</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">11779354</ArticleId><ArticleId IdType="doi">10.1089/088922201753342077</ArticleId></ArticleIdList></PubmedData></pubmed></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Wicri/Sante/explor/SidaGhanaV1/Data/PubMed/Corpus
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000322 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/PubMed/Corpus/biblio.hfd -nk 000322 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Wicri/Sante
|area= SidaGhanaV1
|flux= PubMed
|étape= Corpus
|type= RBID
|clé= pubmed:11779354
|texte= Genetic analysis of HIV type 2 from Ghana and Guinea-Bissau, West Africa.
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/PubMed/Corpus/RBID.i -Sk "pubmed:11779354" \
| HfdSelect -Kh $EXPLOR_AREA/Data/PubMed/Corpus/biblio.hfd \
| NlmPubMed2Wicri -a SidaGhanaV1
| This area was generated with Dilib version V0.6.31. |  |