The viral etiology of an influenza-like illness during the 2009 pandemic.
Identifieur interne : 000C94 ( PubMed/Corpus ); précédent : 000C93; suivant : 000C95The viral etiology of an influenza-like illness during the 2009 pandemic.
Auteurs : S D Thiberville ; L. Ninove ; V. Vu Hai ; E. Botelho-Nevers ; C. Gazin ; L. Thirion ; N. Salez ; X. De Lamballerie ; R. Charrel ; P. BrouquiSource :
- Journal of medical virology [ 1096-9071 ] ; 2012.
English descriptors
- KwdEn :
- Adolescent, Adult, Aged, Child, Female, Humans, Influenza, Human (epidemiology), Influenza, Human (virology), Male, Middle Aged, Nose (virology), Prevalence, RNA Viruses (classification), RNA Viruses (genetics), RNA Viruses (isolation & purification), Real-Time Polymerase Chain Reaction, Respiratory Tract Diseases (epidemiology), Respiratory Tract Diseases (virology), Reverse Transcriptase Polymerase Chain Reaction, Young Adult.
- MESH :
- classification : RNA Viruses.
- epidemiology : Influenza, Human, Respiratory Tract Diseases.
- genetics : RNA Viruses.
- isolation & purification : RNA Viruses.
- virology : Influenza, Human, Nose, Respiratory Tract Diseases.
- Adolescent, Adult, Aged, Child, Female, Humans, Male, Middle Aged, Prevalence, Real-Time Polymerase Chain Reaction, Reverse Transcriptase Polymerase Chain Reaction, Young Adult.
Abstract
Many viruses are known to cause influenza-like illness (ILI); however, in nearly 50% of patients, the etiologic agent remains unknown. The distribution of viruses in patients with ILI was investigated during the 2009 A/H1N1 influenza pandemic (A/H1N1p). From June 2009 to January 2010, 660 patients with suspected influenza were questioned and examined, and nasal swabs were collected. All patient samples were tested for influenza virus, and 286 negative nasal swabs were tested further for 18 other respiratory viruses using real-time RT-PCR. Two waves of ILI were observed in the epidemic curve (weeks 35-42 and 42-49). At least eight viruses co-circulated during this period: human rhinovirus (HRV) (58), parainfluenza 1-4 viruses (PIV) (9), human Coronavirus (hCoV) OC43 (9), enterovirus (5), adenovirus (AdV) (4), and human metapneumovirus (hMPV) (2); however, 204 samples remained negative for all viruses tested. ILI symptoms, according to the Centers for Disease Control and Prevention criteria for ILI definition, were reported in 75% of cases. These patients had positive swabs for A/H1N1p, HRV, hCoV-OC43, PIV, AdV, and hMPV without significant difference with non-ILI patients. This study found that many respiratory viruses circulated during this period and that the A/H1N1p did not impact on the kinetics of other respiratory viruses. The proportion of non-documented cases remains high. ILI could not distinguish A/H1N1p infection from that due to other respiratory viruses. However, in multivariate anlaysis, cough, chills, hyperemia, and dyspnea were associated significantly with influenza virus versus other respiratory viruses.
DOI: 10.1002/jmv.23265
PubMed: 22585724
Links to Exploration step
pubmed:22585724Le document en format XML
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Gazin</name></author><author><name sortKey="Thirion, L" sort="Thirion, L" uniqKey="Thirion L" first="L" last="Thirion">L. Thirion</name></author><author><name sortKey="Salez, N" sort="Salez, N" uniqKey="Salez N" first="N" last="Salez">N. Salez</name></author><author><name sortKey="De Lamballerie, X" sort="De Lamballerie, X" uniqKey="De Lamballerie X" first="X" last="De Lamballerie">X. De Lamballerie</name></author><author><name sortKey="Charrel, R" sort="Charrel, R" uniqKey="Charrel R" first="R" last="Charrel">R. Charrel</name></author><author><name sortKey="Brouqui, P" sort="Brouqui, P" uniqKey="Brouqui P" first="P" last="Brouqui">P. Brouqui</name></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2012">2012</date><idno type="RBID">pubmed:22585724</idno><idno type="pmid">22585724</idno><idno type="doi">10.1002/jmv.23265</idno><idno type="wicri:Area/PubMed/Corpus">000C94</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Corpus" wicri:corpus="PubMed">000C94</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">The viral etiology of an influenza-like illness during the 2009 pandemic.</title><author><name sortKey="Thiberville, S D" sort="Thiberville, S D" uniqKey="Thiberville S" first="S D" last="Thiberville">S D Thiberville</name><affiliation><nlm:affiliation>UMR 190 (Aix-Marseille Univ IRD EHESP), Emergence des Pathologies Virales, Marseille, France.</nlm:affiliation></affiliation></author><author><name sortKey="Ninove, L" sort="Ninove, L" uniqKey="Ninove L" first="L" last="Ninove">L. Ninove</name></author><author><name sortKey="Vu Hai, V" sort="Vu Hai, V" uniqKey="Vu Hai V" first="V" last="Vu Hai">V. Vu Hai</name></author><author><name sortKey="Botelho Nevers, E" sort="Botelho Nevers, E" uniqKey="Botelho Nevers E" first="E" last="Botelho-Nevers">E. Botelho-Nevers</name></author><author><name sortKey="Gazin, C" sort="Gazin, C" uniqKey="Gazin C" first="C" last="Gazin">C. Gazin</name></author><author><name sortKey="Thirion, L" sort="Thirion, L" uniqKey="Thirion L" first="L" last="Thirion">L. Thirion</name></author><author><name sortKey="Salez, N" sort="Salez, N" uniqKey="Salez N" first="N" last="Salez">N. Salez</name></author><author><name sortKey="De Lamballerie, X" sort="De Lamballerie, X" uniqKey="De Lamballerie X" first="X" last="De Lamballerie">X. De Lamballerie</name></author><author><name sortKey="Charrel, R" sort="Charrel, R" uniqKey="Charrel R" first="R" last="Charrel">R. Charrel</name></author><author><name sortKey="Brouqui, P" sort="Brouqui, P" uniqKey="Brouqui P" first="P" last="Brouqui">P. Brouqui</name></author></analytic><series><title level="j">Journal of medical virology</title><idno type="eISSN">1096-9071</idno><imprint><date when="2012" type="published">2012</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Adolescent</term><term>Adult</term><term>Aged</term><term>Child</term><term>Female</term><term>Humans</term><term>Influenza, Human (epidemiology)</term><term>Influenza, Human (virology)</term><term>Male</term><term>Middle Aged</term><term>Nose (virology)</term><term>Prevalence</term><term>RNA Viruses (classification)</term><term>RNA Viruses (genetics)</term><term>RNA Viruses (isolation & purification)</term><term>Real-Time Polymerase Chain Reaction</term><term>Respiratory Tract Diseases (epidemiology)</term><term>Respiratory Tract Diseases (virology)</term><term>Reverse Transcriptase Polymerase Chain Reaction</term><term>Young Adult</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>RNA Viruses</term></keywords><keywords scheme="MESH" qualifier="epidemiology" xml:lang="en"><term>Influenza, Human</term><term>Respiratory Tract Diseases</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>RNA Viruses</term></keywords><keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>RNA Viruses</term></keywords><keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Influenza, Human</term><term>Nose</term><term>Respiratory Tract Diseases</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Adolescent</term><term>Adult</term><term>Aged</term><term>Child</term><term>Female</term><term>Humans</term><term>Male</term><term>Middle Aged</term><term>Prevalence</term><term>Real-Time Polymerase Chain Reaction</term><term>Reverse Transcriptase Polymerase Chain Reaction</term><term>Young Adult</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Many viruses are known to cause influenza-like illness (ILI); however, in nearly 50% of patients, the etiologic agent remains unknown. The distribution of viruses in patients with ILI was investigated during the 2009 A/H1N1 influenza pandemic (A/H1N1p). From June 2009 to January 2010, 660 patients with suspected influenza were questioned and examined, and nasal swabs were collected. All patient samples were tested for influenza virus, and 286 negative nasal swabs were tested further for 18 other respiratory viruses using real-time RT-PCR. Two waves of ILI were observed in the epidemic curve (weeks 35-42 and 42-49). At least eight viruses co-circulated during this period: human rhinovirus (HRV) (58), parainfluenza 1-4 viruses (PIV) (9), human Coronavirus (hCoV) OC43 (9), enterovirus (5), adenovirus (AdV) (4), and human metapneumovirus (hMPV) (2); however, 204 samples remained negative for all viruses tested. ILI symptoms, according to the Centers for Disease Control and Prevention criteria for ILI definition, were reported in 75% of cases. These patients had positive swabs for A/H1N1p, HRV, hCoV-OC43, PIV, AdV, and hMPV without significant difference with non-ILI patients. This study found that many respiratory viruses circulated during this period and that the A/H1N1p did not impact on the kinetics of other respiratory viruses. The proportion of non-documented cases remains high. ILI could not distinguish A/H1N1p infection from that due to other respiratory viruses. However, in multivariate anlaysis, cough, chills, hyperemia, and dyspnea were associated significantly with influenza virus versus other respiratory viruses.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">22585724</PMID><DateCompleted><Year>2012</Year><Month>09</Month><Day>05</Day></DateCompleted><DateRevised><Year>2020</Year><Month>04</Month><Day>22</Day></DateRevised><Article PubModel="Print"><Journal><ISSN IssnType="Electronic">1096-9071</ISSN><JournalIssue CitedMedium="Internet"><Volume>84</Volume><Issue>7</Issue><PubDate><Year>2012</Year><Month>Jul</Month></PubDate></JournalIssue><Title>Journal of medical virology</Title><ISOAbbreviation>J. Med. Virol.</ISOAbbreviation></Journal><ArticleTitle>The viral etiology of an influenza-like illness during the 2009 pandemic.</ArticleTitle><Pagination><MedlinePgn>1071-9</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1002/jmv.23265</ELocationID><Abstract><AbstractText>Many viruses are known to cause influenza-like illness (ILI); however, in nearly 50% of patients, the etiologic agent remains unknown. The distribution of viruses in patients with ILI was investigated during the 2009 A/H1N1 influenza pandemic (A/H1N1p). From June 2009 to January 2010, 660 patients with suspected influenza were questioned and examined, and nasal swabs were collected. All patient samples were tested for influenza virus, and 286 negative nasal swabs were tested further for 18 other respiratory viruses using real-time RT-PCR. Two waves of ILI were observed in the epidemic curve (weeks 35-42 and 42-49). At least eight viruses co-circulated during this period: human rhinovirus (HRV) (58), parainfluenza 1-4 viruses (PIV) (9), human Coronavirus (hCoV) OC43 (9), enterovirus (5), adenovirus (AdV) (4), and human metapneumovirus (hMPV) (2); however, 204 samples remained negative for all viruses tested. ILI symptoms, according to the Centers for Disease Control and Prevention criteria for ILI definition, were reported in 75% of cases. These patients had positive swabs for A/H1N1p, HRV, hCoV-OC43, PIV, AdV, and hMPV without significant difference with non-ILI patients. This study found that many respiratory viruses circulated during this period and that the A/H1N1p did not impact on the kinetics of other respiratory viruses. The proportion of non-documented cases remains high. ILI could not distinguish A/H1N1p infection from that due to other respiratory viruses. However, in multivariate anlaysis, cough, chills, hyperemia, and dyspnea were associated significantly with influenza virus versus other respiratory viruses.</AbstractText><CopyrightInformation>Copyright © 2012 Wiley Periodicals, Inc.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Thiberville</LastName><ForeName>S D</ForeName><Initials>SD</Initials><AffiliationInfo><Affiliation>UMR 190 (Aix-Marseille Univ IRD EHESP), Emergence des Pathologies Virales, Marseille, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ninove</LastName><ForeName>L</ForeName><Initials>L</Initials></Author><Author ValidYN="Y"><LastName>Vu Hai</LastName><ForeName>V</ForeName><Initials>V</Initials></Author><Author ValidYN="Y"><LastName>Botelho-Nevers</LastName><ForeName>E</ForeName><Initials>E</Initials></Author><Author ValidYN="Y"><LastName>Gazin</LastName><ForeName>C</ForeName><Initials>C</Initials></Author><Author ValidYN="Y"><LastName>Thirion</LastName><ForeName>L</ForeName><Initials>L</Initials></Author><Author ValidYN="Y"><LastName>Salez</LastName><ForeName>N</ForeName><Initials>N</Initials></Author><Author ValidYN="Y"><LastName>de Lamballerie</LastName><ForeName>X</ForeName><Initials>X</Initials></Author><Author ValidYN="Y"><LastName>Charrel</LastName><ForeName>R</ForeName><Initials>R</Initials></Author><Author ValidYN="Y"><LastName>Brouqui</LastName><ForeName>P</ForeName><Initials>P</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList></Article><MedlineJournalInfo><Country>United States</Country><MedlineTA>J Med Virol</MedlineTA><NlmUniqueID>7705876</NlmUniqueID><ISSNLinking>0146-6615</ISSNLinking></MedlineJournalInfo><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D000293" MajorTopicYN="N">Adolescent</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D000328" MajorTopicYN="N">Adult</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D000368" MajorTopicYN="N">Aged</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D002648" MajorTopicYN="N">Child</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005260" MajorTopicYN="N">Female</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D006801" MajorTopicYN="N">Humans</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D007251" MajorTopicYN="N">Influenza, Human</DescriptorName><QualifierName UI="Q000453" MajorTopicYN="Y">epidemiology</QualifierName><QualifierName UI="Q000821" MajorTopicYN="Y">virology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D008297" MajorTopicYN="N">Male</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D008875" MajorTopicYN="N">Middle 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