Serveur d'exploration sur les pandémies grippales

Attention, ce site est en cours de développement !
Attention, site généré par des moyens informatiques à partir de corpus bruts.
Les informations ne sont donc pas validées.

Origin and evolution of the 1918 “Spanish” influenza virus hemagglutinin gene

Identifieur interne : 002177 ( Ncbi/Checkpoint ); précédent : 002176; suivant : 002178

Origin and evolution of the 1918 “Spanish” influenza virus hemagglutinin gene

Auteurs : Ann H. Reid ; Thomas G. Fanning ; Johan V. Hultin ; Jeffery K. Taubenberger

Source :

RBID : PMC:15547

Descripteurs français

English descriptors

Abstract

The “Spanish” influenza pandemic killed over 20 million people in 1918 and 1919, making it the worst infectious pandemic in history. Here, we report the complete sequence of the hemagglutinin (HA) gene of the 1918 virus. Influenza RNA for the analysis was isolated from a formalin-fixed, paraffin-embedded lung tissue sample prepared during the autopsy of a victim of the influenza pandemic in 1918. Influenza RNA was also isolated from lung tissue samples from two additional victims of the lethal 1918 influenza: one formalin-fixed, paraffin-embedded sample and one frozen sample obtained by in situ biopsy of the lung of a victim buried in permafrost since 1918. The complete coding sequence of the A/South Carolina/1/18 HA gene was obtained. The HA1 domain sequence was confirmed by using the two additional isolates (A/New York/1/18 and A/Brevig Mission/1/18). The sequences show little variation. Phylogenetic analyses suggest that the 1918 virus HA gene, although more closely related to avian strains than any other mammalian sequence, is mammalian and may have been adapting in humans before 1918.


Url:
PubMed: 9990079
PubMed Central: 15547


Affiliations:


Links toward previous steps (curation, corpus...)


Links to Exploration step

PMC:15547

Le document en format XML

<record>
<TEI>
<teiHeader>
<fileDesc>
<titleStmt>
<title xml:lang="en">Origin and evolution of the 1918 “Spanish” influenza virus hemagglutinin gene</title>
<author>
<name sortKey="Reid, Ann H" sort="Reid, Ann H" uniqKey="Reid A" first="Ann H." last="Reid">Ann H. Reid</name>
</author>
<author>
<name sortKey="Fanning, Thomas G" sort="Fanning, Thomas G" uniqKey="Fanning T" first="Thomas G." last="Fanning">Thomas G. Fanning</name>
</author>
<author>
<name sortKey="Hultin, Johan V" sort="Hultin, Johan V" uniqKey="Hultin J" first="Johan V." last="Hultin">Johan V. Hultin</name>
</author>
<author>
<name sortKey="Taubenberger, Jeffery K" sort="Taubenberger, Jeffery K" uniqKey="Taubenberger J" first="Jeffery K." last="Taubenberger">Jeffery K. Taubenberger</name>
</author>
</titleStmt>
<publicationStmt>
<idno type="wicri:source">PMC</idno>
<idno type="pmid">9990079</idno>
<idno type="pmc">15547</idno>
<idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC15547</idno>
<idno type="RBID">PMC:15547</idno>
<date when="1999">1999</date>
<idno type="wicri:Area/Pmc/Corpus">000160</idno>
<idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Corpus" wicri:corpus="PMC">000160</idno>
<idno type="wicri:Area/Pmc/Curation">000160</idno>
<idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Curation">000160</idno>
<idno type="wicri:Area/Pmc/Checkpoint">000F53</idno>
<idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Checkpoint">000F53</idno>
<idno type="wicri:source">PubMed</idno>
<idno type="RBID">pubmed:9990079</idno>
<idno type="wicri:Area/PubMed/Corpus">002020</idno>
<idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Corpus" wicri:corpus="PubMed">002020</idno>
<idno type="wicri:Area/PubMed/Curation">002020</idno>
<idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Curation">002020</idno>
<idno type="wicri:Area/PubMed/Checkpoint">001D91</idno>
<idno type="wicri:explorRef" wicri:stream="Checkpoint" wicri:step="PubMed">001D91</idno>
<idno type="wicri:Area/Ncbi/Merge">002177</idno>
<idno type="wicri:Area/Ncbi/Curation">002177</idno>
<idno type="wicri:Area/Ncbi/Checkpoint">002177</idno>
</publicationStmt>
<sourceDesc>
<biblStruct>
<analytic>
<title xml:lang="en" level="a" type="main">Origin and evolution of the 1918 “Spanish” influenza virus hemagglutinin gene</title>
<author>
<name sortKey="Reid, Ann H" sort="Reid, Ann H" uniqKey="Reid A" first="Ann H." last="Reid">Ann H. Reid</name>
</author>
<author>
<name sortKey="Fanning, Thomas G" sort="Fanning, Thomas G" uniqKey="Fanning T" first="Thomas G." last="Fanning">Thomas G. Fanning</name>
</author>
<author>
<name sortKey="Hultin, Johan V" sort="Hultin, Johan V" uniqKey="Hultin J" first="Johan V." last="Hultin">Johan V. Hultin</name>
</author>
<author>
<name sortKey="Taubenberger, Jeffery K" sort="Taubenberger, Jeffery K" uniqKey="Taubenberger J" first="Jeffery K." last="Taubenberger">Jeffery K. Taubenberger</name>
</author>
</analytic>
<series>
<title level="j">Proceedings of the National Academy of Sciences of the United States of America</title>
<idno type="ISSN">0027-8424</idno>
<idno type="eISSN">1091-6490</idno>
<imprint>
<date when="1999">1999</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc>
<textClass>
<keywords scheme="KwdEn" xml:lang="en">
<term>Adult</term>
<term>Amino Acid Sequence</term>
<term>Base Sequence</term>
<term>Evolution, Molecular</term>
<term>Hemagglutinin Glycoproteins, Influenza Virus (genetics)</term>
<term>History, 20th Century</term>
<term>Humans</term>
<term>Influenza A virus (genetics)</term>
<term>Influenza, Human (history)</term>
<term>Influenza, Human (virology)</term>
<term>Male</term>
<term>Molecular Sequence Data</term>
<term>Phylogeny</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr">
<term>Adulte</term>
<term>Données de séquences moléculaires</term>
<term>Glycoprotéine hémagglutinine du virus influenza (génétique)</term>
<term>Grippe humaine (histoire)</term>
<term>Grippe humaine (virologie)</term>
<term>Histoire du 20ème siècle</term>
<term>Humains</term>
<term>Mâle</term>
<term>Phylogénie</term>
<term>Séquence d'acides aminés</term>
<term>Séquence nucléotidique</term>
<term>Virus de la grippe A (génétique)</term>
<term>Évolution moléculaire</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en">
<term>Hemagglutinin Glycoproteins, Influenza Virus</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en">
<term>Influenza A virus</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr">
<term>Glycoprotéine hémagglutinine du virus influenza</term>
<term>Virus de la grippe A</term>
</keywords>
<keywords scheme="MESH" qualifier="histoire" xml:lang="fr">
<term>Grippe humaine</term>
</keywords>
<keywords scheme="MESH" qualifier="history" xml:lang="en">
<term>Influenza, Human</term>
</keywords>
<keywords scheme="MESH" qualifier="virologie" xml:lang="fr">
<term>Grippe humaine</term>
</keywords>
<keywords scheme="MESH" qualifier="virology" xml:lang="en">
<term>Influenza, Human</term>
</keywords>
<keywords scheme="MESH" xml:lang="en">
<term>Adult</term>
<term>Amino Acid Sequence</term>
<term>Base Sequence</term>
<term>Evolution, Molecular</term>
<term>History, 20th Century</term>
<term>Humans</term>
<term>Male</term>
<term>Molecular Sequence Data</term>
<term>Phylogeny</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr">
<term>Adulte</term>
<term>Données de séquences moléculaires</term>
<term>Histoire du 20ème siècle</term>
<term>Humains</term>
<term>Mâle</term>
<term>Phylogénie</term>
<term>Séquence d'acides aminés</term>
<term>Séquence nucléotidique</term>
<term>Évolution moléculaire</term>
</keywords>
</textClass>
</profileDesc>
</teiHeader>
<front>
<div type="abstract" xml:lang="en">
<p>The “Spanish” influenza pandemic killed over 20 million people in 1918 and 1919, making it the worst infectious pandemic in history. Here, we report the complete sequence of the hemagglutinin (HA) gene of the 1918 virus. Influenza RNA for the analysis was isolated from a formalin-fixed, paraffin-embedded lung tissue sample prepared during the autopsy of a victim of the influenza pandemic in 1918. Influenza RNA was also isolated from lung tissue samples from two additional victims of the lethal 1918 influenza: one formalin-fixed, paraffin-embedded sample and one frozen sample obtained by
<italic>in situ</italic>
biopsy of the lung of a victim buried in permafrost since 1918. The complete coding sequence of the A/South Carolina/1/18 HA gene was obtained. The HA1 domain sequence was confirmed by using the two additional isolates (A/New York/1/18 and A/Brevig Mission/1/18). The sequences show little variation. Phylogenetic analyses suggest that the 1918 virus HA gene, although more closely related to avian strains than any other mammalian sequence, is mammalian and may have been adapting in humans before 1918.</p>
</div>
</front>
</TEI>
<affiliations>
<list></list>
<tree>
<noCountry>
<name sortKey="Fanning, Thomas G" sort="Fanning, Thomas G" uniqKey="Fanning T" first="Thomas G." last="Fanning">Thomas G. Fanning</name>
<name sortKey="Hultin, Johan V" sort="Hultin, Johan V" uniqKey="Hultin J" first="Johan V." last="Hultin">Johan V. Hultin</name>
<name sortKey="Reid, Ann H" sort="Reid, Ann H" uniqKey="Reid A" first="Ann H." last="Reid">Ann H. Reid</name>
<name sortKey="Taubenberger, Jeffery K" sort="Taubenberger, Jeffery K" uniqKey="Taubenberger J" first="Jeffery K." last="Taubenberger">Jeffery K. Taubenberger</name>
</noCountry>
</tree>
</affiliations>
</record>

Pour manipuler ce document sous Unix (Dilib)

EXPLOR_STEP=$WICRI_ROOT/Sante/explor/PandemieGrippaleV1/Data/Ncbi/Checkpoint
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 002177 | SxmlIndent | more

Ou

HfdSelect -h $EXPLOR_AREA/Data/Ncbi/Checkpoint/biblio.hfd -nk 002177 | SxmlIndent | more

Pour mettre un lien sur cette page dans le réseau Wicri

{{Explor lien
   |wiki=    Sante
   |area=    PandemieGrippaleV1
   |flux=    Ncbi
   |étape=   Checkpoint
   |type=    RBID
   |clé=     PMC:15547
   |texte=   Origin and evolution of the 1918 “Spanish” influenza virus
 hemagglutinin gene
}}

Pour générer des pages wiki

HfdIndexSelect -h $EXPLOR_AREA/Data/Ncbi/Checkpoint/RBID.i   -Sk "pubmed:9990079" \
       | HfdSelect -Kh $EXPLOR_AREA/Data/Ncbi/Checkpoint/biblio.hfd   \
       | NlmPubMed2Wicri -a PandemieGrippaleV1 

Wicri

This area was generated with Dilib version V0.6.34.
Data generation: Wed Jun 10 11:04:28 2020. Site generation: Sun Mar 28 09:10:28 2021