Global migration of influenza A viruses in swine
Identifieur interne : 001999 ( Ncbi/Checkpoint ); précédent : 001998; suivant : 001A00Global migration of influenza A viruses in swine
Auteurs : Martha I. Nelson [États-Unis] ; Cécile Viboud [États-Unis] ; Amy L. Vincent [États-Unis] ; Marie R. Culhane [États-Unis] ; Susan E. Detmer [Canada] ; David E. Wentworth ; Andrew Rambaut [États-Unis, Royaume-Uni] ; Marc A. Suchard [États-Unis] ; Edward C. Holmes [Australie] ; Philippe Lemey [Belgique]Source :
- Nature communications [ 2041-1723 ] ; 2015.
Descripteurs français
- KwdFr :
- ARN viral (génétique), Amérique du Nord, Amérique latine, Animaux, Asie, Canada, Chine, Commerce, Données de séquences moléculaires, Europe, Infections à Orthomyxoviridae (médecine vétérinaire), Infections à Orthomyxoviridae (virologie), Infections à Orthomyxoviridae (épidémiologie), Internationalité, Maladies des porcs (virologie), Maladies des porcs (épidémiologie), Mexique, Suidae (virologie), Séquence nucléotidique, Virus de la grippe A (génétique), Épidémiologie moléculaire, États-Unis d'Amérique.
- MESH :
- génétique : ARN viral, Virus de la grippe A.
- médecine vétérinaire : Infections à Orthomyxoviridae.
- virologie : Infections à Orthomyxoviridae, Maladies des porcs, Suidae.
- épidémiologie : Infections à Orthomyxoviridae, Maladies des porcs.
- Amérique du Nord, Amérique latine, Animaux, Asie, Canada, Chine, Commerce, Données de séquences moléculaires, Europe, Internationalité, Mexique, Séquence nucléotidique, Épidémiologie moléculaire, États-Unis d'Amérique.
- Wicri :
- geographic : Canada, République populaire de Chine, Mexique, États-Unis.
English descriptors
- KwdEn :
- Animals, Asia, Base Sequence, Canada, China, Commerce, Europe, Influenza A virus (genetics), Internationality, Latin America, Mexico, Molecular Epidemiology, Molecular Sequence Data, North America, Orthomyxoviridae Infections (epidemiology), Orthomyxoviridae Infections (veterinary), Orthomyxoviridae Infections (virology), RNA, Viral (genetics), Swine (virology), Swine Diseases (epidemiology), Swine Diseases (virology), United States.
- MESH :
- chemical , genetics : RNA, Viral.
- geographic : Asia, Canada, China, Europe, Latin America, Mexico, North America, United States.
- epidemiology : Orthomyxoviridae Infections, Swine Diseases.
- genetics : Influenza A virus.
- veterinary : Orthomyxoviridae Infections.
- virology : Orthomyxoviridae Infections, Swine, Swine Diseases.
- Animals, Base Sequence, Commerce, Internationality, Molecular Epidemiology, Molecular Sequence Data.
Abstract
The complex and unresolved evolutionary origins of the 2009 H1N1 influenza pandemic exposed major gaps in our knowledge of the global spatial ecology and evolution of influenza A viruses in swine (swIAVs). Here we undertake an expansive phylogenetic analysis of swIAV sequence data and demonstrate that the global live swine trade strongly predicts the spatial dissemination of swIAVs, with Europe and North America acting as sources of viruses in Asian countries. In contrast, China has the world’s largest swine population but is not a major exporter of live swine, and is not an important source of swIAVs in neighboring Asian countries or globally. A meta-population simulation model incorporating trade data predicts that the global ecology of swIAVs is more complex than previously thought, and the US and China’s large swine populations are unlikely to be representative of swIAV diversity in their respective geographic regions, requiring independent surveillance efforts throughout Latin America and Asia.
Url:
DOI: 10.1038/ncomms7696
PubMed: 25813399
PubMed Central: 4380236
Affiliations:
- Australie, Belgique, Canada, Royaume-Uni, États-Unis
- Californie, Iowa, Maryland, Minnesota, Nouvelle-Galles du Sud, Écosse
- Sydney, Édimbourg
- Université d'Édimbourg, Université de Sydney
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PMC:4380236Le document en format XML
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Belgium</nlm:aff><country xml:lang="fr">Belgique</country><wicri:regionArea>Department of Microbiology and Immunology, Rega Institute, KU Leuven – University of Leuven, Leuven</wicri:regionArea><wicri:noRegion>Leuven</wicri:noRegion></affiliation></author></analytic><series><title level="j">Nature communications</title><idno type="eISSN">2041-1723</idno><imprint><date when="2015">2015</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Animals</term><term>Asia</term><term>Base Sequence</term><term>Canada</term><term>China</term><term>Commerce</term><term>Europe</term><term>Influenza A virus (genetics)</term><term>Internationality</term><term>Latin America</term><term>Mexico</term><term>Molecular Epidemiology</term><term>Molecular Sequence Data</term><term>North America</term><term>Orthomyxoviridae Infections (epidemiology)</term><term>Orthomyxoviridae Infections (veterinary)</term><term>Orthomyxoviridae Infections (virology)</term><term>RNA, Viral (genetics)</term><term>Swine (virology)</term><term>Swine Diseases (epidemiology)</term><term>Swine Diseases (virology)</term><term>United States</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>ARN viral (génétique)</term><term>Amérique du Nord</term><term>Amérique latine</term><term>Animaux</term><term>Asie</term><term>Canada</term><term>Chine</term><term>Commerce</term><term>Données de séquences moléculaires</term><term>Europe</term><term>Infections à Orthomyxoviridae (médecine vétérinaire)</term><term>Infections à Orthomyxoviridae (virologie)</term><term>Infections à Orthomyxoviridae (épidémiologie)</term><term>Internationalité</term><term>Maladies des porcs (virologie)</term><term>Maladies des porcs (épidémiologie)</term><term>Mexique</term><term>Suidae (virologie)</term><term>Séquence nucléotidique</term><term>Virus de la grippe A (génétique)</term><term>Épidémiologie moléculaire</term><term>États-Unis d'Amérique</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>RNA, Viral</term></keywords><keywords scheme="MESH" type="geographic" xml:lang="en"><term>Asia</term><term>Canada</term><term>China</term><term>Europe</term><term>Latin America</term><term>Mexico</term><term>North America</term><term>United States</term></keywords><keywords scheme="MESH" qualifier="epidemiology" xml:lang="en"><term>Orthomyxoviridae Infections</term><term>Swine Diseases</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Influenza A virus</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>ARN viral</term><term>Virus de la grippe A</term></keywords><keywords scheme="MESH" qualifier="médecine vétérinaire" xml:lang="fr"><term>Infections à Orthomyxoviridae</term></keywords><keywords scheme="MESH" qualifier="veterinary" xml:lang="en"><term>Orthomyxoviridae Infections</term></keywords><keywords scheme="MESH" qualifier="virologie" xml:lang="fr"><term>Infections à Orthomyxoviridae</term><term>Maladies des porcs</term><term>Suidae</term></keywords><keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Orthomyxoviridae Infections</term><term>Swine</term><term>Swine Diseases</term></keywords><keywords scheme="MESH" qualifier="épidémiologie" xml:lang="fr"><term>Infections à Orthomyxoviridae</term><term>Maladies des porcs</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Animals</term><term>Base Sequence</term><term>Commerce</term><term>Internationality</term><term>Molecular Epidemiology</term><term>Molecular Sequence Data</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Amérique du Nord</term><term>Amérique latine</term><term>Animaux</term><term>Asie</term><term>Canada</term><term>Chine</term><term>Commerce</term><term>Données de séquences moléculaires</term><term>Europe</term><term>Internationalité</term><term>Mexique</term><term>Séquence nucléotidique</term><term>Épidémiologie moléculaire</term><term>États-Unis d'Amérique</term></keywords><keywords scheme="Wicri" type="geographic" xml:lang="fr"><term>Canada</term><term>République populaire de Chine</term><term>Mexique</term><term>États-Unis</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p id="P1">The complex and unresolved evolutionary origins of the 2009 H1N1 influenza pandemic exposed major gaps in our knowledge of the global spatial ecology and evolution of influenza A viruses in swine (swIAVs). Here we undertake an expansive phylogenetic analysis of swIAV sequence data and demonstrate that the global live swine trade strongly predicts the spatial dissemination of swIAVs, with Europe and North America acting as sources of viruses in Asian countries. In contrast, China has the world’s largest swine population but is not a major exporter of live swine, and is not an important source of swIAVs in neighboring Asian countries or globally. A meta-population simulation model incorporating trade data predicts that the global ecology of swIAVs is more complex than previously thought, and the US and China’s large swine populations are unlikely to be representative of swIAV diversity in their respective geographic regions, requiring independent surveillance efforts throughout Latin America and Asia.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Garten, Rj" uniqKey="Garten R">RJ Garten</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Smith, Gjd" uniqKey="Smith G">GJD Smith</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Lemey, P" uniqKey="Lemey P">P Lemey</name></author><author><name sortKey="Suchard, M" uniqKey="Suchard M">M Suchard</name></author><author><name sortKey="Rambaut, A" uniqKey="Rambaut A">A Rambaut</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Koen, Js" uniqKey="Koen J">JS Koen</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Zhou, Nn" uniqKey="Zhou N">NN Zhou</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Karasin, A" uniqKey="Karasin A">A Karasin</name></author><author><name sortKey="Carman, S" uniqKey="Carman S">S Carman</name></author><author><name sortKey="Olsen, C" uniqKey="Olsen C">C Olsen</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Vincent, Al" uniqKey="Vincent A">AL Vincent</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Ottis, K" uniqKey="Ottis K">K Ottis</name></author><author><name sortKey="Sidoli, L" uniqKey="Sidoli L">L Sidoli</name></author><author><name sortKey="Bachmann, P" uniqKey="Bachmann P">P Bachmann</name></author><author><name sortKey="Webster, Rg" uniqKey="Webster R">RG Webster</name></author><author><name sortKey="Kaplan, Mm" uniqKey="Kaplan M">MM 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Viboud</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Romagosa, A" uniqKey="Romagosa A">A Romagosa</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Wong, Kk" uniqKey="Wong K">KK Wong</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Robinson, Tp" uniqKey="Robinson T">TP Robinson</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>Australie</li><li>Belgique</li><li>Canada</li><li>Royaume-Uni</li><li>États-Unis</li></country><region><li>Californie</li><li>Iowa</li><li>Maryland</li><li>Minnesota</li><li>Nouvelle-Galles du Sud</li><li>Écosse</li></region><settlement><li>Sydney</li><li>Édimbourg</li></settlement><orgName><li>Université d'Édimbourg</li><li>Université de Sydney</li></orgName></list><tree><noCountry><name sortKey="Wentworth, David E" sort="Wentworth, David E" uniqKey="Wentworth D" first="David E." last="Wentworth">David E. Wentworth</name></noCountry><country name="États-Unis"><region name="Maryland"><name sortKey="Nelson, Martha I" sort="Nelson, Martha I" uniqKey="Nelson M" first="Martha I." last="Nelson">Martha I. Nelson</name></region><name sortKey="Culhane, Marie R" sort="Culhane, Marie R" uniqKey="Culhane M" first="Marie R." last="Culhane">Marie R. Culhane</name><name sortKey="Rambaut, Andrew" sort="Rambaut, Andrew" uniqKey="Rambaut A" first="Andrew" last="Rambaut">Andrew Rambaut</name><name sortKey="Suchard, Marc A" sort="Suchard, Marc A" uniqKey="Suchard M" first="Marc A." last="Suchard">Marc A. Suchard</name><name sortKey="Viboud, Cecile" sort="Viboud, Cecile" uniqKey="Viboud C" first="Cécile" last="Viboud">Cécile Viboud</name><name sortKey="Vincent, Amy L" sort="Vincent, Amy L" uniqKey="Vincent A" first="Amy L." last="Vincent">Amy L. Vincent</name></country><country name="Canada"><noRegion><name sortKey="Detmer, Susan E" sort="Detmer, Susan E" uniqKey="Detmer S" first="Susan E." last="Detmer">Susan E. Detmer</name></noRegion></country><country name="Royaume-Uni"><region name="Écosse"><name sortKey="Rambaut, Andrew" sort="Rambaut, Andrew" uniqKey="Rambaut A" first="Andrew" last="Rambaut">Andrew Rambaut</name></region><name sortKey="Rambaut, Andrew" sort="Rambaut, Andrew" uniqKey="Rambaut A" first="Andrew" last="Rambaut">Andrew Rambaut</name></country><country name="Australie"><region name="Nouvelle-Galles du Sud"><name sortKey="Holmes, Edward C" sort="Holmes, Edward C" uniqKey="Holmes E" first="Edward C." last="Holmes">Edward C. Holmes</name></region></country><country name="Belgique"><noRegion><name sortKey="Lemey, Philippe" sort="Lemey, Philippe" uniqKey="Lemey P" first="Philippe" last="Lemey">Philippe Lemey</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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