Xrep, a plasmid-stimulating X chromosomal sequence bearing similarities to the BK virus replication origin and viral enhancers.
Identifieur interne : 002A79 ( PubMed/Corpus ); précédent : 002A78; suivant : 002A80Xrep, a plasmid-stimulating X chromosomal sequence bearing similarities to the BK virus replication origin and viral enhancers.
Auteurs : D E Riley ; R. Reeves ; S M GartlerSource :
- Nucleic acids research [ 0305-1048 ] ; 1986.
English descriptors
- KwdEn :
- Acetyltransferases (genetics), BK Virus (genetics), Base Sequence, Chloramphenicol O-Acetyltransferase, Chromosome Deletion, Chromosome Mapping, Cloning, Molecular, DNA, Viral (analysis), Enhancer Elements, Genetic, Escherichia coli (genetics), Genes, Regulator, Humans, Plasmids, Polyomavirus (genetics), Saccharomyces cerevisiae (genetics), Sequence Homology, Nucleic Acid, Virus Replication, X Chromosome.
- MESH :
- chemical , analysis : DNA, Viral.
- chemical , genetics : Acetyltransferases.
- genetics : BK Virus, Escherichia coli, Polyomavirus, Saccharomyces cerevisiae.
- Base Sequence, Chloramphenicol O-Acetyltransferase, Chromosome Deletion, Chromosome Mapping, Cloning, Molecular, Enhancer Elements, Genetic, Genes, Regulator, Humans, Plasmids, Sequence Homology, Nucleic Acid, Virus Replication, X Chromosome.
Abstract
The human X chromosome-linked fragment, "Xrep," was sequenced because it exerts a positive effect on plasmid growth in both E. coli and Saccharomyces cerevisiae. The sequence revealed three features similar to the human BK virus replication origin: Xrep has a true palindrome, CCTCC(T)3CCTCC, which is similar to "true" palindrome-like sequences found at the replication origins of polyoma [CCTC(T/C)10CTCC], BK [CCTC(A/G)8CCTCC] and SV40 [CCTCC(A)6GCCTCC] viruses. Twenty nucleotides away from the true palindrome, Xrep has the sequence GAATCCTATTCACTTTT while BK virus, the human analogue of SV40, has GAAATCCCTATTCTTTT in exactly the same position relative to the true palindrome. These two 17-mers differ only in the positions of two nucleotides comparing Xrep and BK virus. Also similar to the replication origins of DNA viruses, Xrep appears to have a cluster of enhancers adjacent to the origin-like sequences. Potent enhancer-like activity was detected in pSV1 X CAT/Xrep constructs. Xrep may originate from an endogenous virus, or from an X chromosomal replication origin.
DOI: 10.1093/nar/14.23.9407
PubMed: 3025813
Links to Exploration step
pubmed:3025813Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Xrep, a plasmid-stimulating X chromosomal sequence bearing similarities to the BK virus replication origin and viral enhancers.</title><author><name sortKey="Riley, D E" sort="Riley, D E" uniqKey="Riley D" first="D E" last="Riley">D E Riley</name></author><author><name sortKey="Reeves, R" sort="Reeves, R" uniqKey="Reeves R" first="R" last="Reeves">R. Reeves</name></author><author><name sortKey="Gartler, S M" sort="Gartler, S M" uniqKey="Gartler S" first="S M" last="Gartler">S M Gartler</name></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="1986">1986</date><idno type="RBID">pubmed:3025813</idno><idno type="pmid">3025813</idno><idno type="doi">10.1093/nar/14.23.9407</idno><idno type="wicri:Area/PubMed/Corpus">002A79</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Corpus" wicri:corpus="PubMed">002A79</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Xrep, a plasmid-stimulating X chromosomal sequence bearing similarities to the BK virus replication origin and viral enhancers.</title><author><name sortKey="Riley, D E" sort="Riley, D E" uniqKey="Riley D" first="D E" last="Riley">D E Riley</name></author><author><name sortKey="Reeves, R" sort="Reeves, R" uniqKey="Reeves R" first="R" last="Reeves">R. Reeves</name></author><author><name sortKey="Gartler, S M" sort="Gartler, S M" uniqKey="Gartler S" first="S M" last="Gartler">S M Gartler</name></author></analytic><series><title level="j">Nucleic acids research</title><idno type="ISSN">0305-1048</idno><imprint><date when="1986" type="published">1986</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Acetyltransferases (genetics)</term><term>BK Virus (genetics)</term><term>Base Sequence</term><term>Chloramphenicol O-Acetyltransferase</term><term>Chromosome Deletion</term><term>Chromosome Mapping</term><term>Cloning, Molecular</term><term>DNA, Viral (analysis)</term><term>Enhancer Elements, Genetic</term><term>Escherichia coli (genetics)</term><term>Genes, Regulator</term><term>Humans</term><term>Plasmids</term><term>Polyomavirus (genetics)</term><term>Saccharomyces cerevisiae (genetics)</term><term>Sequence Homology, Nucleic Acid</term><term>Virus Replication</term><term>X Chromosome</term></keywords><keywords scheme="MESH" type="chemical" qualifier="analysis" xml:lang="en"><term>DNA, Viral</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Acetyltransferases</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>BK Virus</term><term>Escherichia coli</term><term>Polyomavirus</term><term>Saccharomyces cerevisiae</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Base Sequence</term><term>Chloramphenicol O-Acetyltransferase</term><term>Chromosome Deletion</term><term>Chromosome Mapping</term><term>Cloning, Molecular</term><term>Enhancer Elements, Genetic</term><term>Genes, Regulator</term><term>Humans</term><term>Plasmids</term><term>Sequence Homology, Nucleic Acid</term><term>Virus Replication</term><term>X Chromosome</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">The human X chromosome-linked fragment, "Xrep," was sequenced because it exerts a positive effect on plasmid growth in both E. coli and Saccharomyces cerevisiae. The sequence revealed three features similar to the human BK virus replication origin: Xrep has a true palindrome, CCTCC(T)3CCTCC, which is similar to "true" palindrome-like sequences found at the replication origins of polyoma [CCTC(T/C)10CTCC], BK [CCTC(A/G)8CCTCC] and SV40 [CCTCC(A)6GCCTCC] viruses. Twenty nucleotides away from the true palindrome, Xrep has the sequence GAATCCTATTCACTTTT while BK virus, the human analogue of SV40, has GAAATCCCTATTCTTTT in exactly the same position relative to the true palindrome. These two 17-mers differ only in the positions of two nucleotides comparing Xrep and BK virus. Also similar to the replication origins of DNA viruses, Xrep appears to have a cluster of enhancers adjacent to the origin-like sequences. Potent enhancer-like activity was detected in pSV1 X CAT/Xrep constructs. Xrep may originate from an endogenous virus, or from an X chromosomal replication origin.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">3025813</PMID><DateCompleted><Year>1987</Year><Month>02</Month><Day>18</Day></DateCompleted><DateRevised><Year>2019</Year><Month>05</Month><Day>01</Day></DateRevised><Article PubModel="Print"><Journal><ISSN IssnType="Print">0305-1048</ISSN><JournalIssue CitedMedium="Print"><Volume>14</Volume><Issue>23</Issue><PubDate><Year>1986</Year><Month>Dec</Month><Day>09</Day></PubDate></JournalIssue><Title>Nucleic acids research</Title><ISOAbbreviation>Nucleic Acids Res.</ISOAbbreviation></Journal><ArticleTitle>Xrep, a plasmid-stimulating X chromosomal sequence bearing similarities to the BK virus replication origin and viral enhancers.</ArticleTitle><Pagination><MedlinePgn>9407-23</MedlinePgn></Pagination><Abstract><AbstractText>The human X chromosome-linked fragment, "Xrep," was sequenced because it exerts a positive effect on plasmid growth in both E. coli and Saccharomyces cerevisiae. The sequence revealed three features similar to the human BK virus replication origin: Xrep has a true palindrome, CCTCC(T)3CCTCC, which is similar to "true" palindrome-like sequences found at the replication origins of polyoma [CCTC(T/C)10CTCC], BK [CCTC(A/G)8CCTCC] and SV40 [CCTCC(A)6GCCTCC] viruses. Twenty nucleotides away from the true palindrome, Xrep has the sequence GAATCCTATTCACTTTT while BK virus, the human analogue of SV40, has GAAATCCCTATTCTTTT in exactly the same position relative to the true palindrome. These two 17-mers differ only in the positions of two nucleotides comparing Xrep and BK virus. Also similar to the replication origins of DNA viruses, Xrep appears to have a cluster of enhancers adjacent to the origin-like sequences. Potent enhancer-like activity was detected in pSV1 X CAT/Xrep constructs. Xrep may originate from an endogenous virus, or from an X chromosomal replication origin.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Riley</LastName><ForeName>D E</ForeName><Initials>DE</Initials></Author><Author ValidYN="Y"><LastName>Reeves</LastName><ForeName>R</ForeName><Initials>R</Initials></Author><Author ValidYN="Y"><LastName>Gartler</LastName><ForeName>S M</ForeName><Initials>SM</Initials></Author></AuthorList><Language>eng</Language><DataBankList CompleteYN="Y"><DataBank><DataBankName>GENBANK</DataBankName><AccessionNumberList><AccessionNumber>X04985</AccessionNumber></AccessionNumberList></DataBank></DataBankList><GrantList CompleteYN="Y"><Grant><GrantID>1RO1 HD16659</GrantID><Acronym>HD</Acronym><Agency>NICHD NIH HHS</Agency><Country>United States</Country></Grant></GrantList><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013486">Research Support, U.S. Gov't, Non-P.H.S.</PublicationType><PublicationType UI="D013487">Research Support, U.S. Gov't, P.H.S.</PublicationType></PublicationTypeList></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Nucleic Acids Res</MedlineTA><NlmUniqueID>0411011</NlmUniqueID><ISSNLinking>0305-1048</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004279">DNA, Viral</NameOfSubstance></Chemical><Chemical><RegistryNumber>EC 2.3.1.-</RegistryNumber><NameOfSubstance UI="D000123">Acetyltransferases</NameOfSubstance></Chemical><Chemical><RegistryNumber>EC 2.3.1.28</RegistryNumber><NameOfSubstance UI="D015500">Chloramphenicol O-Acetyltransferase</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D000123" MajorTopicYN="N">Acetyltransferases</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D001739" MajorTopicYN="N">BK Virus</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D001483" MajorTopicYN="N">Base Sequence</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D015500" MajorTopicYN="N">Chloramphenicol O-Acetyltransferase</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D002872" MajorTopicYN="N">Chromosome Deletion</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D002874" MajorTopicYN="N">Chromosome Mapping</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D003001" MajorTopicYN="N">Cloning, Molecular</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D004279" MajorTopicYN="N">DNA, Viral</DescriptorName><QualifierName UI="Q000032" MajorTopicYN="N">analysis</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D004742" MajorTopicYN="Y">Enhancer Elements, 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Acid</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D014779" MajorTopicYN="Y">Virus Replication</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D014960" MajorTopicYN="Y">X Chromosome</DescriptorName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="pubmed"><Year>1986</Year><Month>12</Month><Day>9</Day></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>1986</Year><Month>12</Month><Day>9</Day><Hour>0</Hour><Minute>1</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>1986</Year><Month>12</Month><Day>9</Day><Hour>0</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">3025813</ArticleId><ArticleId IdType="pmc">PMC311967</ArticleId><ArticleId IdType="doi">10.1093/nar/14.23.9407</ArticleId></ArticleIdList><ReferenceList><Reference><Citation>J Mol Biol. 1982 Apr 15;156(3):531-48</Citation><ArticleIdList><ArticleId 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