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Rational Drug Design of Peptide-Based Therapies for Sickle Cell Disease

Identifieur interne : 001390 ( Pmc/Curation ); précédent : 001389; suivant : 001391

Rational Drug Design of Peptide-Based Therapies for Sickle Cell Disease

Auteurs : Olujide O. Olubiyi [Nigeria] ; Maryam O. Olagunju ; Birgit Strodel [Allemagne]

Source :

RBID : PMC:6943517

Abstract

Sickle cell disease (SCD) is a group of inherited disorders affecting red blood cells, which is caused by a single mutation that results in substitution of the amino acid valine for glutamic acid in the sixth position of the β-globin chain of hemoglobin. These mutant hemoglobin molecules, called hemoglobin S, can polymerize upon deoxygenation, causing erythrocytes to adopt a sickled form and to suffer hemolysis and vaso-occlusion. Until recently, only two drug therapies for SCD, which do not even fully address the manifestations of SCD, were approved by the United States (US) Food and Drug Administration. A third treatment was newly approved, while a monoclonal antibody preventing vaso-occlusive crises is also now available. The complex nature of SCD manifestations provides multiple critical points where drug discovery efforts can be and have been directed. These notwithstanding, the need for new therapeutic approaches remains high and one of the recent efforts includes developments aimed at inhibiting the polymerization of hemoglobin S. This review focuses on anti-sickling approaches using peptide-based inhibitors, ranging from individual amino acid dipeptides investigated 30–40 years ago up to more promising 12- and 15-mers under consideration in recent years.


Url:
DOI: 10.3390/molecules24244551
PubMed: 31842406
PubMed Central: 6943517

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PMC:6943517

Le document en format XML

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<p>Sickle cell disease (SCD) is a group of inherited disorders affecting red blood cells, which is caused by a single mutation that results in substitution of the amino acid valine for glutamic acid in the sixth position of the β-globin chain of hemoglobin. These mutant hemoglobin molecules, called hemoglobin S, can polymerize upon deoxygenation, causing erythrocytes to adopt a sickled form and to suffer hemolysis and vaso-occlusion. Until recently, only two drug therapies for SCD, which do not even fully address the manifestations of SCD, were approved by the United States (US) Food and Drug Administration. A third treatment was newly approved, while a monoclonal antibody preventing vaso-occlusive crises is also now available. The complex nature of SCD manifestations provides multiple critical points where drug discovery efforts can be and have been directed. These notwithstanding, the need for new therapeutic approaches remains high and one of the recent efforts includes developments aimed at inhibiting the polymerization of hemoglobin S. This review focuses on anti-sickling approaches using peptide-based inhibitors, ranging from individual amino acid dipeptides investigated 30–40 years ago up to more promising 12- and 15-mers under consideration in recent years.</p>
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<pmc article-type="review-article">
<pmc-dir>properties open_access</pmc-dir>
<front>
<journal-meta>
<journal-id journal-id-type="nlm-ta">Molecules</journal-id>
<journal-id journal-id-type="iso-abbrev">Molecules</journal-id>
<journal-id journal-id-type="publisher-id">molecules</journal-id>
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<journal-title>Molecules</journal-title>
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<issn pub-type="epub">1420-3049</issn>
<publisher>
<publisher-name>MDPI</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="pmid">31842406</article-id>
<article-id pub-id-type="pmc">6943517</article-id>
<article-id pub-id-type="doi">10.3390/molecules24244551</article-id>
<article-id pub-id-type="publisher-id">molecules-24-04551</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Review</subject>
</subj-group>
</article-categories>
<title-group>
<article-title>Rational Drug Design of Peptide-Based Therapies for Sickle Cell Disease</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<contrib-id contrib-id-type="orcid" authenticated="true">https://orcid.org/0000-0002-9412-6776</contrib-id>
<name>
<surname>Olubiyi</surname>
<given-names>Olujide O.</given-names>
</name>
<xref ref-type="aff" rid="af1-molecules-24-04551">1</xref>
<xref ref-type="aff" rid="af2-molecules-24-04551">2</xref>
<xref rid="c1-molecules-24-04551" ref-type="corresp">*</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Olagunju</surname>
<given-names>Maryam O.</given-names>
</name>
<xref ref-type="aff" rid="af1-molecules-24-04551">1</xref>
</contrib>
<contrib contrib-type="author">
<contrib-id contrib-id-type="orcid" authenticated="true">https://orcid.org/0000-0002-8734-7765</contrib-id>
<name>
<surname>Strodel</surname>
<given-names>Birgit</given-names>
</name>
<xref ref-type="aff" rid="af1-molecules-24-04551">1</xref>
<xref ref-type="aff" rid="af3-molecules-24-04551">3</xref>
</contrib>
</contrib-group>
<contrib-group>
<contrib contrib-type="editor">
<name>
<surname>Riedl</surname>
<given-names>Rainer</given-names>
</name>
<role>Academic Editor</role>
</contrib>
</contrib-group>
<aff id="af1-molecules-24-04551">
<label>1</label>
Institute of Complex Systems: Structural Biochemistry, Forschungszentrum Jülich, 52425 Jülich, Germany;
<email>m.olagunju@fz-juelich.de</email>
(M.O.O.);
<email>b.strodel@fz-juelich.de</email>
(B.S.)</aff>
<aff id="af2-molecules-24-04551">
<label>2</label>
Department of Pharmaceutical Chemistry, Faculty of Pharmacy, Obafemi Awolowo University, Ile-Ife 220282, Nigeria</aff>
<aff id="af3-molecules-24-04551">
<label>3</label>
Institute of Theoretical and Computational Chemistry, Heinrich Heine University Düsseldorf, Universitätsstraße 1, 40225 Düsseldorf, Germany</aff>
<author-notes>
<corresp id="c1-molecules-24-04551">
<label>*</label>
Correspondence:
<email>olubiyioo@oauife.edu.ng</email>
</corresp>
</author-notes>
<pub-date pub-type="epub">
<day>12</day>
<month>12</month>
<year>2019</year>
</pub-date>
<pub-date pub-type="collection">
<month>12</month>
<year>2019</year>
</pub-date>
<volume>24</volume>
<issue>24</issue>
<elocation-id>4551</elocation-id>
<history>
<date date-type="received">
<day>30</day>
<month>9</month>
<year>2019</year>
</date>
<date date-type="accepted">
<day>09</day>
<month>12</month>
<year>2019</year>
</date>
</history>
<permissions>
<copyright-statement>© 2019 by the authors.</copyright-statement>
<copyright-year>2019</copyright-year>
<license license-type="open-access">
<license-p>Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (
<ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by/4.0/">http://creativecommons.org/licenses/by/4.0/</ext-link>
).</license-p>
</license>
</permissions>
<abstract>
<p>Sickle cell disease (SCD) is a group of inherited disorders affecting red blood cells, which is caused by a single mutation that results in substitution of the amino acid valine for glutamic acid in the sixth position of the β-globin chain of hemoglobin. These mutant hemoglobin molecules, called hemoglobin S, can polymerize upon deoxygenation, causing erythrocytes to adopt a sickled form and to suffer hemolysis and vaso-occlusion. Until recently, only two drug therapies for SCD, which do not even fully address the manifestations of SCD, were approved by the United States (US) Food and Drug Administration. A third treatment was newly approved, while a monoclonal antibody preventing vaso-occlusive crises is also now available. The complex nature of SCD manifestations provides multiple critical points where drug discovery efforts can be and have been directed. These notwithstanding, the need for new therapeutic approaches remains high and one of the recent efforts includes developments aimed at inhibiting the polymerization of hemoglobin S. This review focuses on anti-sickling approaches using peptide-based inhibitors, ranging from individual amino acid dipeptides investigated 30–40 years ago up to more promising 12- and 15-mers under consideration in recent years.</p>
</abstract>
<kwd-group>
<kwd>hemoglobin</kwd>
<kwd>polymerization inhibitors</kwd>
<kwd>hemoglobin modifiers</kwd>
<kwd>sickle cell treatment</kwd>
</kwd-group>
</article-meta>
</front>
<floats-group>
<fig id="molecules-24-04551-f001" orientation="portrait" position="float">
<label>Figure 1</label>
<caption>
<p>(
<bold>A</bold>
) The quaternary structure of HbS consisting of two α subunits (here denoted α
<sub>1</sub>
and α
<sub>2</sub>
for ease of distinction, shown in shades of blue) and two β (β
<sub>1</sub>
and β
<sub>2</sub>
, shades of red) subunits. Each globin subunit carries one heme (green), including an Fe
<sup>2+</sup>
ion (orange). (
<bold>B</bold>
) The hemes are linked to the globin by covalent bonds between their irons and N
<sub>ε</sub>
of histidines His87 of the α chains and His92 of the β chains, known as the proximal histidines. On the other side of the hemes, the distal histidines are located, which are His58 in the α chains and His63 in the β chains. (
<bold>C</bold>
) The single mutation Glu6Val happens on the surface of the β chains near their N-terminus. The His and Val residues are shown as sticks and are colored by atom name (C: Yellow; N: Blue; O: Red). This figure was produced using PDB entry 5E6E [
<xref rid="B63-molecules-24-04551" ref-type="bibr">63</xref>
].</p>
</caption>
<graphic xlink:href="molecules-24-04551-g001"></graphic>
</fig>
<fig id="molecules-24-04551-f002" orientation="portrait" position="float">
<label>Figure 2</label>
<caption>
<p>Schematic representation of the main structural differences between the (
<bold>A</bold>
) R and (
<bold>B</bold>
) T conformations of hemoglobin.</p>
</caption>
<graphic xlink:href="molecules-24-04551-g002"></graphic>
</fig>
<fig id="molecules-24-04551-f003" orientation="portrait" position="float">
<label>Figure 3</label>
<caption>
<p>(
<bold>A</bold>
) Schematic representation of how the Glu6Val mutation modifies normal hemoglobin polymerization of HbS heterotetramers, involving linear Hb aggregates formed by both HbA and HbS (left) into double HbS filaments (right). The hemoglobin tetramer is represented as a circle, such that one quarter corresponds to one protein subunit using the same coloring as in
<xref ref-type="fig" rid="molecules-24-04551-f001">Figure 1</xref>
. The βGlu6Val mutation is indicated as a protrusion from the circle in the β2 subunit and the hydrophobic pocket as a nick in the neighboring
<inline-formula>
<mml:math id="mm1">
<mml:mrow>
<mml:msubsup>
<mml:mi mathvariant="sans-serif">β</mml:mi>
<mml:mn>1</mml:mn>
<mml:mo></mml:mo>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula>
subunit. Seven double filaments aggregate further to form fibers (bottom, reproduced with permission from reference [
<xref rid="B83-molecules-24-04551" ref-type="bibr">83</xref>
]). (
<bold>B</bold>
) A dimer formed by two HbS aggregates is shown. (
<bold>C</bold>
) This aggregation is mediated by β
<sub>2</sub>
Val6 interacting with the hydrophobic pocket formed by
<inline-formula>
<mml:math id="mm2">
<mml:mrow>
<mml:msubsup>
<mml:mi mathvariant="sans-serif">β</mml:mi>
<mml:mn>1</mml:mn>
<mml:mo></mml:mo>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula>
Phe85 and
<inline-formula>
<mml:math id="mm3">
<mml:mrow>
<mml:msubsup>
<mml:mi mathvariant="sans-serif">β</mml:mi>
<mml:mn>1</mml:mn>
<mml:mo></mml:mo>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula>
Leu88. The side chains of these three residues are shown as yellow sticks and also transparent van der Waals surfaces to better indicate the space these residues occupy. Panels B and C were produced from PDB entry 2HBS [
<xref rid="B84-molecules-24-04551" ref-type="bibr">84</xref>
].</p>
</caption>
<graphic xlink:href="molecules-24-04551-g003"></graphic>
</fig>
<fig id="molecules-24-04551-f004" orientation="portrait" position="float">
<label>Figure 4</label>
<caption>
<p>Binding of 5-hydroxymethylfurfural (5-HMF; yellow/red) in the α-cleft of HbS via hydrogen bonds and hydrophobic interactions formed with both α-globins, stabilizing the R-state conformation. The coloring scheme from
<xref ref-type="fig" rid="molecules-24-04551-f001">Figure 1</xref>
is used for HbS. The figure was produced from PDB entry 5URC [
<xref rid="B98-molecules-24-04551" ref-type="bibr">98</xref>
].</p>
</caption>
<graphic xlink:href="molecules-24-04551-g004"></graphic>
</fig>
<fig id="molecules-24-04551-f005" orientation="portrait" position="float">
<label>Figure 5</label>
<caption>
<p>Computational models of the HbS interaction with compounds with antisickling activity from drug repurposing investigation in reference [
<xref rid="B111-molecules-24-04551" ref-type="bibr">111</xref>
]: (
<bold>A</bold>
) praziquantel, (
<bold>B</bold>
) losartan, (
<bold>C</bold>
) ketoprofen, (
<bold>D</bold>
) glipizide, (
<bold>E</bold>
) rosuvastatin, (
<bold>F</bold>
) atorvastatin, (
<bold>G</bold>
) ergotamine, (
<bold>H</bold>
) risperidone. The orange interactions are of hydrophobic nature, preferentially with aromatic HbS residues, while the red color in panel C indicates an electrostatic interaction. Green arrows show hydrogen bonds.</p>
</caption>
<graphic xlink:href="molecules-24-04551-g005"></graphic>
</fig>
<fig id="molecules-24-04551-f006" orientation="portrait" position="float">
<label>Figure 6</label>
<caption>
<p>Proline derivatives tested for HbS anti-polymerization efficacy: (
<bold>A</bold>
) (4S)-1-butyryl-4-[(carboxymethyl)amino]-
<sc>l</sc>
-proline and (
<bold>B</bold>
) (4S)-1-butyryl-4-[(carboxymethyl)methylamino]-
<sc>l</sc>
-proline-2-ester with salicylic acid and their 1-benzoyl analogues [
<xref rid="B135-molecules-24-04551" ref-type="bibr">135</xref>
]. (
<bold>C</bold>
) The anticipated binding site of these ligands is formed by βHis2, βThr4, and βLys132, which is thought to disturb the binding of βThr4 to β’Asp73 and of βVal6 to β’Phe85/β’Leu88. The salicylate group in (
<bold>B</bold>
) is expected to covalently bind to βLys132.</p>
</caption>
<graphic xlink:href="molecules-24-04551-g006"></graphic>
</fig>
<fig id="molecules-24-04551-f007" orientation="portrait" position="float">
<label>Figure 7</label>
<caption>
<p>Phenylalanine, tyrosine, and tryptophan derivatives and analogues with significant anti-polymerization properties. The enhancement of the anti-polymerization capacity with respect to phenylalanine is given in parentheses [
<xref rid="B139-molecules-24-04551" ref-type="bibr">139</xref>
].</p>
</caption>
<graphic xlink:href="molecules-24-04551-g007"></graphic>
</fig>
<fig id="molecules-24-04551-f008" orientation="portrait" position="float">
<label>Figure 8</label>
<caption>
<p>Succinyl-
<sc>l</sc>
-tryptophan-
<sc>l</sc>
-tryptophan (STT) increased the HbS solubility in a dose-dependent manner [
<xref rid="B79-molecules-24-04551" ref-type="bibr">79</xref>
].</p>
</caption>
<graphic xlink:href="molecules-24-04551-g008"></graphic>
</fig>
<fig id="molecules-24-04551-f009" orientation="portrait" position="float">
<label>Figure 9</label>
<caption>
<p>The structure of the highly potent 18-residue “mirror image” HbS polymerization inhibiting Peptide II featuring two Ac-MEELQDDYK units linked by a bis(sulfosuccinimidyl) suberate [
<xref rid="B142-molecules-24-04551" ref-type="bibr">142</xref>
].</p>
</caption>
<graphic xlink:href="molecules-24-04551-g009"></graphic>
</fig>
<table-wrap id="molecules-24-04551-t001" orientation="portrait" position="float">
<object-id pub-id-type="pii">molecules-24-04551-t001_Table 1</object-id>
<label>Table 1</label>
<caption>
<p>Short peptides with the best demonstrated inhibitory activity identified in [
<xref rid="B121-molecules-24-04551" ref-type="bibr">121</xref>
,
<xref rid="B122-molecules-24-04551" ref-type="bibr">122</xref>
], given as the minimal inhibitor mole ratio (MIMR) of peptide to HbS necessary to prevent HbS polymerization. The values are means ± standard error. “Suc” stands for succinyl: –OOC–(CH
<sub>2</sub>
)
<sub>2</sub>
–CO–.</p>
</caption>
<table frame="hsides" rules="groups">
<thead>
<tr>
<th align="center" valign="middle" style="border-top:solid thin;border-bottom:solid thin" rowspan="1" colspan="1">Peptide</th>
<th align="center" valign="middle" style="border-top:solid thin;border-bottom:solid thin" rowspan="1" colspan="1">MIMR</th>
</tr>
</thead>
<tbody>
<tr>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">Suc-(L-Phe)-(L-Phe)-(L-Phe)</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">9.5 ± 0.5</td>
</tr>
<tr>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">Suc-(L-Phe)-(L-Phe)-(L-Phe)-(L-Arg)</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">10.0 ± 1.0</td>
</tr>
<tr>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">Suc-(L-Trp)-(L-Trp)</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">10.0 ± 0.5</td>
</tr>
<tr>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">Suc-(L-Trp)-(L-Phe)</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">12.5 ± 0.5</td>
</tr>
</tbody>
</table>
</table-wrap>
</floats-group>
</pmc>
</record>

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