Middle East respiratory syndrome coronavirus (MERS-CoV) — Surveillance and testing in North England from 2012 to 2019
Identifieur interne : 000059 ( Pmc/Checkpoint ); précédent : 000058; suivant : 000060Middle East respiratory syndrome coronavirus (MERS-CoV) — Surveillance and testing in North England from 2012 to 2019
Auteurs : Hamzah Z. Farooq [Royaume-Uni] ; Emma Davies [Royaume-Uni] ; Shazaad Ahmad [Royaume-Uni] ; Nicholas Machin [Royaume-Uni] ; Louise Hesketh [Royaume-Uni] ; Malcolm Guiver [Royaume-Uni] ; Andrew J. Turner [Royaume-Uni]Source :
- International Journal of Infectious Diseases [ 1201-9712 ] ; 2020.
Abstract
MERS is an emerging infectious disease with high consequences. PHE Manchester receives a high number of MERS surveillance samples. Sputum samples are the optimum samples for diagnosing respiratory viruses. Multiple samples per patient result in a 100% diagnostic yield and a confirmed end-diagnosis.
Url:
DOI: 10.1016/j.ijid.2020.01.043
PubMed: 32004690
PubMed Central: 7129156
Affiliations:
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Farooq</name><affiliation wicri:level="3"><nlm:aff id="aff0005">Department of Virology, Manchester University NHS Foundation Trust, Manchester, United Kingdom</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Department of Virology, Manchester University NHS Foundation Trust, Manchester</wicri:regionArea><placeName><settlement type="city">Manchester</settlement><region type="country">Angleterre</region><region type="région" nuts="1">Grand Manchester</region></placeName></affiliation><affiliation wicri:level="3"><nlm:aff id="aff0010">Department of Infectious Diseases and Tropical Medicine, North Manchester General Hospital, Manchester, United Kingdom</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Department of Infectious Diseases and Tropical Medicine, North Manchester General Hospital, Manchester</wicri:regionArea><placeName><settlement type="city">Manchester</settlement><region type="country">Angleterre</region><region type="région" nuts="1">Grand Manchester</region></placeName></affiliation><affiliation wicri:level="3"><nlm:aff id="aff0015">Public Health Laboratory Manchester, Manchester, United Kingdom</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Public Health Laboratory Manchester, Manchester</wicri:regionArea><placeName><settlement type="city">Manchester</settlement><region type="country">Angleterre</region><region type="région" nuts="1">Grand Manchester</region></placeName></affiliation></author><author><name sortKey="Davies, Emma" sort="Davies, Emma" uniqKey="Davies E" first="Emma" last="Davies">Emma Davies</name><affiliation wicri:level="3"><nlm:aff id="aff0005">Department of Virology, Manchester University NHS Foundation Trust, Manchester, United Kingdom</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Department of Virology, Manchester University NHS Foundation Trust, Manchester</wicri:regionArea><placeName><settlement type="city">Manchester</settlement><region type="country">Angleterre</region><region type="région" nuts="1">Grand Manchester</region></placeName></affiliation><affiliation wicri:level="3"><nlm:aff id="aff0015">Public Health Laboratory Manchester, Manchester, United Kingdom</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Public Health Laboratory Manchester, Manchester</wicri:regionArea><placeName><settlement type="city">Manchester</settlement><region type="country">Angleterre</region><region type="région" nuts="1">Grand Manchester</region></placeName></affiliation></author><author><name sortKey="Ahmad, Shazaad" sort="Ahmad, Shazaad" uniqKey="Ahmad S" first="Shazaad" last="Ahmad">Shazaad Ahmad</name><affiliation wicri:level="3"><nlm:aff id="aff0005">Department of Virology, Manchester University NHS Foundation Trust, Manchester, United Kingdom</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Department of Virology, Manchester University NHS Foundation Trust, Manchester</wicri:regionArea><placeName><settlement type="city">Manchester</settlement><region type="country">Angleterre</region><region type="région" nuts="1">Grand Manchester</region></placeName></affiliation><affiliation wicri:level="3"><nlm:aff id="aff0010">Department of Infectious Diseases and Tropical Medicine, North Manchester General Hospital, Manchester, United Kingdom</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Department of Infectious Diseases and Tropical Medicine, North Manchester General Hospital, Manchester</wicri:regionArea><placeName><settlement type="city">Manchester</settlement><region type="country">Angleterre</region><region type="région" nuts="1">Grand Manchester</region></placeName></affiliation><affiliation wicri:level="3"><nlm:aff id="aff0015">Public Health Laboratory Manchester, Manchester, United Kingdom</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Public Health Laboratory Manchester, Manchester</wicri:regionArea><placeName><settlement type="city">Manchester</settlement><region type="country">Angleterre</region><region type="région" nuts="1">Grand Manchester</region></placeName></affiliation></author><author><name sortKey="Machin, Nicholas" sort="Machin, Nicholas" uniqKey="Machin N" first="Nicholas" last="Machin">Nicholas Machin</name><affiliation wicri:level="3"><nlm:aff id="aff0005">Department of Virology, Manchester University NHS Foundation Trust, Manchester, United Kingdom</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Department of Virology, Manchester University NHS Foundation Trust, Manchester</wicri:regionArea><placeName><settlement type="city">Manchester</settlement><region type="country">Angleterre</region><region type="région" nuts="1">Grand Manchester</region></placeName></affiliation><affiliation wicri:level="3"><nlm:aff id="aff0015">Public Health Laboratory Manchester, Manchester, United Kingdom</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Public Health Laboratory Manchester, Manchester</wicri:regionArea><placeName><settlement type="city">Manchester</settlement><region type="country">Angleterre</region><region type="région" nuts="1">Grand Manchester</region></placeName></affiliation><affiliation wicri:level="4"><nlm:aff id="aff0020">University of Manchester, Manchester, United Kingdom</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>University of Manchester, Manchester</wicri:regionArea><placeName><settlement type="city">Manchester</settlement><region type="country">Angleterre</region><region type="région" nuts="1">Grand Manchester</region></placeName><orgName type="university">Université de Manchester</orgName></affiliation></author><author><name sortKey="Hesketh, Louise" sort="Hesketh, Louise" uniqKey="Hesketh L" first="Louise" last="Hesketh">Louise Hesketh</name><affiliation wicri:level="3"><nlm:aff id="aff0005">Department of Virology, Manchester University NHS Foundation Trust, Manchester, United Kingdom</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Department of Virology, Manchester University NHS Foundation Trust, Manchester</wicri:regionArea><placeName><settlement type="city">Manchester</settlement><region type="country">Angleterre</region><region type="région" nuts="1">Grand Manchester</region></placeName></affiliation><affiliation wicri:level="3"><nlm:aff id="aff0015">Public Health Laboratory Manchester, Manchester, United Kingdom</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Public Health Laboratory Manchester, Manchester</wicri:regionArea><placeName><settlement type="city">Manchester</settlement><region type="country">Angleterre</region><region type="région" nuts="1">Grand Manchester</region></placeName></affiliation><affiliation wicri:level="4"><nlm:aff id="aff0020">University of Manchester, Manchester, United Kingdom</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>University of Manchester, Manchester</wicri:regionArea><placeName><settlement type="city">Manchester</settlement><region type="country">Angleterre</region><region type="région" nuts="1">Grand Manchester</region></placeName><orgName type="university">Université de Manchester</orgName></affiliation></author><author><name sortKey="Guiver, Malcolm" sort="Guiver, Malcolm" uniqKey="Guiver M" first="Malcolm" last="Guiver">Malcolm Guiver</name><affiliation wicri:level="3"><nlm:aff id="aff0005">Department of Virology, Manchester University NHS Foundation Trust, Manchester, United Kingdom</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Department of Virology, Manchester University NHS Foundation Trust, Manchester</wicri:regionArea><placeName><settlement type="city">Manchester</settlement><region type="country">Angleterre</region><region type="région" nuts="1">Grand Manchester</region></placeName></affiliation><affiliation wicri:level="3"><nlm:aff id="aff0015">Public Health Laboratory Manchester, Manchester, United Kingdom</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Public Health Laboratory Manchester, Manchester</wicri:regionArea><placeName><settlement type="city">Manchester</settlement><region type="country">Angleterre</region><region type="région" nuts="1">Grand Manchester</region></placeName></affiliation><affiliation wicri:level="4"><nlm:aff id="aff0020">University of Manchester, Manchester, United Kingdom</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>University of Manchester, Manchester</wicri:regionArea><placeName><settlement type="city">Manchester</settlement><region type="country">Angleterre</region><region type="région" nuts="1">Grand Manchester</region></placeName><orgName type="university">Université de Manchester</orgName></affiliation></author><author><name sortKey="Turner, Andrew J" sort="Turner, Andrew J" uniqKey="Turner A" first="Andrew J." last="Turner">Andrew J. Turner</name><affiliation wicri:level="3"><nlm:aff id="aff0005">Department of Virology, Manchester University NHS Foundation Trust, Manchester, United Kingdom</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Department of Virology, Manchester University NHS Foundation Trust, Manchester</wicri:regionArea><placeName><settlement type="city">Manchester</settlement><region type="country">Angleterre</region><region type="région" nuts="1">Grand Manchester</region></placeName></affiliation><affiliation wicri:level="3"><nlm:aff id="aff0015">Public Health Laboratory Manchester, Manchester, United Kingdom</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Public Health Laboratory Manchester, Manchester</wicri:regionArea><placeName><settlement type="city">Manchester</settlement><region type="country">Angleterre</region><region type="région" nuts="1">Grand Manchester</region></placeName></affiliation><affiliation wicri:level="4"><nlm:aff id="aff0020">University of Manchester, Manchester, United Kingdom</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>University of Manchester, Manchester</wicri:regionArea><placeName><settlement type="city">Manchester</settlement><region type="country">Angleterre</region><region type="région" nuts="1">Grand Manchester</region></placeName><orgName type="university">Université de Manchester</orgName></affiliation></author></analytic><series><title level="j">International Journal of Infectious Diseases</title><idno type="ISSN">1201-9712</idno><idno type="eISSN">1878-3511</idno><imprint><date when="2020">2020</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><title>Highlights</title><p><list list-type="simple" id="lis0005"><list-item id="lsti0005"><label>•</label><p id="par0005">MERS is an emerging infectious disease with high consequences.</p></list-item><list-item id="lsti0010"><label>•</label><p id="par0010">PHE Manchester receives a high number of MERS surveillance samples.</p></list-item><list-item id="lsti0015"><label>•</label><p id="par0015">Sputum samples are the optimum samples for diagnosing respiratory viruses.</p></list-item><list-item id="lsti0020"><label>•</label><p id="par0020">Multiple samples per patient result in a 100% diagnostic yield and a confirmed end-diagnosis.</p></list-item></list></p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Annan, A" uniqKey="Annan A">A. 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<front><journal-meta><journal-id journal-id-type="nlm-ta">Int J Infect Dis</journal-id><journal-id journal-id-type="iso-abbrev">Int. J. Infect. Dis</journal-id><journal-title-group><journal-title>International Journal of Infectious Diseases</journal-title></journal-title-group><issn pub-type="ppub">1201-9712</issn><issn pub-type="epub">1878-3511</issn><publisher><publisher-name>The Authors. Published by Elsevier Ltd on behalf of International Society for Infectious Diseases.</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="pmid">32004690</article-id><article-id pub-id-type="pmc">7129156</article-id><article-id pub-id-type="publisher-id">S1201-9712(20)30046-1</article-id><article-id pub-id-type="doi">10.1016/j.ijid.2020.01.043</article-id><article-categories><subj-group subj-group-type="heading"><subject>Article</subject></subj-group></article-categories><title-group><article-title>Middle East respiratory syndrome coronavirus (MERS-CoV) — Surveillance and testing in North England from 2012 to 2019</article-title></title-group><contrib-group><contrib contrib-type="author" id="aut0005"><name><surname>Farooq</surname><given-names>Hamzah Z.</given-names></name><email>H.farooq@nhs.net</email><xref rid="aff0005" ref-type="aff">a</xref><xref rid="aff0010" ref-type="aff">b</xref><xref rid="aff0015" ref-type="aff">c</xref><xref rid="cor0005" ref-type="corresp">⁎</xref></contrib><contrib contrib-type="author" id="aut0010"><name><surname>Davies</surname><given-names>Emma</given-names></name><xref rid="aff0005" ref-type="aff">a</xref><xref rid="aff0015" ref-type="aff">c</xref></contrib><contrib contrib-type="author" id="aut0015"><name><surname>Ahmad</surname><given-names>Shazaad</given-names></name><xref rid="aff0005" ref-type="aff">a</xref><xref rid="aff0010" ref-type="aff">b</xref><xref rid="aff0015" ref-type="aff">c</xref></contrib><contrib contrib-type="author" id="aut0020"><name><surname>Machin</surname><given-names>Nicholas</given-names></name><xref rid="aff0005" ref-type="aff">a</xref><xref rid="aff0015" ref-type="aff">c</xref><xref rid="aff0020" ref-type="aff">d</xref></contrib><contrib contrib-type="author" id="aut0025"><name><surname>Hesketh</surname><given-names>Louise</given-names></name><xref rid="aff0005" ref-type="aff">a</xref><xref rid="aff0015" ref-type="aff">c</xref><xref rid="aff0020" ref-type="aff">d</xref></contrib><contrib contrib-type="author" id="aut0030"><name><surname>Guiver</surname><given-names>Malcolm</given-names></name><xref rid="aff0005" ref-type="aff">a</xref><xref rid="aff0015" ref-type="aff">c</xref><xref rid="aff0020" ref-type="aff">d</xref></contrib><contrib contrib-type="author" id="aut0035"><name><surname>Turner</surname><given-names>Andrew J.</given-names></name><xref rid="aff0005" ref-type="aff">a</xref><xref rid="aff0015" ref-type="aff">c</xref><xref rid="aff0020" ref-type="aff">d</xref></contrib></contrib-group><aff id="aff0005"><label>a</label>Department of Virology, Manchester University NHS Foundation Trust, Manchester, United Kingdom</aff><aff id="aff0010"><label>b</label>Department of Infectious Diseases and Tropical Medicine, North Manchester General Hospital, Manchester, United Kingdom</aff><aff id="aff0015"><label>c</label>Public Health Laboratory Manchester, Manchester, United Kingdom</aff><aff id="aff0020"><label>d</label>University of Manchester, Manchester, United Kingdom</aff><author-notes><corresp id="cor0005"><label>⁎</label>Corresponding author at: Department of Virology, Manchester Royal Infirmary, Manchester University NHS Foundation Trust, Oxford Road, Manchester, M13 9WL, United Kingdom. <email>H.farooq@nhs.net</email></corresp></author-notes><pub-date pub-type="pmc-release"><day>28</day><month>1</month><year>2020</year></pub-date><pmc-comment> PMC Release delay is 0 months and 0 days and was based on .</pmc-comment>
<pub-date pub-type="ppub"><month>4</month><year>2020</year></pub-date><pub-date pub-type="epub"><day>28</day><month>1</month><year>2020</year></pub-date><volume>93</volume><fpage>237</fpage><lpage>244</lpage><history><date date-type="received"><day>17</day><month>10</month><year>2019</year></date><date date-type="rev-recd"><day>22</day><month>1</month><year>2020</year></date><date date-type="accepted"><day>22</day><month>1</month><year>2020</year></date></history><permissions><copyright-statement>© 2020 The Authors</copyright-statement><copyright-year>2020</copyright-year><license><license-p>Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.</license-p></license></permissions><abstract abstract-type="author-highlights" id="abs0005"><title>Highlights</title><p><list list-type="simple" id="lis0005"><list-item id="lsti0005"><label>•</label><p id="par0005">MERS is an emerging infectious disease with high consequences.</p></list-item><list-item id="lsti0010"><label>•</label><p id="par0010">PHE Manchester receives a high number of MERS surveillance samples.</p></list-item><list-item id="lsti0015"><label>•</label><p id="par0015">Sputum samples are the optimum samples for diagnosing respiratory viruses.</p></list-item><list-item id="lsti0020"><label>•</label><p id="par0020">Multiple samples per patient result in a 100% diagnostic yield and a confirmed end-diagnosis.</p></list-item></list></p></abstract><abstract id="abs0010"><sec><title>Background</title><p>Middle East respiratory syndrome coronavirus (MERS-CoV) emerged in Saudi Arabia in 2012 and caused an epidemic in the Middle East. Public Health England (PHE) Manchester is one of the two PHE centres in the UK that perform testing for MERS-CoV. The results of the PHE Manchester MERS surveillance from 2012 to 2019 are presented in this report.</p></sec><sec><title>Methods</title><p>Retrospective data were collected for returning travellers from the Middle East fitting the PHE MERS case definition. Respiratory samples were tested for respiratory viruses and MERS-CoV using an in-house RT-PCR assay.</p></sec><sec><title>Results</title><p>Four hundred and twenty-six (426) samples from 264 patients were tested for MERS Co-V and respiratory viruses. No MERS-CoV infections were identified by PCR. Fifty-six percent of samples were PCR positive for viral or bacterial pathogen with Influenza A as the predominant virus (44%). Sixty-two percent of all patients had a pathogen identified with the highest positivity from sputum samples. Patients with multiple samples demonstrated a 100% diagnostic yield.</p></sec><sec><title>Conclusions</title><p>Although no cases of MERS were identified, the majority of patients had Influenza infection for which oseltamivir treatment was indicated and isolation warranted. Sputum samples were the most useful in diagnosing respiratory viruses with a 100% diagnostic yield from patients with multiple samples.</p></sec></abstract><kwd-group id="kwd0005"><title>Keywords</title><kwd>Middle East respiratory syndrome coronavirus</kwd><kwd>MERS</kwd><kwd>MERS-CoV</kwd><kwd>High consequence infectious disease</kwd><kwd>HCID</kwd><kwd>Emerging infectious disease</kwd><kwd>EID</kwd><kwd>Public health epidemiological surveillance</kwd></kwd-group></article-meta></front></pmc><affiliations><list><country><li>Royaume-Uni</li></country><region><li>Angleterre</li><li>Grand Manchester</li></region><settlement><li>Manchester</li></settlement><orgName><li>Université de Manchester</li></orgName></list><tree><country name="Royaume-Uni"><region name="Angleterre"><name sortKey="Farooq, Hamzah Z" sort="Farooq, Hamzah Z" uniqKey="Farooq H" first="Hamzah Z." last="Farooq">Hamzah Z. Farooq</name></region><name sortKey="Ahmad, Shazaad" sort="Ahmad, Shazaad" uniqKey="Ahmad S" first="Shazaad" last="Ahmad">Shazaad Ahmad</name><name sortKey="Ahmad, Shazaad" sort="Ahmad, Shazaad" uniqKey="Ahmad S" first="Shazaad" last="Ahmad">Shazaad Ahmad</name><name sortKey="Ahmad, Shazaad" sort="Ahmad, Shazaad" uniqKey="Ahmad S" first="Shazaad" last="Ahmad">Shazaad Ahmad</name><name sortKey="Davies, Emma" sort="Davies, Emma" uniqKey="Davies E" first="Emma" last="Davies">Emma Davies</name><name sortKey="Davies, Emma" sort="Davies, Emma" uniqKey="Davies E" first="Emma" last="Davies">Emma Davies</name><name sortKey="Farooq, Hamzah Z" sort="Farooq, Hamzah Z" uniqKey="Farooq H" first="Hamzah Z." last="Farooq">Hamzah Z. Farooq</name><name sortKey="Farooq, Hamzah Z" sort="Farooq, Hamzah Z" uniqKey="Farooq H" first="Hamzah Z." last="Farooq">Hamzah Z. Farooq</name><name sortKey="Guiver, Malcolm" sort="Guiver, Malcolm" uniqKey="Guiver M" first="Malcolm" last="Guiver">Malcolm Guiver</name><name sortKey="Guiver, Malcolm" sort="Guiver, Malcolm" uniqKey="Guiver M" first="Malcolm" last="Guiver">Malcolm Guiver</name><name sortKey="Guiver, Malcolm" sort="Guiver, Malcolm" uniqKey="Guiver M" first="Malcolm" last="Guiver">Malcolm Guiver</name><name sortKey="Hesketh, Louise" sort="Hesketh, Louise" uniqKey="Hesketh L" first="Louise" last="Hesketh">Louise Hesketh</name><name sortKey="Hesketh, Louise" sort="Hesketh, Louise" uniqKey="Hesketh L" first="Louise" last="Hesketh">Louise Hesketh</name><name sortKey="Hesketh, Louise" sort="Hesketh, Louise" uniqKey="Hesketh L" first="Louise" last="Hesketh">Louise Hesketh</name><name sortKey="Machin, Nicholas" sort="Machin, Nicholas" uniqKey="Machin N" first="Nicholas" last="Machin">Nicholas Machin</name><name sortKey="Machin, Nicholas" sort="Machin, Nicholas" uniqKey="Machin N" first="Nicholas" last="Machin">Nicholas Machin</name><name sortKey="Machin, Nicholas" sort="Machin, Nicholas" uniqKey="Machin N" first="Nicholas" last="Machin">Nicholas Machin</name><name sortKey="Turner, Andrew J" sort="Turner, Andrew J" uniqKey="Turner A" first="Andrew J." last="Turner">Andrew J. Turner</name><name sortKey="Turner, Andrew J" sort="Turner, Andrew J" uniqKey="Turner A" first="Andrew J." last="Turner">Andrew J. Turner</name><name sortKey="Turner, Andrew J" sort="Turner, Andrew J" uniqKey="Turner A" first="Andrew J." last="Turner">Andrew J. Turner</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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