The structure and functions of coronavirus genomic 3′ and 5′ ends
Identifieur interne : 001059 ( Ncbi/Merge ); précédent : 001058; suivant : 001060The structure and functions of coronavirus genomic 3′ and 5′ ends
Auteurs : Dong Yang [États-Unis] ; Julian L. Leibowitz [États-Unis]Source :
- Virus Research [ 0168-1702 ] ; 2015.
Descripteurs français
- KwdFr :
- ARN viral (), ARN viral (génétique), ARN viral (métabolisme), Animaux, Conformation d'acide nucléique, Coronavirus (génétique), Coronavirus (physiologie), Génome viral, Humains, Interactions hôte-pathogène, Modèles biologiques, Protéines de liaison à l'ARN (métabolisme), Régions 3' non traduites, Régions 5' non traduites, Régions promotrices (génétique), Réplication virale, Séquence conservée, Transcription génétique.
- MESH :
- génétique : ARN viral, Coronavirus.
- métabolisme : ARN viral, Protéines de liaison à l'ARN.
- physiologie : Coronavirus.
- ARN viral, Animaux, Conformation d'acide nucléique, Génome viral, Humains, Interactions hôte-pathogène, Modèles biologiques, Régions 3' non traduites, Régions 5' non traduites, Régions promotrices (génétique), Réplication virale, Séquence conservée, Transcription génétique.
English descriptors
- KwdEn :
- 3' Untranslated Regions, 5' Untranslated Regions, Animals, Conserved Sequence, Coronavirus (genetics), Coronavirus (physiology), Genome, Viral, Host-Pathogen Interactions, Humans, Models, Biological, Nucleic Acid Conformation, Promoter Regions, Genetic, RNA, Viral (chemistry), RNA, Viral (genetics), RNA, Viral (metabolism), RNA-Binding Proteins (metabolism), Transcription, Genetic, Virus Replication.
- MESH :
- chemical , chemistry : RNA, Viral.
- chemical , genetics : RNA, Viral.
- chemical , metabolism : RNA, Viral, RNA-Binding Proteins.
- chemical : 3' Untranslated Regions, 5' Untranslated Regions.
- genetics : Coronavirus.
- physiology : Coronavirus.
- Animals, Conserved Sequence, Genome, Viral, Host-Pathogen Interactions, Humans, Models, Biological, Nucleic Acid Conformation, Promoter Regions, Genetic, Transcription, Genetic, Virus Replication.
Abstract
Models of conserved 5′ and 3′ betacoronavirus The 5′ All 3′ A putative molecular switch is present in the coronavirus 3′UTR. Proteins interacting with these
Url:
DOI: 10.1016/j.virusres.2015.02.025
PubMed: 25736566
PubMed Central: 4476908
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Links to Exploration step
PMC:4476908Le document en format XML
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<sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">The structure and functions of coronavirus genomic 3′ and 5′ ends</title>
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<affiliation wicri:level="2"><nlm:aff id="aff0005">Department of Microbiology, Immunology & Biochemistry, The University of Tennessee Health Science Center College of Medicine, Memphis, TN 38163, USA</nlm:aff>
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<wicri:regionArea>Department of Microbiology, Immunology & Biochemistry, The University of Tennessee Health Science Center College of Medicine, Memphis, TN 38163</wicri:regionArea>
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<series><title level="j">Virus Research</title>
<idno type="ISSN">0168-1702</idno>
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<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>3' Untranslated Regions</term>
<term>5' Untranslated Regions</term>
<term>Animals</term>
<term>Conserved Sequence</term>
<term>Coronavirus (genetics)</term>
<term>Coronavirus (physiology)</term>
<term>Genome, Viral</term>
<term>Host-Pathogen Interactions</term>
<term>Humans</term>
<term>Models, Biological</term>
<term>Nucleic Acid Conformation</term>
<term>Promoter Regions, Genetic</term>
<term>RNA, Viral (chemistry)</term>
<term>RNA, Viral (genetics)</term>
<term>RNA, Viral (metabolism)</term>
<term>RNA-Binding Proteins (metabolism)</term>
<term>Transcription, Genetic</term>
<term>Virus Replication</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr"><term>ARN viral ()</term>
<term>ARN viral (génétique)</term>
<term>ARN viral (métabolisme)</term>
<term>Animaux</term>
<term>Conformation d'acide nucléique</term>
<term>Coronavirus (génétique)</term>
<term>Coronavirus (physiologie)</term>
<term>Génome viral</term>
<term>Humains</term>
<term>Interactions hôte-pathogène</term>
<term>Modèles biologiques</term>
<term>Protéines de liaison à l'ARN (métabolisme)</term>
<term>Régions 3' non traduites</term>
<term>Régions 5' non traduites</term>
<term>Régions promotrices (génétique)</term>
<term>Réplication virale</term>
<term>Séquence conservée</term>
<term>Transcription génétique</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en"><term>RNA, Viral</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>RNA, Viral</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>RNA, Viral</term>
<term>RNA-Binding Proteins</term>
</keywords>
<keywords scheme="MESH" type="chemical" xml:lang="en"><term>3' Untranslated Regions</term>
<term>5' Untranslated Regions</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Coronavirus</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>ARN viral</term>
<term>Coronavirus</term>
</keywords>
<keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>ARN viral</term>
<term>Protéines de liaison à l'ARN</term>
</keywords>
<keywords scheme="MESH" qualifier="physiologie" xml:lang="fr"><term>Coronavirus</term>
</keywords>
<keywords scheme="MESH" qualifier="physiology" xml:lang="en"><term>Coronavirus</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Animals</term>
<term>Conserved Sequence</term>
<term>Genome, Viral</term>
<term>Host-Pathogen Interactions</term>
<term>Humans</term>
<term>Models, Biological</term>
<term>Nucleic Acid Conformation</term>
<term>Promoter Regions, Genetic</term>
<term>Transcription, Genetic</term>
<term>Virus Replication</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr"><term>ARN viral</term>
<term>Animaux</term>
<term>Conformation d'acide nucléique</term>
<term>Génome viral</term>
<term>Humains</term>
<term>Interactions hôte-pathogène</term>
<term>Modèles biologiques</term>
<term>Régions 3' non traduites</term>
<term>Régions 5' non traduites</term>
<term>Régions promotrices (génétique)</term>
<term>Réplication virale</term>
<term>Séquence conservée</term>
<term>Transcription génétique</term>
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<front><div type="abstract" xml:lang="en"><title>Highlights</title>
<p><list list-type="simple" id="lis0005"><list-item id="lsti0005"><label>•</label>
<p id="par0005">Models of conserved 5′ and 3′ betacoronavirus <italic>cis</italic>
-acting RNA secondary structures are presented.</p>
</list-item>
<list-item id="lsti0010"><label>•</label>
<p id="par0010">The 5′ <italic>cis</italic>
-acting sequences required for coronavirus replication extend into the first open reading frame.</p>
</list-item>
<list-item id="lsti0015"><label>•</label>
<p id="par0015">All 3′ <italic>cis</italic>
-acting sequences required for coronavirus replication are contained in the 3′UTR.</p>
</list-item>
<list-item id="lsti0020"><label>•</label>
<p id="par0020">A putative molecular switch is present in the coronavirus 3′UTR.</p>
</list-item>
<list-item id="lsti0025"><label>•</label>
<p id="par0025">Proteins interacting with these <italic>cis</italic>
-acting regions are reviewed.</p>
</list-item>
</list>
</p>
</div>
</front>
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</back>
</TEI>
<double pmid="25736566"><pmc><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">The structure and functions of coronavirus genomic 3′ and 5′ ends</title>
<author><name sortKey="Yang, Dong" sort="Yang, Dong" uniqKey="Yang D" first="Dong" last="Yang">Dong Yang</name>
<affiliation wicri:level="2"><nlm:aff id="aff0005">Department of Microbiology, Immunology & Biochemistry, The University of Tennessee Health Science Center College of Medicine, Memphis, TN 38163, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Microbiology, Immunology & Biochemistry, The University of Tennessee Health Science Center College of Medicine, Memphis, TN 38163</wicri:regionArea>
<placeName><region type="state">Tennessee</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Leibowitz, Julian L" sort="Leibowitz, Julian L" uniqKey="Leibowitz J" first="Julian L." last="Leibowitz">Julian L. Leibowitz</name>
<affiliation wicri:level="2"><nlm:aff id="aff0010">Department of Microbial Pathogenesis and Immunology, Texas A&M University, College of Medicine, College Station, TX 77843-1114, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Microbial Pathogenesis and Immunology, Texas A&M University, College of Medicine, College Station, TX 77843-1114</wicri:regionArea>
<placeName><region type="state">Texas</region>
</placeName>
</affiliation>
</author>
</titleStmt>
<publicationStmt><idno type="wicri:source">PMC</idno>
<idno type="pmid">25736566</idno>
<idno type="pmc">4476908</idno>
<idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4476908</idno>
<idno type="RBID">PMC:4476908</idno>
<idno type="doi">10.1016/j.virusres.2015.02.025</idno>
<date when="2015">2015</date>
<idno type="wicri:Area/Pmc/Corpus">001430</idno>
<idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Corpus" wicri:corpus="PMC">001430</idno>
<idno type="wicri:Area/Pmc/Curation">001430</idno>
<idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Curation">001430</idno>
<idno type="wicri:Area/Pmc/Checkpoint">000D03</idno>
<idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Checkpoint">000D03</idno>
</publicationStmt>
<sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">The structure and functions of coronavirus genomic 3′ and 5′ ends</title>
<author><name sortKey="Yang, Dong" sort="Yang, Dong" uniqKey="Yang D" first="Dong" last="Yang">Dong Yang</name>
<affiliation wicri:level="2"><nlm:aff id="aff0005">Department of Microbiology, Immunology & Biochemistry, The University of Tennessee Health Science Center College of Medicine, Memphis, TN 38163, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Microbiology, Immunology & Biochemistry, The University of Tennessee Health Science Center College of Medicine, Memphis, TN 38163</wicri:regionArea>
<placeName><region type="state">Tennessee</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Leibowitz, Julian L" sort="Leibowitz, Julian L" uniqKey="Leibowitz J" first="Julian L." last="Leibowitz">Julian L. Leibowitz</name>
<affiliation wicri:level="2"><nlm:aff id="aff0010">Department of Microbial Pathogenesis and Immunology, Texas A&M University, College of Medicine, College Station, TX 77843-1114, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Microbial Pathogenesis and Immunology, Texas A&M University, College of Medicine, College Station, TX 77843-1114</wicri:regionArea>
<placeName><region type="state">Texas</region>
</placeName>
</affiliation>
</author>
</analytic>
<series><title level="j">Virus Research</title>
<idno type="ISSN">0168-1702</idno>
<idno type="eISSN">1872-7492</idno>
<imprint><date when="2015">2015</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc><textClass></textClass>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en"><title>Highlights</title>
<p><list list-type="simple" id="lis0005"><list-item id="lsti0005"><label>•</label>
<p id="par0005">Models of conserved 5′ and 3′ betacoronavirus <italic>cis</italic>
-acting RNA secondary structures are presented.</p>
</list-item>
<list-item id="lsti0010"><label>•</label>
<p id="par0010">The 5′ <italic>cis</italic>
-acting sequences required for coronavirus replication extend into the first open reading frame.</p>
</list-item>
<list-item id="lsti0015"><label>•</label>
<p id="par0015">All 3′ <italic>cis</italic>
-acting sequences required for coronavirus replication are contained in the 3′UTR.</p>
</list-item>
<list-item id="lsti0020"><label>•</label>
<p id="par0020">A putative molecular switch is present in the coronavirus 3′UTR.</p>
</list-item>
<list-item id="lsti0025"><label>•</label>
<p id="par0025">Proteins interacting with these <italic>cis</italic>
-acting regions are reviewed.</p>
</list-item>
</list>
</p>
</div>
</front>
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</pmc>
<pubmed><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">The structure and functions of coronavirus genomic 3' and 5' ends.</title>
<author><name sortKey="Yang, Dong" sort="Yang, Dong" uniqKey="Yang D" first="Dong" last="Yang">Dong Yang</name>
<affiliation wicri:level="2"><nlm:affiliation>Department of Microbiology, Immunology & Biochemistry, The University of Tennessee Health Science Center College of Medicine, Memphis, TN 38163, USA.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Microbiology, Immunology & Biochemistry, The University of Tennessee Health Science Center College of Medicine, Memphis, TN 38163</wicri:regionArea>
<placeName><region type="state">Tennessee</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Leibowitz, Julian L" sort="Leibowitz, Julian L" uniqKey="Leibowitz J" first="Julian L" last="Leibowitz">Julian L. Leibowitz</name>
<affiliation wicri:level="2"><nlm:affiliation>Department of Microbial Pathogenesis and Immunology, Texas A&M University, College of Medicine, College Station, TX 77843-1114, USA. Electronic address: jleibowitz@tamu.edu.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Microbial Pathogenesis and Immunology, Texas A&M University, College of Medicine, College Station, TX 77843-1114</wicri:regionArea>
<placeName><region type="state">Texas</region>
</placeName>
</affiliation>
</author>
</titleStmt>
<publicationStmt><idno type="wicri:source">PubMed</idno>
<date when="2015">2015</date>
<idno type="RBID">pubmed:25736566</idno>
<idno type="pmid">25736566</idno>
<idno type="doi">10.1016/j.virusres.2015.02.025</idno>
<idno type="wicri:Area/PubMed/Corpus">001682</idno>
<idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Corpus" wicri:corpus="PubMed">001682</idno>
<idno type="wicri:Area/PubMed/Curation">001682</idno>
<idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Curation">001682</idno>
<idno type="wicri:Area/PubMed/Checkpoint">001307</idno>
<idno type="wicri:explorRef" wicri:stream="Checkpoint" wicri:step="PubMed">001307</idno>
</publicationStmt>
<sourceDesc><biblStruct><analytic><title xml:lang="en">The structure and functions of coronavirus genomic 3' and 5' ends.</title>
<author><name sortKey="Yang, Dong" sort="Yang, Dong" uniqKey="Yang D" first="Dong" last="Yang">Dong Yang</name>
<affiliation wicri:level="2"><nlm:affiliation>Department of Microbiology, Immunology & Biochemistry, The University of Tennessee Health Science Center College of Medicine, Memphis, TN 38163, USA.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Microbiology, Immunology & Biochemistry, The University of Tennessee Health Science Center College of Medicine, Memphis, TN 38163</wicri:regionArea>
<placeName><region type="state">Tennessee</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Leibowitz, Julian L" sort="Leibowitz, Julian L" uniqKey="Leibowitz J" first="Julian L" last="Leibowitz">Julian L. Leibowitz</name>
<affiliation wicri:level="2"><nlm:affiliation>Department of Microbial Pathogenesis and Immunology, Texas A&M University, College of Medicine, College Station, TX 77843-1114, USA. Electronic address: jleibowitz@tamu.edu.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Microbial Pathogenesis and Immunology, Texas A&M University, College of Medicine, College Station, TX 77843-1114</wicri:regionArea>
<placeName><region type="state">Texas</region>
</placeName>
</affiliation>
</author>
</analytic>
<series><title level="j">Virus research</title>
<idno type="eISSN">1872-7492</idno>
<imprint><date when="2015" type="published">2015</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>3' Untranslated Regions</term>
<term>5' Untranslated Regions</term>
<term>Animals</term>
<term>Conserved Sequence</term>
<term>Coronavirus (genetics)</term>
<term>Coronavirus (physiology)</term>
<term>Genome, Viral</term>
<term>Host-Pathogen Interactions</term>
<term>Humans</term>
<term>Models, Biological</term>
<term>Nucleic Acid Conformation</term>
<term>Promoter Regions, Genetic</term>
<term>RNA, Viral (chemistry)</term>
<term>RNA, Viral (genetics)</term>
<term>RNA, Viral (metabolism)</term>
<term>RNA-Binding Proteins (metabolism)</term>
<term>Transcription, Genetic</term>
<term>Virus Replication</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr"><term>ARN viral ()</term>
<term>ARN viral (génétique)</term>
<term>ARN viral (métabolisme)</term>
<term>Animaux</term>
<term>Conformation d'acide nucléique</term>
<term>Coronavirus (génétique)</term>
<term>Coronavirus (physiologie)</term>
<term>Génome viral</term>
<term>Humains</term>
<term>Interactions hôte-pathogène</term>
<term>Modèles biologiques</term>
<term>Protéines de liaison à l'ARN (métabolisme)</term>
<term>Régions 3' non traduites</term>
<term>Régions 5' non traduites</term>
<term>Régions promotrices (génétique)</term>
<term>Réplication virale</term>
<term>Séquence conservée</term>
<term>Transcription génétique</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en"><term>RNA, Viral</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>RNA, Viral</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>RNA, Viral</term>
<term>RNA-Binding Proteins</term>
</keywords>
<keywords scheme="MESH" type="chemical" xml:lang="en"><term>3' Untranslated Regions</term>
<term>5' Untranslated Regions</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Coronavirus</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>ARN viral</term>
<term>Coronavirus</term>
</keywords>
<keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>ARN viral</term>
<term>Protéines de liaison à l'ARN</term>
</keywords>
<keywords scheme="MESH" qualifier="physiologie" xml:lang="fr"><term>Coronavirus</term>
</keywords>
<keywords scheme="MESH" qualifier="physiology" xml:lang="en"><term>Coronavirus</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Animals</term>
<term>Conserved Sequence</term>
<term>Genome, Viral</term>
<term>Host-Pathogen Interactions</term>
<term>Humans</term>
<term>Models, Biological</term>
<term>Nucleic Acid Conformation</term>
<term>Promoter Regions, Genetic</term>
<term>Transcription, Genetic</term>
<term>Virus Replication</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr"><term>ARN viral</term>
<term>Animaux</term>
<term>Conformation d'acide nucléique</term>
<term>Génome viral</term>
<term>Humains</term>
<term>Interactions hôte-pathogène</term>
<term>Modèles biologiques</term>
<term>Régions 3' non traduites</term>
<term>Régions 5' non traduites</term>
<term>Régions promotrices (génétique)</term>
<term>Réplication virale</term>
<term>Séquence conservée</term>
<term>Transcription génétique</term>
</keywords>
</textClass>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en">Coronaviruses (CoVs) are an important cause of illness in humans and animals. Most human coronaviruses commonly cause relatively mild respiratory illnesses; however two zoonotic coronaviruses, SARS-CoV and MERS-CoV, can cause severe illness and death. Investigations over the past 35 years have illuminated many aspects of coronavirus replication. The focus of this review is the functional analysis of conserved RNA secondary structures in the 5' and 3' of the betacoronavirus genomes. The 5' 350 nucleotides folds into a set of RNA secondary structures which are well conserved, and reverse genetic studies indicate that these structures play an important role in the discontinuous synthesis of subgenomic RNAs in the betacoronaviruses. These cis-acting elements extend 3' of the 5'UTR into ORF1a. The 3'UTR is similarly conserved and contains all of the cis-acting sequences necessary for viral replication. Two competing conformations near the 5' end of the 3'UTR have been shown to make up a potential molecular switch. There is some evidence that an association between the 3' and 5'UTRs is necessary for subgenomic RNA synthesis, but the basis for this association is not yet clear. A number of host RNA proteins have been shown to bind to the 5' and 3' cis-acting regions, but the significance of these in viral replication is not clear. Two viral proteins have been identified as binding to the 5' cis-acting region, nsp1 and N protein. A genetic interaction between nsp8 and nsp9 and the region of the 3'UTR that contains the putative molecular switch suggests that these two proteins bind to this region. </div>
</front>
</TEI>
</pubmed>
</double>
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