RAD tag sequencing as a source of SNP markers in Cynara cardunculus L
Identifieur interne : 000915 ( Ncbi/Checkpoint ); précédent : 000914; suivant : 000916RAD tag sequencing as a source of SNP markers in Cynara cardunculus L
Auteurs : Davide Scaglione [Italie] ; Alberto Acquadro [Italie] ; Ezio Portis [Italie] ; Matteo Tirone [Italie] ; Steven J. Knapp ; Sergio Lanteri [Italie]Source :
- BMC Genomics [ 1471-2164 ] ; 2012.
Descripteurs français
- KwdFr :
- MESH :
English descriptors
- KwdEn :
- MESH :
- chemical , genetics : Genetic Markers.
- chemical , metabolism : DNA Restriction Enzymes.
- genetics : Cynara.
- Contig Mapping, Gene Frequency, Genetic Linkage, Heterozygote, Polymorphism, Single Nucleotide, Sequence Analysis, DNA.
Abstract
The globe artichoke (
RAD tags were sequenced from the genomic DNA of three
The RAD tag sequencing approach is a cost-effective and rapid method to develop SNP markers in a highly heterozygous species. Our approach permitted to generate a large and robust SNP datasets by the adoption of optimized filtering criteria.
Url:
DOI: 10.1186/1471-2164-13-3
PubMed: 22214349
PubMed Central: 3269995
Affiliations:
Links toward previous steps (curation, corpus...)
- to stream Pmc, to step Corpus: 000A97
- to stream Pmc, to step Curation: 000A97
- to stream Pmc, to step Checkpoint: 001288
- to stream PubMed, to step Corpus: 001E21
- to stream PubMed, to step Curation: 001E21
- to stream PubMed, to step Checkpoint: 001C45
- to stream Ncbi, to step Merge: 000915
- to stream Ncbi, to step Curation: 000915
Links to Exploration step
PMC:3269995Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">RAD tag sequencing as a source of SNP markers in <italic>Cynara cardunculus </italic>
L</title>
<author><name sortKey="Scaglione, Davide" sort="Scaglione, Davide" uniqKey="Scaglione D" first="Davide" last="Scaglione">Davide Scaglione</name>
<affiliation wicri:level="1"><nlm:aff id="I1">Di.Va.P.R.A. Plant Genetics and Breeding, University of Torino, via L. da Vinci 44, 10095 Grugliasco (Torino), Italy</nlm:aff>
<country xml:lang="fr">Italie</country>
<wicri:regionArea>Di.Va.P.R.A. Plant Genetics and Breeding, University of Torino, via L. da Vinci 44, 10095 Grugliasco (Torino)</wicri:regionArea>
<wicri:noRegion>10095 Grugliasco (Torino)</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Acquadro, Alberto" sort="Acquadro, Alberto" uniqKey="Acquadro A" first="Alberto" last="Acquadro">Alberto Acquadro</name>
<affiliation wicri:level="1"><nlm:aff id="I1">Di.Va.P.R.A. Plant Genetics and Breeding, University of Torino, via L. da Vinci 44, 10095 Grugliasco (Torino), Italy</nlm:aff>
<country xml:lang="fr">Italie</country>
<wicri:regionArea>Di.Va.P.R.A. Plant Genetics and Breeding, University of Torino, via L. da Vinci 44, 10095 Grugliasco (Torino)</wicri:regionArea>
<wicri:noRegion>10095 Grugliasco (Torino)</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Portis, Ezio" sort="Portis, Ezio" uniqKey="Portis E" first="Ezio" last="Portis">Ezio Portis</name>
<affiliation wicri:level="1"><nlm:aff id="I1">Di.Va.P.R.A. Plant Genetics and Breeding, University of Torino, via L. da Vinci 44, 10095 Grugliasco (Torino), Italy</nlm:aff>
<country xml:lang="fr">Italie</country>
<wicri:regionArea>Di.Va.P.R.A. Plant Genetics and Breeding, University of Torino, via L. da Vinci 44, 10095 Grugliasco (Torino)</wicri:regionArea>
<wicri:noRegion>10095 Grugliasco (Torino)</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Tirone, Matteo" sort="Tirone, Matteo" uniqKey="Tirone M" first="Matteo" last="Tirone">Matteo Tirone</name>
<affiliation wicri:level="1"><nlm:aff id="I1">Di.Va.P.R.A. Plant Genetics and Breeding, University of Torino, via L. da Vinci 44, 10095 Grugliasco (Torino), Italy</nlm:aff>
<country xml:lang="fr">Italie</country>
<wicri:regionArea>Di.Va.P.R.A. Plant Genetics and Breeding, University of Torino, via L. da Vinci 44, 10095 Grugliasco (Torino)</wicri:regionArea>
<wicri:noRegion>10095 Grugliasco (Torino)</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Knapp, Steven J" sort="Knapp, Steven J" uniqKey="Knapp S" first="Steven J" last="Knapp">Steven J. Knapp</name>
<affiliation><nlm:aff id="I2">Institute for Plant Breeding, Genetics, and Genomics, University of Georgia, 111 Riverbend Rd., 30602 Athens, Georgia USA</nlm:aff>
<wicri:noCountry code="subfield">Georgia USA</wicri:noCountry>
</affiliation>
</author>
<author><name sortKey="Lanteri, Sergio" sort="Lanteri, Sergio" uniqKey="Lanteri S" first="Sergio" last="Lanteri">Sergio Lanteri</name>
<affiliation wicri:level="1"><nlm:aff id="I1">Di.Va.P.R.A. Plant Genetics and Breeding, University of Torino, via L. da Vinci 44, 10095 Grugliasco (Torino), Italy</nlm:aff>
<country xml:lang="fr">Italie</country>
<wicri:regionArea>Di.Va.P.R.A. Plant Genetics and Breeding, University of Torino, via L. da Vinci 44, 10095 Grugliasco (Torino)</wicri:regionArea>
<wicri:noRegion>10095 Grugliasco (Torino)</wicri:noRegion>
</affiliation>
</author>
</titleStmt>
<publicationStmt><idno type="wicri:source">PMC</idno>
<idno type="pmid">22214349</idno>
<idno type="pmc">3269995</idno>
<idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3269995</idno>
<idno type="RBID">PMC:3269995</idno>
<idno type="doi">10.1186/1471-2164-13-3</idno>
<date when="2012">2012</date>
<idno type="wicri:Area/Pmc/Corpus">000A97</idno>
<idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Corpus" wicri:corpus="PMC">000A97</idno>
<idno type="wicri:Area/Pmc/Curation">000A97</idno>
<idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Curation">000A97</idno>
<idno type="wicri:Area/Pmc/Checkpoint">001288</idno>
<idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Checkpoint">001288</idno>
<idno type="wicri:source">PubMed</idno>
<idno type="RBID">pubmed:22214349</idno>
<idno type="wicri:Area/PubMed/Corpus">001E21</idno>
<idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Corpus" wicri:corpus="PubMed">001E21</idno>
<idno type="wicri:Area/PubMed/Curation">001E21</idno>
<idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Curation">001E21</idno>
<idno type="wicri:Area/PubMed/Checkpoint">001C45</idno>
<idno type="wicri:explorRef" wicri:stream="Checkpoint" wicri:step="PubMed">001C45</idno>
<idno type="wicri:Area/Ncbi/Merge">000915</idno>
<idno type="wicri:Area/Ncbi/Curation">000915</idno>
<idno type="wicri:Area/Ncbi/Checkpoint">000915</idno>
</publicationStmt>
<sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">RAD tag sequencing as a source of SNP markers in <italic>Cynara cardunculus </italic>
L</title>
<author><name sortKey="Scaglione, Davide" sort="Scaglione, Davide" uniqKey="Scaglione D" first="Davide" last="Scaglione">Davide Scaglione</name>
<affiliation wicri:level="1"><nlm:aff id="I1">Di.Va.P.R.A. Plant Genetics and Breeding, University of Torino, via L. da Vinci 44, 10095 Grugliasco (Torino), Italy</nlm:aff>
<country xml:lang="fr">Italie</country>
<wicri:regionArea>Di.Va.P.R.A. Plant Genetics and Breeding, University of Torino, via L. da Vinci 44, 10095 Grugliasco (Torino)</wicri:regionArea>
<wicri:noRegion>10095 Grugliasco (Torino)</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Acquadro, Alberto" sort="Acquadro, Alberto" uniqKey="Acquadro A" first="Alberto" last="Acquadro">Alberto Acquadro</name>
<affiliation wicri:level="1"><nlm:aff id="I1">Di.Va.P.R.A. Plant Genetics and Breeding, University of Torino, via L. da Vinci 44, 10095 Grugliasco (Torino), Italy</nlm:aff>
<country xml:lang="fr">Italie</country>
<wicri:regionArea>Di.Va.P.R.A. Plant Genetics and Breeding, University of Torino, via L. da Vinci 44, 10095 Grugliasco (Torino)</wicri:regionArea>
<wicri:noRegion>10095 Grugliasco (Torino)</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Portis, Ezio" sort="Portis, Ezio" uniqKey="Portis E" first="Ezio" last="Portis">Ezio Portis</name>
<affiliation wicri:level="1"><nlm:aff id="I1">Di.Va.P.R.A. Plant Genetics and Breeding, University of Torino, via L. da Vinci 44, 10095 Grugliasco (Torino), Italy</nlm:aff>
<country xml:lang="fr">Italie</country>
<wicri:regionArea>Di.Va.P.R.A. Plant Genetics and Breeding, University of Torino, via L. da Vinci 44, 10095 Grugliasco (Torino)</wicri:regionArea>
<wicri:noRegion>10095 Grugliasco (Torino)</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Tirone, Matteo" sort="Tirone, Matteo" uniqKey="Tirone M" first="Matteo" last="Tirone">Matteo Tirone</name>
<affiliation wicri:level="1"><nlm:aff id="I1">Di.Va.P.R.A. Plant Genetics and Breeding, University of Torino, via L. da Vinci 44, 10095 Grugliasco (Torino), Italy</nlm:aff>
<country xml:lang="fr">Italie</country>
<wicri:regionArea>Di.Va.P.R.A. Plant Genetics and Breeding, University of Torino, via L. da Vinci 44, 10095 Grugliasco (Torino)</wicri:regionArea>
<wicri:noRegion>10095 Grugliasco (Torino)</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Knapp, Steven J" sort="Knapp, Steven J" uniqKey="Knapp S" first="Steven J" last="Knapp">Steven J. Knapp</name>
<affiliation><nlm:aff id="I2">Institute for Plant Breeding, Genetics, and Genomics, University of Georgia, 111 Riverbend Rd., 30602 Athens, Georgia USA</nlm:aff>
<wicri:noCountry code="subfield">Georgia USA</wicri:noCountry>
</affiliation>
</author>
<author><name sortKey="Lanteri, Sergio" sort="Lanteri, Sergio" uniqKey="Lanteri S" first="Sergio" last="Lanteri">Sergio Lanteri</name>
<affiliation wicri:level="1"><nlm:aff id="I1">Di.Va.P.R.A. Plant Genetics and Breeding, University of Torino, via L. da Vinci 44, 10095 Grugliasco (Torino), Italy</nlm:aff>
<country xml:lang="fr">Italie</country>
<wicri:regionArea>Di.Va.P.R.A. Plant Genetics and Breeding, University of Torino, via L. da Vinci 44, 10095 Grugliasco (Torino)</wicri:regionArea>
<wicri:noRegion>10095 Grugliasco (Torino)</wicri:noRegion>
</affiliation>
</author>
</analytic>
<series><title level="j">BMC Genomics</title>
<idno type="eISSN">1471-2164</idno>
<imprint><date when="2012">2012</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Contig Mapping</term>
<term>Cynara (genetics)</term>
<term>DNA Restriction Enzymes (metabolism)</term>
<term>Gene Frequency</term>
<term>Genetic Linkage</term>
<term>Genetic Markers (genetics)</term>
<term>Heterozygote</term>
<term>Polymorphism, Single Nucleotide</term>
<term>Sequence Analysis, DNA</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr"><term>Analyse de séquence d'ADN</term>
<term>Cartographie de contigs</term>
<term>Cynara (génétique)</term>
<term>DNA restriction enzymes (métabolisme)</term>
<term>Fréquence d'allèle</term>
<term>Hétérozygote</term>
<term>Liaison génétique</term>
<term>Marqueurs génétiques (génétique)</term>
<term>Polymorphisme de nucléotide simple</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Genetic Markers</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>DNA Restriction Enzymes</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Cynara</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Cynara</term>
<term>Marqueurs génétiques</term>
</keywords>
<keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>DNA restriction enzymes</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Contig Mapping</term>
<term>Gene Frequency</term>
<term>Genetic Linkage</term>
<term>Heterozygote</term>
<term>Polymorphism, Single Nucleotide</term>
<term>Sequence Analysis, DNA</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr"><term>Analyse de séquence d'ADN</term>
<term>Cartographie de contigs</term>
<term>Fréquence d'allèle</term>
<term>Hétérozygote</term>
<term>Liaison génétique</term>
<term>Polymorphisme de nucléotide simple</term>
</keywords>
</textClass>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en"><sec><title>Background</title>
<p>The globe artichoke (<italic>Cynara cardunculus </italic>
L. var. <italic>scolymus</italic>
) genome is relatively poorly explored, especially compared to those of the other major <italic>Asteraceae </italic>
crops sunflower and lettuce. No SNP markers are in the public domain. We have combined the recently developed restriction-site associated DNA (RAD) approach with the Illumina DNA sequencing platform to effect the rapid and mass discovery of SNP markers for <italic>C. cardunculus</italic>
.</p>
</sec>
<sec><title>Results</title>
<p>RAD tags were sequenced from the genomic DNA of three <italic>C. cardunculus </italic>
mapping population parents, generating 9.7 million reads, corresponding to ~1 Gbp of sequence. An assembly based on paired ends produced ~6.0 Mbp of genomic sequence, separated into ~19,000 contigs (mean length 312 bp), of which ~21% were fragments of putative coding sequence. The shared sequences allowed for the discovery of ~34,000 SNPs and nearly 800 indels, equivalent to a SNP frequency of 5.6 per 1,000 nt, and an indel frequency of 0.2 per 1,000 nt. A sample of heterozygous SNP loci was mapped by CAPS assays and this exercise provided validation of our mining criteria. The repetitive fraction of the genome had a high representation of retrotransposon sequence, followed by simple repeats, AT-low complexity regions and mobile DNA elements. The genomic k-mers distribution and CpG rate of <italic>C. cardunculus</italic>
, compared with data derived from three whole genome-sequenced dicots species, provided a further evidence of the random representation of the <italic>C. cardunculus </italic>
genome generated by RAD sampling.</p>
</sec>
<sec><title>Conclusion</title>
<p>The RAD tag sequencing approach is a cost-effective and rapid method to develop SNP markers in a highly heterozygous species. Our approach permitted to generate a large and robust SNP datasets by the adoption of optimized filtering criteria.</p>
</sec>
</div>
</front>
<back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Marie, D" uniqKey="Marie D">D Marie</name>
</author>
<author><name sortKey="Brown, S" uniqKey="Brown S">S Brown</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Rottenberg, A" uniqKey="Rottenberg A">A Rottenberg</name>
</author>
<author><name sortKey="Zohary, D" uniqKey="Zohary D">D Zohary</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Shimoda, H" uniqKey="Shimoda H">H Shimoda</name>
</author>
<author><name sortKey="Ninomiya, K" uniqKey="Ninomiya K">K Ninomiya</name>
</author>
<author><name sortKey="Nishida, N" uniqKey="Nishida N">N Nishida</name>
</author>
<author><name sortKey="Yoshino, T" uniqKey="Yoshino T">T Yoshino</name>
</author>
<author><name sortKey="Morikawa, T" uniqKey="Morikawa T">T Morikawa</name>
</author>
<author><name sortKey="Matsuda, H" uniqKey="Matsuda H">H Matsuda</name>
</author>
<author><name sortKey="Yoshikawa, M" uniqKey="Yoshikawa M">M Yoshikawa</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Gebhardt, R" uniqKey="Gebhardt R">R Gebhardt</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Gebhardt, R" uniqKey="Gebhardt R">R Gebhardt</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Schutz, K" uniqKey="Schutz K">K Schutz</name>
</author>
<author><name sortKey="Kammerer, D" uniqKey="Kammerer D">D Kammerer</name>
</author>
<author><name sortKey="Carle, R" uniqKey="Carle R">R Carle</name>
</author>
<author><name sortKey="Schieber, A" uniqKey="Schieber A">A Schieber</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Ierna, A" uniqKey="Ierna A">A Ierna</name>
</author>
<author><name sortKey="Mauromicale, G" uniqKey="Mauromicale G">G Mauromicale</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Raccuia, S" uniqKey="Raccuia S">S Raccuia</name>
</author>
<author><name sortKey="Melilli, M" uniqKey="Melilli M">M Melilli</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Encinar, J" uniqKey="Encinar J">J Encinar</name>
</author>
<author><name sortKey="Gonzalez, J" uniqKey="Gonzalez J">J Gonzalez</name>
</author>
<author><name sortKey="Rodriguez, J" uniqKey="Rodriguez J">J Rodriguez</name>
</author>
<author><name sortKey="Tejedor, A" uniqKey="Tejedor A">A Tejedor</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Encinar, J" uniqKey="Encinar J">J Encinar</name>
</author>
<author><name sortKey="Gonzalez, J" uniqKey="Gonzalez J">J Gonzalez</name>
</author>
<author><name sortKey="Gonzalez, J" uniqKey="Gonzalez J">J Gonzalez</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Lanteri, S" uniqKey="Lanteri S">S Lanteri</name>
</author>
<author><name sortKey="Acquadro, A" uniqKey="Acquadro A">A Acquadro</name>
</author>
<author><name sortKey="Comino, C" uniqKey="Comino C">C Comino</name>
</author>
<author><name sortKey="Mauro, R" uniqKey="Mauro R">R Mauro</name>
</author>
<author><name sortKey="Mauromicale, G" uniqKey="Mauromicale G">G Mauromicale</name>
</author>
<author><name sortKey="Portis, E" uniqKey="Portis E">E Portis</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Portis, E" uniqKey="Portis E">E Portis</name>
</author>
<author><name sortKey="Mauromicale, G" uniqKey="Mauromicale G">G Mauromicale</name>
</author>
<author><name sortKey="Mauro, R" uniqKey="Mauro R">R Mauro</name>
</author>
<author><name sortKey="Acquadro, A" uniqKey="Acquadro A">A Acquadro</name>
</author>
<author><name sortKey="Scaglione, D" uniqKey="Scaglione D">D Scaglione</name>
</author>
<author><name sortKey="Lanteri, S" uniqKey="Lanteri S">S Lanteri</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Sonnante, G" uniqKey="Sonnante G">G Sonnante</name>
</author>
<author><name sortKey="Gatto, A" uniqKey="Gatto A">A Gatto</name>
</author>
<author><name sortKey="Morgese, A" uniqKey="Morgese A">A Morgese</name>
</author>
<author><name sortKey="Montemurro, F" uniqKey="Montemurro F">F Montemurro</name>
</author>
<author><name sortKey="Sarli, G" uniqKey="Sarli G">G Sarli</name>
</author>
<author><name sortKey="Blanco, E" uniqKey="Blanco E">E Blanco</name>
</author>
<author><name sortKey="Pignone, D" uniqKey="Pignone D">D Pignone</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Scaglione, D" uniqKey="Scaglione D">D Scaglione</name>
</author>
<author><name sortKey="Acquadro, A" uniqKey="Acquadro A">A Acquadro</name>
</author>
<author><name sortKey="Portis, E" uniqKey="Portis E">E Portis</name>
</author>
<author><name sortKey="Taylor, C" uniqKey="Taylor C">C Taylor</name>
</author>
<author><name sortKey="Lanteri, S" uniqKey="Lanteri S">S Lanteri</name>
</author>
<author><name sortKey="Knapp, S" uniqKey="Knapp S">S Knapp</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Portis, E" uniqKey="Portis E">E Portis</name>
</author>
<author><name sortKey="Acquadro, A" uniqKey="Acquadro A">A Acquadro</name>
</author>
<author><name sortKey="Scaglione, D" uniqKey="Scaglione D">D Scaglione</name>
</author>
<author><name sortKey="Comino, C" uniqKey="Comino C">C Comino</name>
</author>
<author><name sortKey="Mauromicale, G" uniqKey="Mauromicale G">G Mauromicale</name>
</author>
<author><name sortKey="Mauro, R" uniqKey="Mauro R">R Mauro</name>
</author>
<author><name sortKey="Taylor, C" uniqKey="Taylor C">C Taylor</name>
</author>
<author><name sortKey="Knapp, S" uniqKey="Knapp S">S Knapp</name>
</author>
<author><name sortKey="Lanteri, S" uniqKey="Lanteri S">S Lanteri</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Portis, E" uniqKey="Portis E">E Portis</name>
</author>
<author><name sortKey="Acquadro, A" uniqKey="Acquadro A">A Acquadro</name>
</author>
<author><name sortKey="Scaglione, D" uniqKey="Scaglione D">D Scaglione</name>
</author>
<author><name sortKey="Mauromicale, G" uniqKey="Mauromicale G">G Mauromicale</name>
</author>
<author><name sortKey="Mauro, R" uniqKey="Mauro R">R Mauro</name>
</author>
<author><name sortKey="Taylor, Ca" uniqKey="Taylor C">CA Taylor</name>
</author>
<author><name sortKey="Knapp, Sj" uniqKey="Knapp S">SJ Knapp</name>
</author>
<author><name sortKey="Lanteri, S" uniqKey="Lanteri S">S Lanteri</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Miller, M" uniqKey="Miller M">M Miller</name>
</author>
<author><name sortKey="Dunham, J" uniqKey="Dunham J">J Dunham</name>
</author>
<author><name sortKey="Amores, A" uniqKey="Amores A">A Amores</name>
</author>
<author><name sortKey="Cresko, W" uniqKey="Cresko W">W Cresko</name>
</author>
<author><name sortKey="Johnson, E" uniqKey="Johnson E">E Johnson</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Baird, N" uniqKey="Baird N">N Baird</name>
</author>
<author><name sortKey="Etter, P" uniqKey="Etter P">P Etter</name>
</author>
<author><name sortKey="Atwood, T" uniqKey="Atwood T">T Atwood</name>
</author>
<author><name sortKey="Currey, M" uniqKey="Currey M">M Currey</name>
</author>
<author><name sortKey="Shiver, A" uniqKey="Shiver A">A Shiver</name>
</author>
<author><name sortKey="Lewis, Z" uniqKey="Lewis Z">Z Lewis</name>
</author>
<author><name sortKey="Selker, E" uniqKey="Selker E">E Selker</name>
</author>
<author><name sortKey="Cresko, W" uniqKey="Cresko W">W Cresko</name>
</author>
<author><name sortKey="Johnson, E" uniqKey="Johnson E">E Johnson</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Pfender, Wf" uniqKey="Pfender W">WF Pfender</name>
</author>
<author><name sortKey="Saha, Mc" uniqKey="Saha M">MC Saha</name>
</author>
<author><name sortKey="Johnson, Ea" uniqKey="Johnson E">EA Johnson</name>
</author>
<author><name sortKey="Slabaugh, Ea" uniqKey="Slabaugh E">EA Slabaugh</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Chutimanitsakun, Y" uniqKey="Chutimanitsakun Y">Y Chutimanitsakun</name>
</author>
<author><name sortKey="Nipper, R" uniqKey="Nipper R">R Nipper</name>
</author>
<author><name sortKey="Cuesta Marcos, A" uniqKey="Cuesta Marcos A">A Cuesta-Marcos</name>
</author>
<author><name sortKey="Cistue, L" uniqKey="Cistue L">L Cistue</name>
</author>
<author><name sortKey="Corey, A" uniqKey="Corey A">A Corey</name>
</author>
<author><name sortKey="Filichkina, T" uniqKey="Filichkina T">T Filichkina</name>
</author>
<author><name sortKey="Johnson, E" uniqKey="Johnson E">E Johnson</name>
</author>
<author><name sortKey="Hayes, P" uniqKey="Hayes P">P Hayes</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Barchi, L" uniqKey="Barchi L">L Barchi</name>
</author>
<author><name sortKey="Lanteri, S" uniqKey="Lanteri S">S Lanteri</name>
</author>
<author><name sortKey="Portis, E" uniqKey="Portis E">E Portis</name>
</author>
<author><name sortKey="Acquadro, A" uniqKey="Acquadro A">A Acquadro</name>
</author>
<author><name sortKey="Vale, G" uniqKey="Vale G">G Vale</name>
</author>
<author><name sortKey="Toppino, L" uniqKey="Toppino L">L Toppino</name>
</author>
<author><name sortKey="Rotino, Gl" uniqKey="Rotino G">GL Rotino</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Hohenlohe, P" uniqKey="Hohenlohe P">P Hohenlohe</name>
</author>
<author><name sortKey="Amish, S" uniqKey="Amish S">S Amish</name>
</author>
<author><name sortKey="Catchen, J" uniqKey="Catchen J">J Catchen</name>
</author>
<author><name sortKey="Allendorf, F" uniqKey="Allendorf F">F Allendorf</name>
</author>
<author><name sortKey="Luikart, G" uniqKey="Luikart G">G Luikart</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Kaul, S" uniqKey="Kaul S">S Kaul</name>
</author>
<author><name sortKey="Koo, H" uniqKey="Koo H">H Koo</name>
</author>
<author><name sortKey="Jenkins, J" uniqKey="Jenkins J">J Jenkins</name>
</author>
<author><name sortKey="Rizzo, M" uniqKey="Rizzo M">M Rizzo</name>
</author>
<author><name sortKey="Rooney, T" uniqKey="Rooney T">T Rooney</name>
</author>
<author><name sortKey="Tallon, L" uniqKey="Tallon L">L Tallon</name>
</author>
<author><name sortKey="Feldblyum, T" uniqKey="Feldblyum T">T Feldblyum</name>
</author>
<author><name sortKey="Nierman, W" uniqKey="Nierman W">W Nierman</name>
</author>
<author><name sortKey="Benito, M" uniqKey="Benito M">M Benito</name>
</author>
<author><name sortKey="Lin, X" uniqKey="Lin X">X Lin</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Jaillon, O" uniqKey="Jaillon O">O Jaillon</name>
</author>
<author><name sortKey="Aury, J" uniqKey="Aury J">J Aury</name>
</author>
<author><name sortKey="Noel, B" uniqKey="Noel B">B Noel</name>
</author>
<author><name sortKey="Policriti, A" uniqKey="Policriti A">A Policriti</name>
</author>
<author><name sortKey="Clepet, C" uniqKey="Clepet C">C Clepet</name>
</author>
<author><name sortKey="Casagrande, A" uniqKey="Casagrande A">A Casagrande</name>
</author>
<author><name sortKey="Choisne, N" uniqKey="Choisne N">N Choisne</name>
</author>
<author><name sortKey="Aubourg, S" uniqKey="Aubourg S">S Aubourg</name>
</author>
<author><name sortKey="Vitulo, N" uniqKey="Vitulo N">N Vitulo</name>
</author>
<author><name sortKey="Jubin, C" uniqKey="Jubin C">C Jubin</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Etter, Pd" uniqKey="Etter P">PD Etter</name>
</author>
<author><name sortKey="Preston, Jl" uniqKey="Preston J">JL Preston</name>
</author>
<author><name sortKey="Bassham, S" uniqKey="Bassham S">S Bassham</name>
</author>
<author><name sortKey="Cresko, Wa" uniqKey="Cresko W">WA Cresko</name>
</author>
<author><name sortKey="Johnson, Ea" uniqKey="Johnson E">EA Johnson</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Baxter, Sw" uniqKey="Baxter S">SW Baxter</name>
</author>
<author><name sortKey="Davey, Jw" uniqKey="Davey J">JW Davey</name>
</author>
<author><name sortKey="Johnston, Js" uniqKey="Johnston J">JS Johnston</name>
</author>
<author><name sortKey="Shelton, Am" uniqKey="Shelton A">AM Shelton</name>
</author>
<author><name sortKey="Heckel, Dg" uniqKey="Heckel D">DG Heckel</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Willing, Em" uniqKey="Willing E">EM Willing</name>
</author>
<author><name sortKey="Hoffmann, M" uniqKey="Hoffmann M">M Hoffmann</name>
</author>
<author><name sortKey="Klein, Jd" uniqKey="Klein J">JD Klein</name>
</author>
<author><name sortKey="Weigel, D" uniqKey="Weigel D">D Weigel</name>
</author>
<author><name sortKey="Dreyer, C" uniqKey="Dreyer C">C Dreyer</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Palmer, Le" uniqKey="Palmer L">LE Palmer</name>
</author>
<author><name sortKey="Rabinowicz, Pd" uniqKey="Rabinowicz P">PD Rabinowicz</name>
</author>
<author><name sortKey="O Shaughnessy, Al" uniqKey="O Shaughnessy A">AL O'Shaughnessy</name>
</author>
<author><name sortKey="Balija, Vs" uniqKey="Balija V">VS Balija</name>
</author>
<author><name sortKey="Nascimento, Lu" uniqKey="Nascimento L">LU Nascimento</name>
</author>
<author><name sortKey="Dike, S" uniqKey="Dike S">S Dike</name>
</author>
<author><name sortKey="De La Bastide, M" uniqKey="De La Bastide M">M de la Bastide</name>
</author>
<author><name sortKey="Martienssen, Ra" uniqKey="Martienssen R">RA Martienssen</name>
</author>
<author><name sortKey="Mccombie, Wr" uniqKey="Mccombie W">WR McCombie</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Chor, B" uniqKey="Chor B">B Chor</name>
</author>
<author><name sortKey="Horn, D" uniqKey="Horn D">D Horn</name>
</author>
<author><name sortKey="Goldman, N" uniqKey="Goldman N">N Goldman</name>
</author>
<author><name sortKey="Levy, Y" uniqKey="Levy Y">Y Levy</name>
</author>
<author><name sortKey="Massingham, T" uniqKey="Massingham T">T Massingham</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Slotkin, R" uniqKey="Slotkin R">R Slotkin</name>
</author>
<author><name sortKey="Vaughn, M" uniqKey="Vaughn M">M Vaughn</name>
</author>
<author><name sortKey="Borges, F" uniqKey="Borges F">F Borges</name>
</author>
<author><name sortKey="Tanurdzic, M" uniqKey="Tanurdzic M">M Tanurdzic</name>
</author>
<author><name sortKey="Becker, J" uniqKey="Becker J">J Becker</name>
</author>
<author><name sortKey="Feijo, J" uniqKey="Feijo J">J Feijo</name>
</author>
<author><name sortKey="Martienssen, R" uniqKey="Martienssen R">R Martienssen</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Lisch, D" uniqKey="Lisch D">D Lisch</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Karlin, S" uniqKey="Karlin S">S Karlin</name>
</author>
<author><name sortKey="Mrazek, J" uniqKey="Mrazek J">J Mrazek</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Shulaev, V" uniqKey="Shulaev V">V Shulaev</name>
</author>
<author><name sortKey="Sargent, D" uniqKey="Sargent D">D Sargent</name>
</author>
<author><name sortKey="Crowhurst, R" uniqKey="Crowhurst R">R Crowhurst</name>
</author>
<author><name sortKey="Mockler, T" uniqKey="Mockler T">T Mockler</name>
</author>
<author><name sortKey="Folkerts, O" uniqKey="Folkerts O">O Folkerts</name>
</author>
<author><name sortKey="Delcher, A" uniqKey="Delcher A">A Delcher</name>
</author>
<author><name sortKey="Jaiswal, P" uniqKey="Jaiswal P">P Jaiswal</name>
</author>
<author><name sortKey="Mockaitis, K" uniqKey="Mockaitis K">K Mockaitis</name>
</author>
<author><name sortKey="Liston, A" uniqKey="Liston A">A Liston</name>
</author>
<author><name sortKey="Mane, S" uniqKey="Mane S">S Mane</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Velasco, R" uniqKey="Velasco R">R Velasco</name>
</author>
<author><name sortKey="Zharkikh, A" uniqKey="Zharkikh A">A Zharkikh</name>
</author>
<author><name sortKey="Troggio, M" uniqKey="Troggio M">M Troggio</name>
</author>
<author><name sortKey="Cartwright, D" uniqKey="Cartwright D">D Cartwright</name>
</author>
<author><name sortKey="Cestaro, A" uniqKey="Cestaro A">A Cestaro</name>
</author>
<author><name sortKey="Pruss, D" uniqKey="Pruss D">D Pruss</name>
</author>
<author><name sortKey="Pindo, M" uniqKey="Pindo M">M Pindo</name>
</author>
<author><name sortKey="Fitzgerald, L" uniqKey="Fitzgerald L">L FitzGerald</name>
</author>
<author><name sortKey="Vezzulli, S" uniqKey="Vezzulli S">S Vezzulli</name>
</author>
<author><name sortKey="Reid, J" uniqKey="Reid J">J Reid</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Jiang, D" uniqKey="Jiang D">D Jiang</name>
</author>
<author><name sortKey="Ye, Q" uniqKey="Ye Q">Q Ye</name>
</author>
<author><name sortKey="Wang, F" uniqKey="Wang F">F Wang</name>
</author>
<author><name sortKey="Cao, L" uniqKey="Cao L">L Cao</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Portis, E" uniqKey="Portis E">E Portis</name>
</author>
<author><name sortKey="Mauromicale, G" uniqKey="Mauromicale G">G Mauromicale</name>
</author>
<author><name sortKey="Barchi, L" uniqKey="Barchi L">L Barchi</name>
</author>
<author><name sortKey="Mauro, R" uniqKey="Mauro R">R Mauro</name>
</author>
<author><name sortKey="Lanteri, S" uniqKey="Lanteri S">S Lanteri</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Stacey, K" uniqKey="Stacey K">K Stacey</name>
</author>
<author><name sortKey="Young, G" uniqKey="Young G">G Young</name>
</author>
<author><name sortKey="Clark, F" uniqKey="Clark F">F Clark</name>
</author>
<author><name sortKey="Sester, D" uniqKey="Sester D">D Sester</name>
</author>
<author><name sortKey="Roberts, T" uniqKey="Roberts T">T Roberts</name>
</author>
<author><name sortKey="Naik, S" uniqKey="Naik S">S Naik</name>
</author>
<author><name sortKey="Sweet, M" uniqKey="Sweet M">M Sweet</name>
</author>
<author><name sortKey="Hume, D" uniqKey="Hume D">D Hume</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Lanteri, S" uniqKey="Lanteri S">S Lanteri</name>
</author>
<author><name sortKey="Di Leo, I" uniqKey="Di Leo I">I Di Leo</name>
</author>
<author><name sortKey="Ledda, L" uniqKey="Ledda L">L Ledda</name>
</author>
<author><name sortKey="Mameli, M" uniqKey="Mameli M">M Mameli</name>
</author>
<author><name sortKey="Portis, E" uniqKey="Portis E">E Portis</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Zerbino, D" uniqKey="Zerbino D">D Zerbino</name>
</author>
<author><name sortKey="Birney, E" uniqKey="Birney E">E Birney</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Conesa, A" uniqKey="Conesa A">A Conesa</name>
</author>
<author><name sortKey="Gotz, S" uniqKey="Gotz S">S Gotz</name>
</author>
<author><name sortKey="Garcia Gomez, J" uniqKey="Garcia Gomez J">J Garcia-Gomez</name>
</author>
<author><name sortKey="Terol, J" uniqKey="Terol J">J Terol</name>
</author>
<author><name sortKey="Talon, M" uniqKey="Talon M">M Talon</name>
</author>
<author><name sortKey="Robles, M" uniqKey="Robles M">M Robles</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Marcais, G" uniqKey="Marcais G">G Marcais</name>
</author>
<author><name sortKey="Kingsford, C" uniqKey="Kingsford C">C Kingsford</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Li, H" uniqKey="Li H">H Li</name>
</author>
<author><name sortKey="Ruan, J" uniqKey="Ruan J">J Ruan</name>
</author>
<author><name sortKey="Durbin, R" uniqKey="Durbin R">R Durbin</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Thiel, T" uniqKey="Thiel T">T Thiel</name>
</author>
<author><name sortKey="Kota, R" uniqKey="Kota R">R Kota</name>
</author>
<author><name sortKey="Grosse, I" uniqKey="Grosse I">I Grosse</name>
</author>
<author><name sortKey="Stein, N" uniqKey="Stein N">N Stein</name>
</author>
<author><name sortKey="Graner, A" uniqKey="Graner A">A Graner</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="You, F" uniqKey="You F">F You</name>
</author>
<author><name sortKey="Huo, N" uniqKey="Huo N">N Huo</name>
</author>
<author><name sortKey="Gu, Y" uniqKey="Gu Y">Y Gu</name>
</author>
<author><name sortKey="Luo, M" uniqKey="Luo M">M Luo</name>
</author>
<author><name sortKey="Ma, Y" uniqKey="Ma Y">Y Ma</name>
</author>
<author><name sortKey="Hane, D" uniqKey="Hane D">D Hane</name>
</author>
<author><name sortKey="Lazo, G" uniqKey="Lazo G">G Lazo</name>
</author>
<author><name sortKey="Dvorak, J" uniqKey="Dvorak J">J Dvorak</name>
</author>
<author><name sortKey="Anderson, O" uniqKey="Anderson O">O Anderson</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Comino, C" uniqKey="Comino C">C Comino</name>
</author>
<author><name sortKey="Hehn, A" uniqKey="Hehn A">A Hehn</name>
</author>
<author><name sortKey="Moglia, A" uniqKey="Moglia A">A Moglia</name>
</author>
<author><name sortKey="Menin, B" uniqKey="Menin B">B Menin</name>
</author>
<author><name sortKey="Bourgaud, F" uniqKey="Bourgaud F">F Bourgaud</name>
</author>
<author><name sortKey="Lanteri, S" uniqKey="Lanteri S">S Lanteri</name>
</author>
<author><name sortKey="Portis, E" uniqKey="Portis E">E Portis</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Menin, B" uniqKey="Menin B">B Menin</name>
</author>
<author><name sortKey="Comino, C" uniqKey="Comino C">C Comino</name>
</author>
<author><name sortKey="Moglia, A" uniqKey="Moglia A">A Moglia</name>
</author>
<author><name sortKey="Dolzhenko, Y" uniqKey="Dolzhenko Y">Y Dolzhenko</name>
</author>
<author><name sortKey="Portis, E" uniqKey="Portis E">E Portis</name>
</author>
<author><name sortKey="Lanteri, S" uniqKey="Lanteri S">S Lanteri</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Van, O" uniqKey="Van O">O Van</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Voorrips, R" uniqKey="Voorrips R">R Voorrips</name>
</author>
</analytic>
</biblStruct>
</listBibl>
</div1>
</back>
</TEI>
<affiliations><list><country><li>Italie</li>
</country>
</list>
<tree><noCountry><name sortKey="Knapp, Steven J" sort="Knapp, Steven J" uniqKey="Knapp S" first="Steven J" last="Knapp">Steven J. Knapp</name>
</noCountry>
<country name="Italie"><noRegion><name sortKey="Scaglione, Davide" sort="Scaglione, Davide" uniqKey="Scaglione D" first="Davide" last="Scaglione">Davide Scaglione</name>
</noRegion>
<name sortKey="Acquadro, Alberto" sort="Acquadro, Alberto" uniqKey="Acquadro A" first="Alberto" last="Acquadro">Alberto Acquadro</name>
<name sortKey="Lanteri, Sergio" sort="Lanteri, Sergio" uniqKey="Lanteri S" first="Sergio" last="Lanteri">Sergio Lanteri</name>
<name sortKey="Portis, Ezio" sort="Portis, Ezio" uniqKey="Portis E" first="Ezio" last="Portis">Ezio Portis</name>
<name sortKey="Tirone, Matteo" sort="Tirone, Matteo" uniqKey="Tirone M" first="Matteo" last="Tirone">Matteo Tirone</name>
</country>
</tree>
</affiliations>
</record>
Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Sante/explor/MersV1/Data/Ncbi/Checkpoint
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000915 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Ncbi/Checkpoint/biblio.hfd -nk 000915 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien |wiki= Sante |area= MersV1 |flux= Ncbi |étape= Checkpoint |type= RBID |clé= PMC:3269995 |texte= RAD tag sequencing as a source of SNP markers in Cynara cardunculus L }}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Ncbi/Checkpoint/RBID.i -Sk "pubmed:22214349" \ | HfdSelect -Kh $EXPLOR_AREA/Data/Ncbi/Checkpoint/biblio.hfd \ | NlmPubMed2Wicri -a MersV1
This area was generated with Dilib version V0.6.33. |