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List of bibliographic references indexed by mer

Number of relevant bibliographic references: 79.
[0-50] [0 - 20][0 - 50][50-70]
Ident.Authors (with country if any)Title
000431 (2019) Yuyan Zhang [République populaire de Chine] ; Jia Wen [République populaire de Chine] ; Stephen S-T Yau [République populaire de Chine]Phylogenetic analysis of protein sequences based on a novel k-mer natural vector method.
000510 (2019) Matyas Cserhati [États-Unis] ; Peng Xiao [États-Unis] ; Chittibabu Guda [États-Unis]K-mer-Based Motif Analysis in Insect Species across Anopheles, Drosophila, and Glossina Genera and Its Application to Species Classification
000539 (2019) Chris Durden [États-Unis] ; Seth Sullivant [États-Unis]Identifiability of Phylogenetic Parameters from k-mer Data Under the Coalescent.
000614 (2019) Matko Glun I [Croatie] ; Ines Vlahovi [Croatie] ; Vladimir Paar [Croatie]Discovery of 33mer in chromosome 21 – the largest alpha satellite higher order repeat unit among all human somatic chromosomes
000687 (2019) Lee E. Korshoj [États-Unis] ; Prashant Nagpal [États-Unis]BOCS: DNA k-mer content and scoring for rapid genetic biomarker identification at low coverage.
000804 (2018) Prashant Pandey [États-Unis] ; Michael A. Bender [États-Unis] ; Rob Johnson [États-Unis] ; Rob Patro [États-Unis] ; Bonnie BergerSqueakr: an exact and approximate k-mer counting system.
000823 (2018) M D Grynberg [Argentine] ; F I Schaposnik Massolo [Corée du Sud]Roughening of k-mer-growing interfaces in stationary regimes.
000877 (2018) Martin Sauk [Estonie] ; Olga Žilina [Estonie] ; Ants Kurg [Estonie] ; Eva-Liina Ustav [Estonie] ; Maire Peters [Estonie] ; Priit Paluoja [Estonie] ; Anne Mari Roost [Estonie] ; Hindrek Teder [Estonie] ; Priit Palta [Estonie] ; Nathalie Brison [Belgique] ; Joris R. Vermeesch [Belgique] ; Kaarel Krjutškov [Estonie, Suède, Finlande] ; Andres Salumets [Estonie, Finlande] ; Lauris Kaplinski [Estonie]NIPTmer: rapid k-mer-based software package for detection of fetal aneuploidies
000964 (2018) Jessime M. Kirk [États-Unis] ; Susan O. Kim [États-Unis] ; Kaoru Inoue [États-Unis] ; Matthew J. Smola [États-Unis] ; David M. Lee [États-Unis] ; Megan D. Schertzer [États-Unis] ; Joshua S. Wooten [États-Unis] ; Allison R. Baker [États-Unis] ; Daniel Sprague [États-Unis] ; David W. Collins [États-Unis] ; Christopher R. Horning [États-Unis] ; Shuo Wang [États-Unis] ; Qidi Chen [États-Unis] ; Kevin M. Weeks [États-Unis] ; Peter J. Mucha [États-Unis] ; J Mauro Calabrese [États-Unis]Functional classification of long non-coding RNAs by k-mer content.
000A55 (2018) Carl G. De Boer [États-Unis] ; Aviv Regev [États-Unis]BROCKMAN: deciphering variance in epigenomic regulators by k-mer factorization
000B08 (2017) Anuj Gupta [États-Unis] ; I King Jordan [États-Unis] ; Lavanya Rishishwar [États-Unis]stringMLST: a fast k-mer based tool for multilocus sequence typing.
000B10 (2017) Jochen Kruppa ; Erhard Van Der Vries ; Wendy K. Jo ; Alexander Postel [Allemagne] ; Paul Becher [Allemagne] ; Albert Osterhaus ; Klaus JungkmerPyramid: an interactive visualization tool for nucleobase and k-mer frequencies.
000B32 (2017) Sanzhen Liu [États-Unis] ; Jun Zheng [République populaire de Chine] ; Pierre Migeon [États-Unis] ; Jie Ren [États-Unis] ; Ying Hu [États-Unis] ; Cheng He [République populaire de Chine] ; Hongjun Liu ; Junjie Fu [République populaire de Chine] ; Frank F. White [États-Unis] ; Christopher Toomajian [États-Unis] ; Guoying Wang [République populaire de Chine]Unbiased K-mer Analysis Reveals Changes in Copy Number of Highly Repetitive Sequences During Maize Domestication and Improvement
000B82 (2017) Elizabeth S. Allman [États-Unis] ; John A. Rhodes [États-Unis] ; Seth Sullivant [États-Unis]Statistically Consistent k-mer Methods for Phylogenetic Tree Reconstruction.
000B90 (2017) Maciej A. Walczak [États-Unis] ; Feng Zhu [États-Unis]Size Matters: Chemical Synthesis of a Homogenous Arabinogalactan 92-mer.
000B93 (2017) Vanessa Borges Pires [Portugal] ; Ricardo Sim Es [Portugal] ; Kamel Mamchaoui [France] ; Célia Carvalho [Portugal] ; Maria Carmo-Fonseca [Portugal]Short (16-mer) locked nucleic acid splice-switching oligonucleotides restore dystrophin production in Duchenne Muscular Dystrophy myotubes
000D25 (2017) Marek Kokot [Pologne] ; Maciej Dlugosz [Pologne] ; Sebastian Deorowicz [Pologne]KMC 3: counting and manipulating k-mer statistics.
000D26 (2017) Chang Sik Kim [Royaume-Uni] ; Martyn D. Winn ; Vipin Sachdeva [États-Unis] ; Kirk E. Jordan [États-Unis]K-mer clustering algorithm using a MapReduce framework: application to the parallelization of the Inchworm module of Trinity
000D53 (2017) Jeong-An Gim [Corée du Sud] ; Heui-Soo Kim [Corée du Sud]Identification and Expression of Equine MER-Derived miRNAs
001073 (2016) Amit Kumar Chatterjee [Inde] ; Bijoy Daga [Inde] ; P K Mohanty [Inde]Phase coexistence and spatial correlations in reconstituting k-mer models.
001186 (2016) Abdullah-Al Mamun [États-Unis] ; Soumitra Pal [États-Unis] ; Sanguthevar Rajasekaran [États-Unis]KCMBT: a k-mer Counter based on Multiple Burst Trees.
001187 (2016) Daniel Mapleson [Royaume-Uni] ; Gonzalo Garcia Accinelli [Royaume-Uni] ; George Kettleborough [Royaume-Uni] ; Jonathan Wright [Royaume-Uni] ; Bernardo J. Clavijo [Royaume-Uni]KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies
001208 (2016) Antonio Bernardo Carvalho [Brésil] ; Eduardo G. Dupim [Brésil] ; Gabriel Goldstein [Brésil]Improved assembly of noisy long reads by k-mer validation.
001253 (2016) Ariya Shajii [États-Unis] ; Deniz Yorukoglu ; Yun William Yu [États-Unis] ; Bonnie Berger [États-Unis]Fast genotyping of known SNPs through approximate k-mer matching.
001570 (2015) Karel B Inda [France] ; Maciej Sykulski [France] ; Gregory Kucherov [France]Spaced seeds improve k-mer-based metagenomic classification.
001602 (2015) Ezzeddin Kamil Mohamed Hashim [Malaisie] ; Rosni Abdullah [Malaisie]Rare k-mer DNA: Identification of sequence motifs and prediction of CpG island and promoter.
001608 (2015) Florian Plaza Onate [France] ; Jean-Michel Batto [France] ; Catherine Juste [France] ; Jehane Fadlallah [France] ; Cyrielle Fougeroux [France] ; Doriane Gouas [France] ; Nicolas Pons [France] ; Sean Kennedy [France] ; Florence Levenez [France] ; Joel Dore [France] ; S Dusko Ehrlich [France] ; Guy Gorochov [France] ; Martin Larsen [France]Quality control of microbiota metagenomics by k-mer analysis
001732 (2015) Sebastian Deorowicz [Pologne] ; Marek Kokot [Pologne] ; Szymon Grabowski [Pologne] ; Agnieszka Debudaj-Grabysz [Pologne]KMC 2: fast and resource-frugal k-mer counting.
001781 (2015) Lauris Kaplinski [Estonie] ; Maarja Lepamets [Estonie] ; Maido Remm [Estonie]GenomeTester4: a toolkit for performing basic set operations - union, intersection and complement on k-mer lists.
001807 (2015) Raffaele Giancarlo [États-Unis] ; Simona E. Rombo [États-Unis] ; Filippo Utro [États-Unis]Epigenomic k-mer dictionaries: shedding light on how sequence composition influences in vivo nucleosome positioning.
001858 (2015) Hilde Vinje ; Kristian Hovde Liland ; Trygve Alm Y ; Lars SnipenComparing K-mer based methods for improved classification of 16S sequences
001914 (2015) Le Van Vinh [Viêt Nam] ; Tran Van Lang ; Le Thanh Binh ; Tran Van Hoai [Viêt Nam]A two-phase binning algorithm using l-mer frequency on groups of non-overlapping reads.
001920 (2015) Antonino Fiannaca [Italie] ; Massimo La Rosa [Italie] ; Riccardo Rizzo [Italie] ; Alfonso Urso [Italie]A k-mer-based barcode DNA classification methodology based on spectral representation and a neural gas network.
001A11 (2014) Jia Wen [République populaire de Chine] ; Yuyan Zhang [République populaire de Chine] ; Stephen S T. Yau [République populaire de Chine]k-mer sparse matrix model for genetic sequence and its applications in sequence comparison.
001A48 (2014) Qingpeng Zhang [États-Unis] ; Jason Pell [États-Unis] ; Rosangela Canino-Koning [États-Unis] ; Adina Chuang Howe [États-Unis] ; C. Titus Brown [États-Unis]These Are Not the K-mers You Are Looking For: Efficient Online K-mer Counting Using a Probabilistic Data Structure
001A95 (2014) Mahmoud Ghandi [États-Unis] ; Morteza Mohammad-Noori ; Michael A. BeerRobust k-mer frequency estimation using gapped k-mers.
001C06 (2014) Páll Melsted [Islande] ; Bjarni V. Halld Rsson [Islande]KmerStream: streaming algorithms for k-mer abundance estimation.
001C08 (2014) Peter Audano ; Fredrik VannbergKAnalyze: a fast versatile pipelined K-mer toolkit
001C09 (2014) Jia Wen [Hong Kong] ; Raymond H F. Chan [Hong Kong] ; Shek-Chung Yau [Hong Kong] ; Rong L. He [États-Unis] ; Stephen S T. Yau [République populaire de Chine]K-mer natural vector and its application to the phylogenetic analysis of genetic sequences.
001D76 (2014) Elena S. Odintsova [Russie] ; Pavel S. Dmitrenok [Russie] ; Anna M. Timofeeva [Russie] ; Valentina N. Buneva [Russie] ; Georgy A. Nevinsky [Russie]Why specific anti‐integrase antibodies from HIV‐infected patients can efficiently hydrolyze 21‐mer oligopeptide corresponding to antigenic determinant of human myelin basic protein
001E88 (2013) Kung Ahn [Corée du Sud] ; Jeong-An Gim ; Hong-Seok Ha ; Kyudong Han ; Heui-Soo KimThe novel MER transposon-derived miRNAs in human genome.
001F73 (2013) Stephane Fenart [France] ; Malika Chabi [France] ; Sophie Gallina [France] ; Rudy Huis [France] ; Godfrey Neutelings [France] ; Nathalie Riviere [France] ; Brigitte Thomasset [France] ; Simon Hawkins [France] ; Anca Lucau-Danila [France]Intra-platform comparison of 25-mer and 60-mer oligonucleotide Nimblegen DNA microarrays
002022 (2013) Guillaume Rizk [France] ; Dominique Lavenier ; Rayan ChikhiDSK: k-mer counting with very low memory usage.
002033 (2013) Heejoon Chae [États-Unis] ; Jinwoo Park [Corée du Sud] ; Seong-Whan Lee [Corée du Sud] ; Kenneth P. Nephew [États-Unis] ; Sun Kim [Corée du Sud]Comparative analysis using K-mer and K-flank patterns provides evidence for CpG island sequence evolution in mammalian genomes
002047 (2013) Bo Jiang [États-Unis] ; Jun S. Liu ; Martha L. BulykBayesian hierarchical model of protein-binding microarray k-mer data reduces noise and identifies transcription factor subclasses and preferred k-mers.
002148 (2013) Raunaq Malhotra [États-Unis] ; Shruthi Prabhakara [États-Unis] ; Mary Poss [États-Unis] ; Raj Acharya [États-Unis]Estimating Viral Haplotypes in a Population Using k-mer Counting
002161 (2013) Paul Greenfield [Australie] ; Uwe Roehm [Australie]Answering biological questions by querying k‐mer databases
002281 (2012) Youngik Yang [États-Unis] ; Kenneth Nephew [États-Unis] ; Sun Kim [Corée du Sud]A novel k-mer mixture logistic regression for methylation susceptibility modeling of CpG dinucleotides in human gene promoters
002284 (2012) Tatiana Venkova-Canova [États-Unis] ; Anik Saha ; Dhruba K. ChattorajA 29-mer site regulates transcription of the initiator gene as well as function of the replication origin of Vibrio cholerae chromosome II.
002625 (2010) Xuejing Li [États-Unis] ; Casandra Panea [États-Unis] ; Chris H. Wiggins [États-Unis] ; Valerie Reinke [États-Unis] ; Christina Leslie [États-Unis]Learning “graph-mer” Motifs that Predict Gene Expression Trajectories in Development
002642 (2010) Géza Odor [Hongrie] ; Bartosz Liedke ; Karl-Heinz HeinigDirected d -mer diffusion describing the Kardar-Parisi-Zhang-type surface growth.

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