| Ident. | Authors (with country if any) | Title |
|---|
| 000338 (2019) |
Dylan Lebatteux [Canada] ; Amine M. Remita [Canada] ; Abdoulaye Baniré Diallo [Canada] | Toward an Alignment-Free Method for Feature Extraction and Accurate Classification of Viral Sequences. |
| 000411 (2019) |
Benjamin Linard [France] ; Krister Swenson [France] ; Fabio Pardi [France] | Rapid alignment-free phylogenetic identification of metagenomic sequences. |
| 000509 (2019) |
Daniel S. Standage [États-Unis] ; C. Titus Brown [États-Unis] ; Fereydoun Hormozdiari [États-Unis] | Kevlar: A Mapping-Free Framework for Accurate Discovery of De Novo Variants |
| 000622 (2019) |
Hanbi Kim ; Minseon Park [Corée du Sud] ; Joonki Hwang ; Jin Hwa Kim ; Doo-Ryeon Chung [Corée du Sud] ; Kyu-Sung Lee [Corée du Sud] ; Minhee Kang [Corée du Sud] | Development of Label-Free Colorimetric Assay for MERS-CoV
Using Gold Nanoparticles |
| 000645 (2019) |
Hanbi Kim ; Minseon Park ; Joonki Hwang ; Jin Hwa Kim ; Doo-Ryeon Chung ; Kyu-Sung Lee ; Minhee Kang | Correction to Development of Label-Free Colorimetric Assay for MERS-CoV Using Gold Nanoparticles. |
| 000705 (2019) |
Wentian Li [États-Unis] ; Jerome Freudenberg [États-Unis] ; Jan Freudenberg [États-Unis] | Alignment-free approaches for predicting novel Nuclear Mitochondrial Segments (NUMTs) in the human genome. |
| 000833 (2018) |
Philippos Aris Papathanos ; Nikolai Windbichler | Redkmer: An Assembly-Free Pipeline for the Identification of Abundant and Specific X-Chromosome Target Sequences for X-Shredding by CRISPR Endonucleases |
| 000862 (2018) |
Raúl Martin Amado Cattáneo [Argentine] ; Luis Diambra [Argentine] ; Andrés Norman Mccarthy [Argentine] | Phylogenomics of tomato chloroplasts using assembly and alignment-free method. |
| 000A37 (2018) |
Han Li [États-Unis] ; Fengzhu Sun [États-Unis, République populaire de Chine] | Comparative studies of alignment, alignment-free and SVM based approaches for predicting the hosts of viruses based on viral sequences |
| 000B23 (2017) |
Qian Zhang [États-Unis] ; Se-Ran Jun [États-Unis] ; Michael Leuze [États-Unis] ; David Ussery [États-Unis] ; Intawat Nookaew [États-Unis] | Viral Phylogenomics Using an Alignment-Free Method: A Three-Step Approach to Determine Optimal Length of k-mer |
| 000B29 (2017) |
Dirk D. Dolle [Royaume-Uni] ; Zhicheng Liu [Royaume-Uni] ; Matthew Cotten [Royaume-Uni] ; Jared T. Simpson [Canada] ; Zamin Iqbal [Royaume-Uni] ; Richard Durbin [Royaume-Uni] ; Shane A. Mccarthy [Royaume-Uni] ; Thomas M. Keane [Royaume-Uni] | Using reference-free compressed data structures to analyze sequencing reads from thousands of human genomes. |
| 000D85 (2017) |
Fanny-Dhelia Pajuste [Estonie] ; Lauris Kaplinski [Estonie] ; M Rt Möls [Estonie] ; Tarmo Puurand [Estonie] ; Maarja Lepamets [Estonie] ; Maido Remm [Estonie] | FastGT: an alignment-free method for calling common SNVs directly from raw sequencing reads |
| 000E63 (2017) |
You Li [États-Unis, République populaire de Chine] ; Tayla B. Heavican [États-Unis] ; Neetha N. Vellichirammal [États-Unis] ; Javeed Iqbal [États-Unis] ; Chittibabu Guda [États-Unis] | ChimeRScope: a novel alignment-free algorithm for fusion transcript prediction using paired-end RNA-Seq data |
| 000E80 (2017) |
Laurent Noé | Best hits of 11110110111: model-free selection and parameter-free sensitivity calculation of spaced seeds |
| 000E95 (2017) |
Guillaume Bernard [Australie] ; Cheong Xin Chan [Australie] ; Yao-Ban Chan [Australie] ; Xin-Yi Chua [Australie] ; Yingnan Cong [Australie] ; James M. Hogan [Australie] ; Stefan R. Maetschke [Australie] ; Mark A. Ragan [Australie] | Alignment-free inference of hierarchical and reticulate phylogenomic relationships |
| 000F13 (2017) |
Sabrina Weiss [Allemagne] ; Piotr Wojtek Dabrowski [Allemagne] ; Andreas Kurth [Allemagne] ; Siv Aina J. Leendertz [Allemagne] ; Fabian H. Leendertz [Allemagne] | A novel Coltivirus-related virus isolated from free-tailed bats from Côte d’Ivoire is able to infect human cells in vitro |
| 001302 (2016) |
Yutaro Yamaoka [Japon] ; Shutoku Matsuyama [Japon] ; Shuetsu Fukushi [Japon] ; Satoko Matsunaga [Japon] ; Yuki Matsushima [Japon] ; Hiroyuki Kuroyama [Japon] ; Hirokazu Kimura [Japon] ; Makoto Takeda [Japon] ; Tomoyuki Chimuro [Japon] ; Akihide Ryo [Japon] | Development of Monoclonal Antibody and Diagnostic Test for Middle East Respiratory Syndrome Coronavirus Using Cell-Free Synthesized Nucleocapsid Antigen |
| 001358 (2016) |
Guillaume Holley [Allemagne] ; Roland Wittler [Allemagne] ; Jens Stoye [Allemagne] | Bloom Filter Trie: an alignment-free and reference-free data structure for pan-genome storage |
| 001380 (2016) |
Bonhan Koo [Corée du Sud] ; Choong Eun Jin [Corée du Sud] ; Tae Yoon Lee [Corée du Sud] ; Jeong Hoon Lee [Corée du Sud] ; Mi Kyoung Park [Singapour] ; Heungsup Sung [Corée du Sud] ; Se Yoon Park [Corée du Sud] ; Hyun Jung Lee [Corée du Sud] ; Sun Mi Kim [Corée du Sud] ; Ji Yeun Kim [Corée du Sud] ; Sung-Han Kim [Corée du Sud] ; Yong Shin [Corée du Sud] | An isothermal, label-free, and rapid one-step RNA amplification/detection assay for diagnosis of respiratory viral infections |
| 001402 (2016) |
Yingnan Cong [Australie] ; Yao-Ban Chan [Australie] ; Mark A. Ragan [Australie] | A novel alignment-free method for detection of lateral genetic transfer based on TF-IDF |
| 001411 (2016) |
Armen Abnousi [États-Unis] ; Shira L. Broschat [États-Unis] ; Ananth Kalyanaraman [États-Unis] | A Fast Alignment-Free Approach for De Novo Detection of Protein Conserved Regions |
| 001726 (2015) |
Emanuel Weitschek [Italie] ; Fabio Cunial [Finlande] ; Giovanni Felici [Italie] | LAF: Logic Alignment Free and its application to bacterial genomes classification |
| 001861 (2015) |
Matteo Comin [Italie] ; Andrea Leoni [Italie] ; Michele Schimd [Italie] | Clustering of reads with alignment-free measures and quality values |
| 001A26 (2014) |
Pandurang Kolekar [Inde] ; Nilesh Hake [Inde] ; Mohan Kale [Inde] ; Urmila Kulkarni-Kale [Inde] | WNV Typer: a server for genotyping of West Nile viruses using an alignment-free method based on a return time distribution. |
| 001B32 (2014) |
Emanuel Weitschek [Italie] ; Daniele Santoni [Italie] ; Giulia Fiscon [Italie] ; Maria Cristina De Cola [Italie] ; Paola Bertolazzi [Italie] ; Giovanni Felici [Italie] | Next generation sequencing reads comparison with an alignment-free distance |
| 002063 (2013) |
Sebastian Maurer-Stroh [Singapour] ; Vithiagaran Gunalan ; Wing-Cheong Wong ; Frank Eisenhaber | A simple shortcut to unsupervised alignment-free phylogenetic genome groupings, even from unassembled sequencing reads. |
| 002279 (2012) |
Pandurang Kolekar [Inde] ; Mohan Kale ; Urmila Kulkarni-Kale | Alignment-free distance measure based on return time distribution for sequence analysis: applications to clustering, molecular phylogeny and subtyping. |
| 002358 (2012) |
Marina Cretich [Italie] ; Margo R. Monroe [États-Unis] ; Alex Reddington [États-Unis] ; Xirui Zhang [États-Unis] ; George G. Daaboul [États-Unis] ; Francesco Damin [Italie] ; Laura Sola [Italie] ; M. Selim Unlu [États-Unis] ; Marcella Chiari [Italie] | Interferometric silicon biochips for label and label‐free DNA and protein microarrays |
| 002486 (2011) |
Guillaume Marçais [États-Unis] ; Carl Kingsford | A fast, lock-free approach for efficient parallel counting of occurrences of k-mers. |
| 002601 (2010) |
Se-Ran Jun [États-Unis] ; Gregory E. Sims ; Guohong A. Wu ; Sung-Hou Kim | Whole-proteome phylogeny of prokaryotes by feature frequency profiles: An alignment-free method with optimal feature resolution. |
| 002615 (2010) |
Jan Schröder [Australie] ; James Bailey [Australie] ; Thomas Conway [Australie] ; Justin Zobel [Australie] | Reference-Free Validation of Short Read Data |
| 002816 (2009) |
Gregory E. Sims [États-Unis] ; Se-Ran Jun ; Guohong A. Wu ; Sung-Hou Kim | Alignment-free genome comparison with feature frequency profiles (FFP) and optimal resolutions. |
| 002820 (2009) |
Zehra Banu Bah I ; Aligül Büyükaksoy ; Sinan Mert Ölmezcan ; Fethi Im Ek ; Muhammed Hasan Aslan ; Ahmet Yavuz Oral | A Novel Label-Free Optical Biosensor Using Synthetic Oligonucleotides from E. coli O157:H7: Elementary Sensitivity Tests |
| 002878 (2009) |
Abraham J. Qavi [États-Unis] ; Adam L. Washburn [États-Unis] ; Ji-Yeon Byeon [États-Unis] ; Ryan C. Bailey [États-Unis] | Label-free technologies for quantitative multiparameter biological analysis |
| 002972 (2008) |
Patrick Furbert [États-Unis] ; Caiyan Lu ; Nicholas Winograd ; Lisa Delouise | Label-free optical detection of peptide synthesis on a porous silicon scaffold/sensor. |
| 002C83 (2006) |
Howard B. Gamper [États-Unis] ; Khalil Arar ; Alan Gewirtz ; Ya-Ming Hou | Unrestricted hybridization of oligonucleotides to structure-free DNA. |
| 002D09 (2006) |
Michelle G. Botelho [Brésil] ; Alex W M. Rietveld ; Sérgio T. Ferreira | Long-lived conformational isomerism of protein dimers: the role of the free energy of subunit association. |
| 002D16 (2006) |
Irina A. Shkel [États-Unis] ; Jeff D. Ballin ; M Thomas Record | Interactions of cationic ligands and proteins with small nucleic acids: analytic treatment of the large coulombic end effect on binding free energy as a function of salt concentration. |
| 002E54 (2006) |
Emmanuelle Godefroy [États-Unis] ; Yu Wang [États-Unis] ; Naira E. Souleimanian [États-Unis] ; Luigi Scotto [États-Unis] ; Stefan Stevanovic [Allemagne] ; Yao-Tseng Chen [États-Unis] ; Danila Valmori [États-Unis] ; Maha Ayyoub [États-Unis] | Assessment of CD4+ T cells specific for the tumor antigen SSX-1 in cancer-free individuals |
| 003307 (2002) |
Earle Stellwagen [États-Unis] ; Nancy C. Stellwagen | The free solution mobility of DNA in Tris-acetate-EDTA buffers of different concentrations, with and without added NaCl. |
| 003334 (2002) |
Earle Stellwagen [États-Unis] ; Nancy C. Stellwagen | Determining the electrophoretic mobility and translational diffusion coefficients of DNA molecules in free solution. |
| 003381 (2002) |
Heide Götz [États-Unis] ; Eva Harth [États-Unis] ; Stefan M. Schiller [Allemagne] ; Curtis W. Frank [États-Unis] ; Wolfgang Knoll [États-Unis, Allemagne] ; Craig J. Hawker [États-Unis] | Synthesis of lipo‐glycopolymer amphiphiles by nitroxide‐mediated living free‐radical polymerization |
| 003626 (2000) |
H. Cottet [France] ; P. Gareil | From small charged molecules to oligomers: a semiempirical approach to the modeling of actual mobility in free solution. |
| 003925 (1999) |
Kohji Ohno [Japon] ; Yasumasa Izu [Japon] ; Shinpei Yamamoto [Japon] ; Takeaki Miyamoto [Japon] ; Takeshi Fukuda [Japon] | Nitroxide‐controlled free radical polymerization of a sugar‐carrying acryloyl monomer |
| 003A22 (1998) |
M S Chung [États-Unis] ; A F Neuwald ; W J Wilbur | A free energy analysis by unfolding applied to 125-mers on a cubic lattice. |
| 003B70 (1998) |
Yoshihiro Sakoda [Japon] ; Akio Fukusho [Japon] | Establishment and characterization of a porcine kidney cell line, FS-L3, which forms unique multicellular domes in serum-free culture |
| 003C10 (1997) |
M. Perego [Italie] ; C. Gelfi ; A V Stoyanov ; P G Righetti | Separation of oligonucleotides of identical size, but different base composition, by free zone capillary electrophoresis in strongly acidic, isoelectric buffers. |
| 004514 (1993) |
A R Thierry ; A. Rahman ; A. Dritschilo | Overcoming multidrug resistance in human tumor cells using free and liposomally encapsulated antisense oligodeoxynucleotides. |
| 004B93 (1988) |
L J Maher ; B J Dolnick | Comparative hybrid arrest by tandem antisense oligodeoxyribonucleotides or oligodeoxyribonucleoside methylphosphonates in a cell-free system. |
| 004E75 (1983) |
M. Gupta ; N G Carr | Isolation of polysomes from Nostoc sp. MAC and translation of messenger RNA in a heterologous cell-free system. |
| 004E93 (1983) |
P. Bruneau [France] ; B. Blondel [France] ; R. Crainic [France] ; F. Horodniceanu [France] ; M. Girard [France] | Poliovirus type 1 capsid polypeptides: Absence of a free form in the cytoplasm of infected HeLa cells |
