Evolutionary Dynamics of MERS-CoV: Potential Recombination, Positive Selection and Transmission
Identifieur interne : 001265 ( Main/Exploration ); précédent : 001264; suivant : 001266Evolutionary Dynamics of MERS-CoV: Potential Recombination, Positive Selection and Transmission
Auteurs : Zhao Zhang [République populaire de Chine] ; Libing Shen [République populaire de Chine] ; Xun Gu [République populaire de Chine, États-Unis]Source :
- Scientific Reports [ 2045-2322 ] ; 2016.
Descripteurs français
- KwdFr :
- Animaux, Biologie informatique, Coronavirus du syndrome respiratoire du Moyen-Orient (), Coronavirus du syndrome respiratoire du Moyen-Orient (génétique), Coronavirus du syndrome respiratoire du Moyen-Orient (isolement et purification), Humains, Infections à coronavirus (médecine vétérinaire), Infections à coronavirus (transmission), Infections à coronavirus (virologie), Phylogénie, Recombinaison génétique, Sélection génétique, Variation génétique, Évolution moléculaire.
- MESH :
- génétique : Coronavirus du syndrome respiratoire du Moyen-Orient.
- isolement et purification : Coronavirus du syndrome respiratoire du Moyen-Orient.
- médecine vétérinaire : Infections à coronavirus.
- virologie : Infections à coronavirus.
- Animaux, Biologie informatique, Coronavirus du syndrome respiratoire du Moyen-Orient, Humains, Infections à coronavirus, Phylogénie, Recombinaison génétique, Sélection génétique, Variation génétique, Évolution moléculaire.
English descriptors
- KwdEn :
- Animals, Computational Biology, Coronavirus Infections (transmission), Coronavirus Infections (veterinary), Coronavirus Infections (virology), Evolution, Molecular, Genetic Variation, Humans, Middle East Respiratory Syndrome Coronavirus (classification), Middle East Respiratory Syndrome Coronavirus (genetics), Middle East Respiratory Syndrome Coronavirus (isolation & purification), Phylogeny, Recombination, Genetic, Selection, Genetic.
- MESH :
- classification : Middle East Respiratory Syndrome Coronavirus.
- genetics : Middle East Respiratory Syndrome Coronavirus.
- isolation & purification : Middle East Respiratory Syndrome Coronavirus.
- transmission : Coronavirus Infections.
- veterinary : Coronavirus Infections.
- virology : Coronavirus Infections.
- Animals, Computational Biology, Evolution, Molecular, Genetic Variation, Humans, Phylogeny, Recombination, Genetic, Selection, Genetic.
Abstract
Middle East respiratory syndrome coronavirus (MERS-CoV) belongs to beta group of coronavirus and was first discovered in 2012. MERS-CoV can infect multiple host species and cause severe diseases in human. We conducted a series of phylogenetic and bioinformatic analyses to study the evolution dynamics of MERS-CoV among different host species with genomic data. Our analyses show: 1) 28 potential recombinant sequences were detected and they can be classified into seven potential recombinant types; 2) The spike (S) protein of MERS-CoV was under strong positive selection when MERS-CoV transmitted from their natural host to human; 3) Six out of nine positive selection sites detected in spike (S) protein are located in its receptor-binding domain which is in direct contact with host cells; 4) MERS-CoV frequently transmitted back and forth between human and camel after it had acquired the human-camel infection capability. Together, these results suggest that potential recombination events might have happened frequently during MERS-CoV’s evolutionary history and the positive selection sites in MERS-CoV’s S protein might enable it to infect human.
The online version of this article (doi:10.1038/srep25049) contains supplementary material, which is available to authorized users.
Url:
DOI: 10.1038/srep25049
PubMed: 27142087
PubMed Central: 4855236
Affiliations:
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xml:lang="en"><term>Animals</term><term>Computational Biology</term><term>Evolution, Molecular</term><term>Genetic Variation</term><term>Humans</term><term>Phylogeny</term><term>Recombination, Genetic</term><term>Selection, Genetic</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Animaux</term><term>Biologie informatique</term><term>Coronavirus du syndrome respiratoire du Moyen-Orient</term><term>Humains</term><term>Infections à coronavirus</term><term>Phylogénie</term><term>Recombinaison génétique</term><term>Sélection génétique</term><term>Variation génétique</term><term>Évolution moléculaire</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p id="Par1">Middle East respiratory syndrome coronavirus (MERS-CoV) belongs to beta group of coronavirus and was first discovered in 2012. MERS-CoV can infect multiple host species and cause severe diseases in human. We conducted a series of phylogenetic and bioinformatic analyses to study the evolution dynamics of MERS-CoV among different host species with genomic data. Our analyses show: 1) 28 potential recombinant sequences were detected and they can be classified into seven potential recombinant types; 2) The spike (S) protein of MERS-CoV was under strong positive selection when MERS-CoV transmitted from their natural host to human; 3) Six out of nine positive selection sites detected in spike (S) protein are located in its receptor-binding domain which is in direct contact with host cells; 4) MERS-CoV frequently transmitted back and forth between human and camel after it had acquired the human-camel infection capability. Together, these results suggest that potential recombination events might have happened frequently during MERS-CoV’s evolutionary history and the positive selection sites in MERS-CoV’s S protein might enable it to infect human.</p><sec><title>Supplementary information</title><p>The online version of this article (doi:10.1038/srep25049) contains supplementary material, which is available to authorized users.</p></sec></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="De Groot, Rj" uniqKey="De Groot R">RJ de Groot</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Muller, Ma" uniqKey="Muller M">MA Muller</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Meyer, B" uniqKey="Meyer B">B Meyer</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Hemida, Mg" uniqKey="Hemida M">MG 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Chine</li><li>États-Unis</li></country><region><li>Iowa</li></region></list><tree><country name="République populaire de Chine"><noRegion><name sortKey="Zhang, Zhao" sort="Zhang, Zhao" uniqKey="Zhang Z" first="Zhao" last="Zhang">Zhao Zhang</name></noRegion><name sortKey="Gu, Xun" sort="Gu, Xun" uniqKey="Gu X" first="Xun" last="Gu">Xun Gu</name><name sortKey="Shen, Libing" sort="Shen, Libing" uniqKey="Shen L" first="Libing" last="Shen">Libing Shen</name></country><country name="États-Unis"><region name="Iowa"><name sortKey="Gu, Xun" sort="Gu, Xun" uniqKey="Gu X" first="Xun" last="Gu">Xun Gu</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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