Genetic Characteristics of Coronaviruses from Korean Bats in 2016
Identifieur interne : 000D77 ( Main/Exploration ); précédent : 000D76; suivant : 000D78Genetic Characteristics of Coronaviruses from Korean Bats in 2016
Auteurs : Saemi Lee [Corée du Sud] ; Seong-Deok Jo [Corée du Sud] ; Kidong Son [Corée du Sud] ; Injung An [Corée du Sud] ; Jipseol Jeong [Corée du Sud] ; Seung-Jun Wang [Corée du Sud] ; Yongkwan Kim [Corée du Sud] ; Weonhwa Jheong [Corée du Sud] ; Jae-Ku Oem [Corée du Sud]Source :
- Microbial Ecology [ 0095-3628 ] ; 2017.
Descripteurs français
- KwdFr :
- MESH :
- génétique : Coronavirus.
- isolement et purification : Coronavirus.
- médecine vétérinaire : Infections à coronavirus.
- virologie : Chiroptera, Infections à coronavirus.
- Animaux, Chine, Coronavirus, Génome viral, Hong Kong, Humains, Phylogénie, République de Corée, Variation génétique.
- Wicri :
- geographic : République populaire de Chine, Hong Kong.
English descriptors
- KwdEn :
- MESH :
- geographic : China, Hong Kong, Republic of Korea.
- classification : Coronavirus.
- genetics : Coronavirus.
- isolation & purification : Coronavirus.
- veterinary : Coronavirus Infections.
- virology : Chiroptera, Coronavirus Infections.
- Animals, Genetic Variation, Genome, Viral, Humans, Phylogeny.
Abstract
Bats have increasingly been recognized as the natural reservoir of severe acute respiratory syndrome (SARS), coronavirus, and other coronaviruses found in mammals. However, little research has been conducted on bat coronaviruses in South Korea. In this study, bat samples (332 oral swabs, 245 fecal samples, 38 urine samples, and 57 bat carcasses) were collected at 33 natural bat habitat sites in South Korea. RT-PCR and sequencing were performed for specific coronavirus genes to identify the bat coronaviruses in different bat samples. Coronaviruses were detected in 2.7% (18/672) of the samples: 13 oral swabs from one species of the family
Url:
DOI: 10.1007/s00248-017-1033-8
PubMed: 28725945
PubMed Central: 7079938
Affiliations:
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Incheon</wicri:regionArea><wicri:noRegion>Incheon</wicri:noRegion></affiliation></author><author><name sortKey="Jo, Seong Deok" sort="Jo, Seong Deok" uniqKey="Jo S" first="Seong-Deok" last="Jo">Seong-Deok Jo</name><affiliation wicri:level="1"><nlm:aff id="Aff1"><institution-wrap><institution-id institution-id-type="ISNI">0000 0004 0647 9913</institution-id><institution-id institution-id-type="GRID">grid.419585.4</institution-id><institution>Environmental Health Research Department,</institution><institution>National Institute of Environmental Research,</institution></institution-wrap>Hwangyeong-ro 42, Seo-gu, Incheon, 22689 Republic of Korea</nlm:aff><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Hwangyeong-ro 42, Seo-gu, Incheon</wicri:regionArea><wicri:noRegion>Incheon</wicri:noRegion></affiliation></author><author><name sortKey="Son, Kidong" sort="Son, Kidong" uniqKey="Son K" first="Kidong" last="Son">Kidong Son</name><affiliation wicri:level="1"><nlm:aff 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Sud</country><wicri:regionArea>Hwangyeong-ro 42, Seo-gu, Incheon</wicri:regionArea><wicri:noRegion>Incheon</wicri:noRegion></affiliation></author><author><name sortKey="Wang, Seung Jun" sort="Wang, Seung Jun" uniqKey="Wang S" first="Seung-Jun" last="Wang">Seung-Jun Wang</name><affiliation wicri:level="1"><nlm:aff id="Aff1"><institution-wrap><institution-id institution-id-type="ISNI">0000 0004 0647 9913</institution-id><institution-id institution-id-type="GRID">grid.419585.4</institution-id><institution>Environmental Health Research Department,</institution><institution>National Institute of Environmental Research,</institution></institution-wrap>Hwangyeong-ro 42, Seo-gu, Incheon, 22689 Republic of Korea</nlm:aff><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Hwangyeong-ro 42, Seo-gu, Incheon</wicri:regionArea><wicri:noRegion>Incheon</wicri:noRegion></affiliation></author><author><name sortKey="Kim, Yongkwan" sort="Kim, Yongkwan" uniqKey="Kim Y" first="Yongkwan" last="Kim">Yongkwan Kim</name><affiliation wicri:level="1"><nlm:aff id="Aff1"><institution-wrap><institution-id institution-id-type="ISNI">0000 0004 0647 9913</institution-id><institution-id institution-id-type="GRID">grid.419585.4</institution-id><institution>Environmental Health Research Department,</institution><institution>National Institute of Environmental Research,</institution></institution-wrap>Hwangyeong-ro 42, Seo-gu, Incheon, 22689 Republic of Korea</nlm:aff><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Hwangyeong-ro 42, Seo-gu, Incheon</wicri:regionArea><wicri:noRegion>Incheon</wicri:noRegion></affiliation></author><author><name sortKey="Jheong, Weonhwa" sort="Jheong, Weonhwa" uniqKey="Jheong W" first="Weonhwa" last="Jheong">Weonhwa Jheong</name><affiliation wicri:level="1"><nlm:aff id="Aff1"><institution-wrap><institution-id institution-id-type="ISNI">0000 0004 0647 9913</institution-id><institution-id institution-id-type="GRID">grid.419585.4</institution-id><institution>Environmental Health Research Department,</institution><institution>National Institute of Environmental Research,</institution></institution-wrap>Hwangyeong-ro 42, Seo-gu, Incheon, 22689 Republic of Korea</nlm:aff><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Hwangyeong-ro 42, Seo-gu, Incheon</wicri:regionArea><wicri:noRegion>Incheon</wicri:noRegion></affiliation></author><author><name sortKey="Oem, Jae Ku" sort="Oem, Jae Ku" uniqKey="Oem J" first="Jae-Ku" last="Oem">Jae-Ku Oem</name><affiliation wicri:level="1"><nlm:aff id="Aff1"><institution-wrap><institution-id institution-id-type="ISNI">0000 0004 0647 9913</institution-id><institution-id institution-id-type="GRID">grid.419585.4</institution-id><institution>Environmental Health Research Department,</institution><institution>National Institute of Environmental Research,</institution></institution-wrap>Hwangyeong-ro 42, Seo-gu, Incheon, 22689 Republic of Korea</nlm:aff><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Hwangyeong-ro 42, Seo-gu, Incheon</wicri:regionArea><wicri:noRegion>Incheon</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="Aff2"><institution-wrap><institution-id institution-id-type="ISNI">0000 0004 0470 4320</institution-id><institution-id institution-id-type="GRID">grid.411545.0</institution-id><institution>Department of Veterinary Infectious Diseases, College of Veterinary Medicine,</institution><institution>Chonbuk National University,</institution></institution-wrap>Iksan, Republic of Korea</nlm:aff><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Iksan</wicri:regionArea></affiliation></author></analytic><series><title level="j">Microbial Ecology</title><idno type="ISSN">0095-3628</idno><idno type="eISSN">1432-184X</idno><imprint><date when="2017">2017</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Animals</term><term>China</term><term>Chiroptera (virology)</term><term>Coronavirus (classification)</term><term>Coronavirus (genetics)</term><term>Coronavirus (isolation & purification)</term><term>Coronavirus Infections (veterinary)</term><term>Coronavirus Infections (virology)</term><term>Genetic Variation</term><term>Genome, Viral</term><term>Hong Kong</term><term>Humans</term><term>Phylogeny</term><term>Republic of Korea</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Animaux</term><term>Chine</term><term>Chiroptera (virologie)</term><term>Coronavirus ()</term><term>Coronavirus (génétique)</term><term>Coronavirus (isolement et purification)</term><term>Génome viral</term><term>Hong Kong</term><term>Humains</term><term>Infections à coronavirus (médecine vétérinaire)</term><term>Infections à coronavirus (virologie)</term><term>Phylogénie</term><term>République de Corée</term><term>Variation génétique</term></keywords><keywords scheme="MESH" type="geographic" xml:lang="en"><term>China</term><term>Hong Kong</term><term>Republic of Korea</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Coronavirus</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Coronavirus</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Coronavirus</term></keywords><keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Coronavirus</term></keywords><keywords scheme="MESH" qualifier="isolement et purification" xml:lang="fr"><term>Coronavirus</term></keywords><keywords scheme="MESH" qualifier="médecine vétérinaire" xml:lang="fr"><term>Infections à coronavirus</term></keywords><keywords scheme="MESH" qualifier="veterinary" xml:lang="en"><term>Coronavirus Infections</term></keywords><keywords scheme="MESH" qualifier="virologie" xml:lang="fr"><term>Chiroptera</term><term>Infections à coronavirus</term></keywords><keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Chiroptera</term><term>Coronavirus Infections</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Animals</term><term>Genetic Variation</term><term>Genome, Viral</term><term>Humans</term><term>Phylogeny</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Animaux</term><term>Chine</term><term>Coronavirus</term><term>Génome viral</term><term>Hong Kong</term><term>Humains</term><term>Phylogénie</term><term>République de Corée</term><term>Variation génétique</term></keywords><keywords scheme="Wicri" type="geographic" xml:lang="fr"><term>République populaire de Chine</term><term>Hong Kong</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p id="Par1">Bats have increasingly been recognized as the natural reservoir of severe acute respiratory syndrome (SARS), coronavirus, and other coronaviruses found in mammals. However, little research has been conducted on bat coronaviruses in South Korea. In this study, bat samples (332 oral swabs, 245 fecal samples, 38 urine samples, and 57 bat carcasses) were collected at 33 natural bat habitat sites in South Korea. RT-PCR and sequencing were performed for specific coronavirus genes to identify the bat coronaviruses in different bat samples. Coronaviruses were detected in 2.7% (18/672) of the samples: 13 oral swabs from one species of the family <italic>Rhinolophidae</italic>, and four fecal samples and one carcass (intestine) from three species of the family <italic>Vespertiliodae</italic>. To determine the genetic relationships of the 18 sequences obtained in this study and previously known coronaviruses, the nucleotide sequences of a 392-nt region of the RNA-dependent RNA polymerase (RdRp) gene were analyzed phylogenetically. Thirteen sequences belonging to SARS-like betacoronaviruses showed the highest nucleotide identity (97.1–99.7%) with Bat-CoV-JTMC15 reported in China. The other five sequences were most similar to MERS-like betacoronaviruses. Four nucleotide sequences displayed the highest identity (94.1–95.1%) with Bat-CoV-HKU5 from Hong Kong. The one sequence from a carcass showed the highest nucleotide identity (99%) with Bat-CoV-SC2013 from China. These results suggest that careful surveillance of coronaviruses from bats should be continued, because animal and human infections may result from the genetic variants present in bat coronavirus reservoirs.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Brian, Da" uniqKey="Brian D">DA Brian</name></author><author><name sortKey="Baric, Rs" uniqKey="Baric R">RS Baric</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Gonzalez, J" uniqKey="Gonzalez J">J Gonzalez</name></author><author><name sortKey="Gomez Puertas, P" uniqKey="Gomez Puertas P">P Gomez-Puertas</name></author><author><name sortKey="Cavanagh, D" uniqKey="Cavanagh D">D Cavanagh</name></author><author><name sortKey="Gorbalenya, A" uniqKey="Gorbalenya A">A Gorbalenya</name></author><author><name sortKey="Enjuanes, L" uniqKey="Enjuanes L">L Enjuanes</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Murray, 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Ku" sort="Oem, Jae Ku" uniqKey="Oem J" first="Jae-Ku" last="Oem">Jae-Ku Oem</name><name sortKey="Oem, Jae Ku" sort="Oem, Jae Ku" uniqKey="Oem J" first="Jae-Ku" last="Oem">Jae-Ku Oem</name><name sortKey="Son, Kidong" sort="Son, Kidong" uniqKey="Son K" first="Kidong" last="Son">Kidong Son</name><name sortKey="Wang, Seung Jun" sort="Wang, Seung Jun" uniqKey="Wang S" first="Seung-Jun" last="Wang">Seung-Jun Wang</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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