MersV1, PubMed, Checkpoint, bibRecord, 000907

Genetic Characteristics of Coronaviruses from Korean Bats in 2016.

Identifieur interne : 000907 ( PubMed/Checkpoint ); précédent : 000906; suivant : 000908

Genetic Characteristics of Coronaviruses from Korean Bats in 2016.

Auteurs : Saemi Lee [Corée du Sud] ; Seong-Deok Jo [Corée du Sud] ; Kidong Son [Corée du Sud] ; Injung An [Corée du Sud] ; Jipseol Jeong [Corée du Sud] ; Seung-Jun Wang [Corée du Sud] ; Yongkwan Kim [Corée du Sud] ; Weonhwa Jheong [Corée du Sud] ; Jae-Ku Oem [Corée du Sud]

Source :

Microbial ecology [ 1432-184X ] ; 2018.

RBID : pubmed:28725945

Descripteurs français

KwdFr :
- Animaux, Chine, Chiroptera (virologie), Coronavirus (), Coronavirus (génétique), Coronavirus (isolement et purification), Génome viral, Hong Kong, Humains, Infections à coronavirus (médecine vétérinaire), Infections à coronavirus (virologie), Phylogénie, République de Corée, Variation génétique.
MESH :
- génétique : Coronavirus.
- isolement et purification : Coronavirus.
- médecine vétérinaire : Infections à coronavirus.
- virologie : Chiroptera, Infections à coronavirus.
- Animaux, Chine, Coronavirus, Génome viral, Hong Kong, Humains, Phylogénie, République de Corée, Variation génétique.
Wicri :
- geographic : République populaire de Chine, Hong Kong.

English descriptors

KwdEn :
- Animals, China, Chiroptera (virology), Coronavirus (classification), Coronavirus (genetics), Coronavirus (isolation & purification), Coronavirus Infections (veterinary), Coronavirus Infections (virology), Genetic Variation, Genome, Viral, Hong Kong, Humans, Phylogeny, Republic of Korea.
MESH :
- geographic : China, Hong Kong, Republic of Korea.
- classification : Coronavirus.
- genetics : Coronavirus.
- isolation & purification : Coronavirus.
- veterinary : Coronavirus Infections.
- virology : Chiroptera, Coronavirus Infections.
- Animals, Genetic Variation, Genome, Viral, Humans, Phylogeny.

Abstract

Bats have increasingly been recognized as the natural reservoir of severe acute respiratory syndrome (SARS), coronavirus, and other coronaviruses found in mammals. However, little research has been conducted on bat coronaviruses in South Korea. In this study, bat samples (332 oral swabs, 245 fecal samples, 38 urine samples, and 57 bat carcasses) were collected at 33 natural bat habitat sites in South Korea. RT-PCR and sequencing were performed for specific coronavirus genes to identify the bat coronaviruses in different bat samples. Coronaviruses were detected in 2.7% (18/672) of the samples: 13 oral swabs from one species of the family Rhinolophidae, and four fecal samples and one carcass (intestine) from three species of the family Vespertiliodae. To determine the genetic relationships of the 18 sequences obtained in this study and previously known coronaviruses, the nucleotide sequences of a 392-nt region of the RNA-dependent RNA polymerase (RdRp) gene were analyzed phylogenetically. Thirteen sequences belonging to SARS-like betacoronaviruses showed the highest nucleotide identity (97.1-99.7%) with Bat-CoV-JTMC15 reported in China. The other five sequences were most similar to MERS-like betacoronaviruses. Four nucleotide sequences displayed the highest identity (94.1-95.1%) with Bat-CoV-HKU5 from Hong Kong. The one sequence from a carcass showed the highest nucleotide identity (99%) with Bat-CoV-SC2013 from China. These results suggest that careful surveillance of coronaviruses from bats should be continued, because animal and human infections may result from the genetic variants present in bat coronavirus reservoirs.

DOI: 10.1007/s00248-017-1033-8
PubMed: 28725945

Affiliations:

Corée du Sud

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Le document en format XML

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<front><div type="abstract" xml:lang="en">Bats have increasingly been recognized as the natural reservoir of severe acute respiratory syndrome (SARS), coronavirus, and other coronaviruses found in mammals. However, little research has been conducted on bat coronaviruses in South Korea. In this study, bat samples (332 oral swabs, 245 fecal samples, 38 urine samples, and 57 bat carcasses) were collected at 33 natural bat habitat sites in South Korea. RT-PCR and sequencing were performed for specific coronavirus genes to identify the bat coronaviruses in different bat samples. Coronaviruses were detected in 2.7% (18/672) of the samples: 13 oral swabs from one species of the family Rhinolophidae, and four fecal samples and one carcass (intestine) from three species of the family Vespertiliodae. To determine the genetic relationships of the 18 sequences obtained in this study and previously known coronaviruses, the nucleotide sequences of a 392-nt region of the RNA-dependent RNA polymerase (RdRp) gene were analyzed phylogenetically. Thirteen sequences belonging to SARS-like betacoronaviruses showed the highest nucleotide identity (97.1-99.7%) with Bat-CoV-JTMC15 reported in China. The other five sequences were most similar to MERS-like betacoronaviruses. Four nucleotide sequences displayed the highest identity (94.1-95.1%) with Bat-CoV-HKU5 from Hong Kong. The one sequence from a carcass showed the highest nucleotide identity (99%) with Bat-CoV-SC2013 from China. These results suggest that careful surveillance of coronaviruses from bats should be continued, because animal and human infections may result from the genetic variants present in bat coronavirus reservoirs.</div>
</front>
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<DateCompleted><Year>2019</Year>
<Month>01</Month>
<Day>16</Day>
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<DateRevised><Year>2020</Year>
<Month>03</Month>
<Day>24</Day>
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<JournalIssue CitedMedium="Internet"><Volume>75</Volume>
<Issue>1</Issue>
<PubDate><Year>2018</Year>
<Month>Jan</Month>
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<Title>Microbial ecology</Title>
<ISOAbbreviation>Microb. Ecol.</ISOAbbreviation>
</Journal>
<ArticleTitle>Genetic Characteristics of Coronaviruses from Korean Bats in 2016.</ArticleTitle>
<Pagination><MedlinePgn>174-182</MedlinePgn>
</Pagination>
<ELocationID EIdType="doi" ValidYN="Y">10.1007/s00248-017-1033-8</ELocationID>
<Abstract><AbstractText>Bats have increasingly been recognized as the natural reservoir of severe acute respiratory syndrome (SARS), coronavirus, and other coronaviruses found in mammals. However, little research has been conducted on bat coronaviruses in South Korea. In this study, bat samples (332 oral swabs, 245 fecal samples, 38 urine samples, and 57 bat carcasses) were collected at 33 natural bat habitat sites in South Korea. RT-PCR and sequencing were performed for specific coronavirus genes to identify the bat coronaviruses in different bat samples. Coronaviruses were detected in 2.7% (18/672) of the samples: 13 oral swabs from one species of the family Rhinolophidae, and four fecal samples and one carcass (intestine) from three species of the family Vespertiliodae. To determine the genetic relationships of the 18 sequences obtained in this study and previously known coronaviruses, the nucleotide sequences of a 392-nt region of the RNA-dependent RNA polymerase (RdRp) gene were analyzed phylogenetically. Thirteen sequences belonging to SARS-like betacoronaviruses showed the highest nucleotide identity (97.1-99.7%) with Bat-CoV-JTMC15 reported in China. The other five sequences were most similar to MERS-like betacoronaviruses. Four nucleotide sequences displayed the highest identity (94.1-95.1%) with Bat-CoV-HKU5 from Hong Kong. The one sequence from a carcass showed the highest nucleotide identity (99%) with Bat-CoV-SC2013 from China. These results suggest that careful surveillance of coronaviruses from bats should be continued, because animal and human infections may result from the genetic variants present in bat coronavirus reservoirs.</AbstractText>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Lee</LastName>
<ForeName>Saemi</ForeName>
<Initials>S</Initials>
<AffiliationInfo><Affiliation>Environmental Health Research Department, National Institute of Environmental Research, Hwangyeong-ro 42, Seo-gu, Incheon, 22689, Republic of Korea.</Affiliation>
</AffiliationInfo>
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<Author ValidYN="Y"><LastName>Jo</LastName>
<ForeName>Seong-Deok</ForeName>
<Initials>SD</Initials>
<AffiliationInfo><Affiliation>Environmental Health Research Department, National Institute of Environmental Research, Hwangyeong-ro 42, Seo-gu, Incheon, 22689, Republic of Korea.</Affiliation>
</AffiliationInfo>
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<Author ValidYN="Y"><LastName>Son</LastName>
<ForeName>Kidong</ForeName>
<Initials>K</Initials>
<AffiliationInfo><Affiliation>Environmental Health Research Department, National Institute of Environmental Research, Hwangyeong-ro 42, Seo-gu, Incheon, 22689, Republic of Korea.</Affiliation>
</AffiliationInfo>
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</AffiliationInfo>
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</AffiliationInfo>
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<Author ValidYN="Y"><LastName>Wang</LastName>
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<Initials>Y</Initials>
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</AffiliationInfo>
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<Author ValidYN="Y"><LastName>Jheong</LastName>
<ForeName>Weonhwa</ForeName>
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<AffiliationInfo><Affiliation>Environmental Health Research Department, National Institute of Environmental Research, Hwangyeong-ro 42, Seo-gu, Incheon, 22689, Republic of Korea. jku0623@korea.kr.</Affiliation>
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<AffiliationInfo><Affiliation>Department of Veterinary Infectious Diseases, College of Veterinary Medicine, Chonbuk National University, Iksan, Republic of Korea. jku0623@korea.kr.</Affiliation>
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<affiliations><list><country><li>Corée du Sud</li>
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<tree><country name="Corée du Sud"><noRegion><name sortKey="Lee, Saemi" sort="Lee, Saemi" uniqKey="Lee S" first="Saemi" last="Lee">Saemi Lee</name>
</noRegion>
<name sortKey="An, Injung" sort="An, Injung" uniqKey="An I" first="Injung" last="An">Injung An</name>
<name sortKey="Jeong, Jipseol" sort="Jeong, Jipseol" uniqKey="Jeong J" first="Jipseol" last="Jeong">Jipseol Jeong</name>
<name sortKey="Jheong, Weonhwa" sort="Jheong, Weonhwa" uniqKey="Jheong W" first="Weonhwa" last="Jheong">Weonhwa Jheong</name>
<name sortKey="Jo, Seong Deok" sort="Jo, Seong Deok" uniqKey="Jo S" first="Seong-Deok" last="Jo">Seong-Deok Jo</name>
<name sortKey="Kim, Yongkwan" sort="Kim, Yongkwan" uniqKey="Kim Y" first="Yongkwan" last="Kim">Yongkwan Kim</name>
<name sortKey="Oem, Jae Ku" sort="Oem, Jae Ku" uniqKey="Oem J" first="Jae-Ku" last="Oem">Jae-Ku Oem</name>
<name sortKey="Son, Kidong" sort="Son, Kidong" uniqKey="Son K" first="Kidong" last="Son">Kidong Son</name>
<name sortKey="Wang, Seung Jun" sort="Wang, Seung Jun" uniqKey="Wang S" first="Seung-Jun" last="Wang">Seung-Jun Wang</name>
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Genetic Characteristics of Coronaviruses from Korean Bats in 2016.

Genetic Characteristics of Coronaviruses from Korean Bats in 2016.

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