Virus Variation Resource – improved response to emergent viral outbreaks
Identifieur interne : 000F57 ( Main/Curation ); précédent : 000F56; suivant : 000F58Virus Variation Resource – improved response to emergent viral outbreaks
Auteurs : Eneida L. Hatcher ; Sergey A. Zhdanov ; Yiming Bao ; Olga Blinkova ; Eric P. Nawrocki ; Yuri Ostapchuck ; Alejandro A. Sch Ffer ; J. Rodney BristerSource :
- Nucleic Acids Research [ 0305-1048 ] ; 2016.
Descripteurs français
- KwdFr :
- MESH :
- génétique : Virus.
- virologie : Maladies virales.
- épidémiologie : Maladies virales.
- Bases de données génétiques, Biologie informatique, Flambées de maladies, Logiciel, Variation génétique.
English descriptors
- KwdEn :
- MESH :
- epidemiology : Virus Diseases.
- genetics : Viruses.
- methods : Computational Biology.
- virology : Virus Diseases.
- Databases, Genetic, Disease Outbreaks, Genetic Variation, Software.
Abstract
The Virus Variation Resource is a value-added viral sequence data resource hosted by the National Center for Biotechnology Information. The resource is located at
Url:
DOI: 10.1093/nar/gkw1065
PubMed: 27899678
PubMed Central: 5210549
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PMC:5210549Le document en format XML
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<author><name sortKey="Zhdanov, Sergey A" sort="Zhdanov, Sergey A" uniqKey="Zhdanov S" first="Sergey A." last="Zhdanov">Sergey A. Zhdanov</name>
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<author><name sortKey="Blinkova, Olga" sort="Blinkova, Olga" uniqKey="Blinkova O" first="Olga" last="Blinkova">Olga Blinkova</name>
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<author><name sortKey="Ostapchuck, Yuri" sort="Ostapchuck, Yuri" uniqKey="Ostapchuck Y" first="Yuri" last="Ostapchuck">Yuri Ostapchuck</name>
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<author><name sortKey="Sch Ffer, Alejandro A" sort="Sch Ffer, Alejandro A" uniqKey="Sch Ffer A" first="Alejandro A." last="Sch Ffer">Alejandro A. Sch Ffer</name>
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<term>Disease Outbreaks</term>
<term>Genetic Variation</term>
<term>Software</term>
<term>Virus Diseases (epidemiology)</term>
<term>Virus Diseases (virology)</term>
<term>Viruses (genetics)</term>
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<keywords scheme="KwdFr" xml:lang="fr"><term>Bases de données génétiques</term>
<term>Biologie informatique ()</term>
<term>Flambées de maladies</term>
<term>Logiciel</term>
<term>Maladies virales (virologie)</term>
<term>Maladies virales (épidémiologie)</term>
<term>Variation génétique</term>
<term>Virus (génétique)</term>
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<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Viruses</term>
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<keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Virus</term>
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<keywords scheme="MESH" qualifier="methods" xml:lang="en"><term>Computational Biology</term>
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<keywords scheme="MESH" qualifier="virologie" xml:lang="fr"><term>Maladies virales</term>
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<keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Virus Diseases</term>
</keywords>
<keywords scheme="MESH" qualifier="épidémiologie" xml:lang="fr"><term>Maladies virales</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Databases, Genetic</term>
<term>Disease Outbreaks</term>
<term>Genetic Variation</term>
<term>Software</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr"><term>Bases de données génétiques</term>
<term>Biologie informatique</term>
<term>Flambées de maladies</term>
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<front><div type="abstract" xml:lang="en"><title>Abstract</title>
<p>The Virus Variation Resource is a value-added viral sequence data resource hosted by the National Center for Biotechnology Information. The resource is located at <ext-link ext-link-type="uri" xlink:href="http://www.ncbi.nlm.nih.gov/genome/viruses/variation/">http://www.ncbi.nlm.nih.gov/genome/viruses/variation/</ext-link>
and includes modules for seven viral groups: influenza virus, <italic>Dengue virus, West Nile virus, Ebolavirus</italic>
, MERS coronavirus, <italic>Rotavirus A</italic>
and <italic>Zika virus</italic>
. Each module is supported by pipelines that scan newly released GenBank records, annotate genes and proteins and parse sample descriptors and then map them to controlled vocabulary. These processes in turn support a purpose-built search interface where users can select sequences based on standardized gene, protein and metadata terms. Once sequences are selected, a suite of tools for downloading data, multi-sequence alignment and tree building supports a variety of user directed activities. This manuscript describes a series of features and functionalities recently added to the Virus Variation Resource.</p>
</div>
</front>
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</back>
</TEI>
</record>
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