Virus Variation Resource – improved response to emergent viral outbreaks
Identifieur interne : 000958 ( Pmc/Checkpoint ); précédent : 000957; suivant : 000959Virus Variation Resource – improved response to emergent viral outbreaks
Auteurs : Eneida L. Hatcher ; Sergey A. Zhdanov ; Yiming Bao ; Olga Blinkova ; Eric P. Nawrocki ; Yuri Ostapchuck ; Alejandro A. Sch Ffer ; J. Rodney BristerSource :
- Nucleic Acids Research [ 0305-1048 ] ; 2016.
Abstract
The Virus Variation Resource is a value-added viral sequence data resource hosted by the National Center for Biotechnology Information. The resource is located at
Url:
DOI: 10.1093/nar/gkw1065
PubMed: 27899678
PubMed Central: 5210549
Affiliations:
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Virus Variation Resource – improved response to emergent viral outbreaks</title><author><name sortKey="Hatcher, Eneida L" sort="Hatcher, Eneida L" uniqKey="Hatcher E" first="Eneida L." last="Hatcher">Eneida L. Hatcher</name></author><author><name sortKey="Zhdanov, Sergey A" sort="Zhdanov, Sergey A" uniqKey="Zhdanov S" first="Sergey A." last="Zhdanov">Sergey A. Zhdanov</name></author><author><name sortKey="Bao, Yiming" sort="Bao, Yiming" uniqKey="Bao Y" first="Yiming" last="Bao">Yiming Bao</name></author><author><name sortKey="Blinkova, Olga" sort="Blinkova, Olga" uniqKey="Blinkova O" first="Olga" last="Blinkova">Olga Blinkova</name></author><author><name sortKey="Nawrocki, Eric P" sort="Nawrocki, Eric P" uniqKey="Nawrocki E" first="Eric P." last="Nawrocki">Eric P. Nawrocki</name></author><author><name sortKey="Ostapchuck, Yuri" sort="Ostapchuck, Yuri" uniqKey="Ostapchuck Y" first="Yuri" last="Ostapchuck">Yuri Ostapchuck</name></author><author><name sortKey="Sch Ffer, Alejandro A" sort="Sch Ffer, Alejandro A" uniqKey="Sch Ffer A" first="Alejandro A." last="Sch Ffer">Alejandro A. Sch Ffer</name></author><author><name sortKey="Brister, J Rodney" sort="Brister, J Rodney" uniqKey="Brister J" first="J. Rodney" last="Brister">J. Rodney Brister</name></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">27899678</idno><idno type="pmc">5210549</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5210549</idno><idno type="RBID">PMC:5210549</idno><idno type="doi">10.1093/nar/gkw1065</idno><date when="2016">2016</date><idno type="wicri:Area/Pmc/Corpus">000F57</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Corpus" wicri:corpus="PMC">000F57</idno><idno type="wicri:Area/Pmc/Curation">000F57</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Curation">000F57</idno><idno type="wicri:Area/Pmc/Checkpoint">000958</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Checkpoint">000958</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Virus Variation Resource – improved response to emergent viral outbreaks</title><author><name sortKey="Hatcher, Eneida L" sort="Hatcher, Eneida L" uniqKey="Hatcher E" first="Eneida L." last="Hatcher">Eneida L. Hatcher</name></author><author><name sortKey="Zhdanov, Sergey A" sort="Zhdanov, Sergey A" uniqKey="Zhdanov S" first="Sergey A." last="Zhdanov">Sergey A. Zhdanov</name></author><author><name sortKey="Bao, Yiming" sort="Bao, Yiming" uniqKey="Bao Y" first="Yiming" last="Bao">Yiming Bao</name></author><author><name sortKey="Blinkova, Olga" sort="Blinkova, Olga" uniqKey="Blinkova O" first="Olga" last="Blinkova">Olga Blinkova</name></author><author><name sortKey="Nawrocki, Eric P" sort="Nawrocki, Eric P" uniqKey="Nawrocki E" first="Eric P." last="Nawrocki">Eric P. Nawrocki</name></author><author><name sortKey="Ostapchuck, Yuri" sort="Ostapchuck, Yuri" uniqKey="Ostapchuck Y" first="Yuri" last="Ostapchuck">Yuri Ostapchuck</name></author><author><name sortKey="Sch Ffer, Alejandro A" sort="Sch Ffer, Alejandro A" uniqKey="Sch Ffer A" first="Alejandro A." last="Sch Ffer">Alejandro A. Sch Ffer</name></author><author><name sortKey="Brister, J Rodney" sort="Brister, J Rodney" uniqKey="Brister J" first="J. Rodney" last="Brister">J. Rodney Brister</name></author></analytic><series><title level="j">Nucleic Acids Research</title><idno type="ISSN">0305-1048</idno><idno type="eISSN">1362-4962</idno><imprint><date when="2016">2016</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><title>Abstract</title><p>The Virus Variation Resource is a value-added viral sequence data resource hosted by the National Center for Biotechnology Information. The resource is located at <ext-link ext-link-type="uri" xlink:href="http://www.ncbi.nlm.nih.gov/genome/viruses/variation/">http://www.ncbi.nlm.nih.gov/genome/viruses/variation/</ext-link> and includes modules for seven viral groups: influenza virus, <italic>Dengue virus, West Nile virus, Ebolavirus</italic>, MERS coronavirus, <italic>Rotavirus A</italic> and <italic>Zika virus</italic>. Each module is supported by pipelines that scan newly released GenBank records, annotate genes and proteins and parse sample descriptors and then map them to controlled vocabulary. These processes in turn support a purpose-built search interface where users can select sequences based on standardized gene, protein and metadata terms. Once sequences are selected, a suite of tools for downloading data, multi-sequence alignment and tree building supports a variety of user directed activities. This manuscript describes a series of features and functionalities recently added to the Virus Variation Resource.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Cochrane, G" uniqKey="Cochrane G">G. Cochrane</name></author><author><name sortKey="Karsch Mizrachi, I" uniqKey="Karsch Mizrachi I">I. Karsch-Mizrachi</name></author><author><name sortKey="Takagi, T" uniqKey="Takagi T">T. Takagi</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Benson, D A" uniqKey="Benson D">D.A. Benson</name></author><author><name sortKey="Clark, K" uniqKey="Clark K">K. Clark</name></author><author><name sortKey="Karsch Mizrachi, I" uniqKey="Karsch Mizrachi I">I. Karsch-Mizrachi</name></author><author><name sortKey="Lipman, D J" uniqKey="Lipman D">D.J. Lipman</name></author><author><name sortKey="Ostell, J" uniqKey="Ostell J">J. Ostell</name></author><author><name sortKey="Sayers, E W" uniqKey="Sayers E">E.W. Sayers</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Paul, D" uniqKey="Paul D">D. Paul</name></author><author><name sortKey="Bartenschlager, R" uniqKey="Bartenschlager R">R. Bartenschlager</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Lingala, S" uniqKey="Lingala S">S. Lingala</name></author><author><name sortKey="Ghany, M G" uniqKey="Ghany M">M.G. Ghany</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Mcvey, D S" uniqKey="Mcvey D">D.S. McVey</name></author><author><name sortKey="Wilson, W C" uniqKey="Wilson W">W.C. Wilson</name></author><author><name sortKey="Gay, C G" uniqKey="Gay C">C.G. Gay</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Bavia, L" uniqKey="Bavia L">L. Bavia</name></author><author><name sortKey="Mosimann, A L" uniqKey="Mosimann A">A.L. Mosimann</name></author><author><name sortKey="Aoki, M N" uniqKey="Aoki M">M.N. Aoki</name></author><author><name sortKey="Duarte Dos Santos, C N" uniqKey="Duarte Dos Santos C">C.N. Duarte Dos Santos</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Faggioni, G" uniqKey="Faggioni G">G. Faggioni</name></author><author><name sortKey="Pomponi, A" uniqKey="Pomponi A">A. Pomponi</name></author><author><name sortKey="De Santis, R" uniqKey="De Santis R">R. De Santis</name></author><author><name sortKey="Masuelli, L" uniqKey="Masuelli L">L. Masuelli</name></author><author><name sortKey="Ciammaruconi, A" uniqKey="Ciammaruconi A">A. Ciammaruconi</name></author><author><name sortKey="Monaco, F" uniqKey="Monaco F">F. Monaco</name></author><author><name sortKey="Di Gennaro, A" uniqKey="Di Gennaro A">A. Di Gennaro</name></author><author><name sortKey="Marzocchella, L" uniqKey="Marzocchella L">L. Marzocchella</name></author><author><name sortKey="Sambri, V" uniqKey="Sambri V">V. Sambri</name></author><author><name sortKey="Lelli, R" uniqKey="Lelli R">R. Lelli</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Bao, Y" uniqKey="Bao Y">Y. Bao</name></author><author><name sortKey="Bolotov, P" uniqKey="Bolotov P">P. Bolotov</name></author><author><name sortKey="Dernovoy, D" uniqKey="Dernovoy D">D. Dernovoy</name></author><author><name sortKey="Kiryutin, B" uniqKey="Kiryutin B">B. Kiryutin</name></author><author><name sortKey="Zaslavsky, L" uniqKey="Zaslavsky L">L. Zaslavsky</name></author><author><name sortKey="Tatusova, T" uniqKey="Tatusova T">T. Tatusova</name></author><author><name sortKey="Ostell, J" uniqKey="Ostell J">J. Ostell</name></author><author><name sortKey="Lipman, D" uniqKey="Lipman D">D. Lipman</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Foley, B" uniqKey="Foley B">B. Foley</name></author><author><name sortKey="Leitner, T" uniqKey="Leitner T">T. Leitner</name></author><author><name sortKey="Apetrei, C" uniqKey="Apetrei C">C. Apetrei</name></author><author><name sortKey="Hahn, B" uniqKey="Hahn B">B. Hahn</name></author><author><name sortKey="Mizrachi, I" uniqKey="Mizrachi I">I. Mizrachi</name></author><author><name sortKey="Mullins, J" uniqKey="Mullins J">J. Mullins</name></author><author><name sortKey="Rambaut, A" uniqKey="Rambaut A">A. Rambaut</name></author><author><name sortKey="Wolinsky, S" uniqKey="Wolinsky S">S. Wolinsky</name></author><author><name sortKey="Korber, B" uniqKey="Korber B">B. Korber</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Greene, J M" uniqKey="Greene J">J.M. Greene</name></author><author><name sortKey="Collins, F" uniqKey="Collins F">F. Collins</name></author><author><name sortKey="Lefkowitz, E J" uniqKey="Lefkowitz E">E.J. Lefkowitz</name></author><author><name sortKey="Roos, D" uniqKey="Roos D">D. Roos</name></author><author><name sortKey="Scheuermann, R H" uniqKey="Scheuermann R">R.H. Scheuermann</name></author><author><name sortKey="Sobral, B" uniqKey="Sobral B">B. Sobral</name></author><author><name sortKey="Stevens, R" uniqKey="Stevens R">R. Stevens</name></author><author><name sortKey="White, O" uniqKey="White O">O. White</name></author><author><name sortKey="Di Francesco, V" uniqKey="Di Francesco V">V. Di Francesco</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Pickett, B E" uniqKey="Pickett B">B.E. Pickett</name></author><author><name sortKey="Sadat, E L" uniqKey="Sadat E">E.L. Sadat</name></author><author><name sortKey="Zhang, Y" uniqKey="Zhang Y">Y. Zhang</name></author><author><name sortKey="Noronha, J M" uniqKey="Noronha J">J.M. Noronha</name></author><author><name sortKey="Squires, R B" uniqKey="Squires R">R.B. Squires</name></author><author><name sortKey="Hunt, V" uniqKey="Hunt V">V. Hunt</name></author><author><name sortKey="Liu, M" uniqKey="Liu M">M. Liu</name></author><author><name sortKey="Kumar, S" uniqKey="Kumar S">S. Kumar</name></author><author><name sortKey="Zaremba, S" uniqKey="Zaremba S">S. Zaremba</name></author><author><name sortKey="Gu, Z" uniqKey="Gu Z">Z. Gu</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Van Doorslaer, K" uniqKey="Van Doorslaer K">K. Van Doorslaer</name></author><author><name sortKey="Tan, Q" uniqKey="Tan Q">Q. Tan</name></author><author><name sortKey="Xirasagar, S" uniqKey="Xirasagar S">S. Xirasagar</name></author><author><name sortKey="Bandaru, S" uniqKey="Bandaru S">S. Bandaru</name></author><author><name sortKey="Gopalan, V" uniqKey="Gopalan V">V. Gopalan</name></author><author><name sortKey="Mohamoud, Y" uniqKey="Mohamoud Y">Y. Mohamoud</name></author><author><name sortKey="Huyen, Y" uniqKey="Huyen Y">Y. Huyen</name></author><author><name sortKey="Mcbride, A A" uniqKey="Mcbride A">A.A. McBride</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Resch, W" uniqKey="Resch W">W. Resch</name></author><author><name sortKey="Zaslavsky, L" uniqKey="Zaslavsky L">L. Zaslavsky</name></author><author><name sortKey="Kiryutin, B" uniqKey="Kiryutin B">B. Kiryutin</name></author><author><name sortKey="Rozanov, M" uniqKey="Rozanov M">M. Rozanov</name></author><author><name sortKey="Bao, Y" uniqKey="Bao Y">Y. Bao</name></author><author><name sortKey="Tatusova, T A" uniqKey="Tatusova T">T.A. Tatusova</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Brister, J R" uniqKey="Brister J">J.R. Brister</name></author><author><name sortKey="Bao, Y" uniqKey="Bao Y">Y. Bao</name></author><author><name sortKey="Zhdanov, S A" uniqKey="Zhdanov S">S.A. Zhdanov</name></author><author><name sortKey="Ostapchuck, Y" uniqKey="Ostapchuck Y">Y. Ostapchuck</name></author><author><name sortKey="Chetvernin, V" uniqKey="Chetvernin V">V. Chetvernin</name></author><author><name sortKey="Kiryutin, B" uniqKey="Kiryutin B">B. Kiryutin</name></author><author><name sortKey="Zaslavsky, L" uniqKey="Zaslavsky L">L. Zaslavsky</name></author><author><name sortKey="Kimelman, M" uniqKey="Kimelman M">M. Kimelman</name></author><author><name sortKey="Tatusova, T A" uniqKey="Tatusova T">T.A. Tatusova</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Klema, V J" uniqKey="Klema V">V.J. Klema</name></author><author><name sortKey="Ye, M" uniqKey="Ye M">M. Ye</name></author><author><name sortKey="Hindupur, A" uniqKey="Hindupur A">A. Hindupur</name></author><author><name sortKey="Teramoto, T" uniqKey="Teramoto T">T. Teramoto</name></author><author><name sortKey="Gottipati, K" uniqKey="Gottipati K">K. Gottipati</name></author><author><name sortKey="Padmanabhan, R" uniqKey="Padmanabhan R">R. Padmanabhan</name></author><author><name sortKey="Choi, K H" uniqKey="Choi K">K.H. Choi</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Bell, A" uniqKey="Bell A">A. Bell</name></author><author><name sortKey="Lewandowski, K" uniqKey="Lewandowski K">K. Lewandowski</name></author><author><name sortKey="Myers, R" uniqKey="Myers R">R. Myers</name></author><author><name sortKey="Wooldridge, D" uniqKey="Wooldridge D">D. Wooldridge</name></author><author><name sortKey="Aarons, E" uniqKey="Aarons E">E. Aarons</name></author><author><name sortKey="Simpson, A" uniqKey="Simpson A">A. Simpson</name></author><author><name sortKey="Vipond, R" uniqKey="Vipond R">R. Vipond</name></author><author><name sortKey="Jacobs, M" uniqKey="Jacobs M">M. Jacobs</name></author><author><name sortKey="Gharbia, S" uniqKey="Gharbia S">S. Gharbia</name></author><author><name sortKey="Zambon, M" uniqKey="Zambon M">M. Zambon</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Agbemabiese, C A" uniqKey="Agbemabiese C">C.A. Agbemabiese</name></author><author><name sortKey="Nakagomi, T" uniqKey="Nakagomi T">T. Nakagomi</name></author><author><name sortKey="Doan, Y H" uniqKey="Doan Y">Y.H. Doan</name></author><author><name sortKey="Do, L P" uniqKey="Do L">L.P. Do</name></author><author><name sortKey="Damanka, S" uniqKey="Damanka S">S. Damanka</name></author><author><name sortKey="Armah, G E" uniqKey="Armah G">G.E. Armah</name></author><author><name sortKey="Nakagomi, O" uniqKey="Nakagomi O">O. Nakagomi</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Bao, Y" uniqKey="Bao Y">Y. Bao</name></author><author><name sortKey="Bolotov, P" uniqKey="Bolotov P">P. Bolotov</name></author><author><name sortKey="Dernovoy, D" uniqKey="Dernovoy D">D. Dernovoy</name></author><author><name sortKey="Kiryutin, B" uniqKey="Kiryutin B">B. Kiryutin</name></author><author><name sortKey="Tatusova, T" uniqKey="Tatusova T">T. Tatusova</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="O Leary, N A" uniqKey="O Leary N">N.A. O'Leary</name></author><author><name sortKey="Wright, M W" uniqKey="Wright M">M.W. Wright</name></author><author><name sortKey="Brister, J R" uniqKey="Brister J">J.R. Brister</name></author><author><name sortKey="Ciufo, S" uniqKey="Ciufo S">S. Ciufo</name></author><author><name sortKey="Haddad, D" uniqKey="Haddad D">D. Haddad</name></author><author><name sortKey="Mcveigh, R" uniqKey="Mcveigh R">R. McVeigh</name></author><author><name sortKey="Rajput, B" uniqKey="Rajput B">B. Rajput</name></author><author><name sortKey="Robbertse, B" uniqKey="Robbertse B">B. Robbertse</name></author><author><name sortKey="Smith White, B" uniqKey="Smith White B">B. Smith-White</name></author><author><name sortKey="Ako Adjei, D" uniqKey="Ako Adjei D">D. Ako-Adjei</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Matthijnssens, J" uniqKey="Matthijnssens J">J. Matthijnssens</name></author><author><name sortKey="Ciarlet, M" uniqKey="Ciarlet M">M. Ciarlet</name></author><author><name sortKey="Mcdonald, S M" uniqKey="Mcdonald S">S.M. McDonald</name></author><author><name sortKey="Attoui, H" uniqKey="Attoui H">H. Attoui</name></author><author><name sortKey="Banyai, K" uniqKey="Banyai K">K. Banyai</name></author><author><name sortKey="Brister, J R" uniqKey="Brister J">J.R. Brister</name></author><author><name sortKey="Buesa, J" uniqKey="Buesa J">J. Buesa</name></author><author><name sortKey="Esona, M D" uniqKey="Esona M">M.D. Esona</name></author><author><name sortKey="Estes, M K" uniqKey="Estes M">M.K. Estes</name></author><author><name sortKey="Gentsch, J R" uniqKey="Gentsch J">J.R. Gentsch</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Brister, J R" uniqKey="Brister J">J.R. Brister</name></author><author><name sortKey="Bao, Y" uniqKey="Bao Y">Y. Bao</name></author><author><name sortKey="Kuiken, C" uniqKey="Kuiken C">C. Kuiken</name></author><author><name sortKey="Lefkowitz, E J" uniqKey="Lefkowitz E">E.J. Lefkowitz</name></author><author><name sortKey="Le Mercier, P" uniqKey="Le Mercier P">P. Le Mercier</name></author><author><name sortKey="Leplae, R" uniqKey="Leplae R">R. Leplae</name></author><author><name sortKey="Madupu, R" uniqKey="Madupu R">R. Madupu</name></author><author><name sortKey="Scheuermann, R H" uniqKey="Scheuermann R">R.H. Scheuermann</name></author><author><name sortKey="Schobel, S" uniqKey="Schobel S">S. Schobel</name></author><author><name sortKey="Seto, D" uniqKey="Seto D">D. Seto</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Brister, J R" uniqKey="Brister J">J.R. Brister</name></author><author><name sortKey="Le Mercier, P" uniqKey="Le Mercier P">P. Le Mercier</name></author><author><name sortKey="Hu, J C" uniqKey="Hu J">J.C. Hu</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Kuhn, J H" uniqKey="Kuhn J">J.H. Kuhn</name></author><author><name sortKey="Andersen, K G" uniqKey="Andersen K">K.G. Andersen</name></author><author><name sortKey="Bao, Y" uniqKey="Bao Y">Y. Bao</name></author><author><name sortKey="Bavari, S" uniqKey="Bavari S">S. Bavari</name></author><author><name sortKey="Becker, S" uniqKey="Becker S">S. Becker</name></author><author><name sortKey="Bennett, R S" uniqKey="Bennett R">R.S. Bennett</name></author><author><name sortKey="Bergman, N H" uniqKey="Bergman N">N.H. Bergman</name></author><author><name sortKey="Blinkova, O" uniqKey="Blinkova O">O. Blinkova</name></author><author><name sortKey="Bradfute, S" uniqKey="Bradfute S">S. Bradfute</name></author><author><name sortKey="Brister, J R" uniqKey="Brister J">J.R. Brister</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Brister, J R" uniqKey="Brister J">J.R. Brister</name></author><author><name sortKey="Ako Adjei, D" uniqKey="Ako Adjei D">D. Ako-Adjei</name></author><author><name sortKey="Bao, Y" uniqKey="Bao Y">Y. Bao</name></author><author><name sortKey="Blinkova, O" uniqKey="Blinkova O">O. Blinkova</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Altschul, S F" uniqKey="Altschul S">S.F. Altschul</name></author><author><name sortKey="Madden, T L" uniqKey="Madden T">T.L. Madden</name></author><author><name sortKey="Schaffer, A A" uniqKey="Schaffer A">A.A. Schaffer</name></author><author><name sortKey="Zhang, J" uniqKey="Zhang J">J. Zhang</name></author><author><name sortKey="Zhang, Z" uniqKey="Zhang Z">Z. Zhang</name></author><author><name sortKey="Miller, W" uniqKey="Miller W">W. Miller</name></author><author><name sortKey="Lipman, D J" uniqKey="Lipman D">D.J. Lipman</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Nawrocki, E P" uniqKey="Nawrocki E">E.P. Nawrocki</name></author><author><name sortKey="Eddy, S R" uniqKey="Eddy S">S.R. Eddy</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Matthijnssens, J" uniqKey="Matthijnssens J">J. Matthijnssens</name></author><author><name sortKey="Ciarlet, M" uniqKey="Ciarlet M">M. Ciarlet</name></author><author><name sortKey="Rahman, M" uniqKey="Rahman M">M. Rahman</name></author><author><name sortKey="Attoui, H" uniqKey="Attoui H">H. Attoui</name></author><author><name sortKey="Banyai, K" uniqKey="Banyai K">K. Banyai</name></author><author><name sortKey="Estes, M K" uniqKey="Estes M">M.K. Estes</name></author><author><name sortKey="Gentsch, J R" uniqKey="Gentsch J">J.R. Gentsch</name></author><author><name sortKey="Iturriza Gomara, M" uniqKey="Iturriza Gomara M">M. Iturriza-Gomara</name></author><author><name sortKey="Kirkwood, C D" uniqKey="Kirkwood C">C.D. Kirkwood</name></author><author><name sortKey="Martella, V" uniqKey="Martella V">V. Martella</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Maes, P" uniqKey="Maes P">P. Maes</name></author><author><name sortKey="Matthijnssens, J" uniqKey="Matthijnssens J">J. Matthijnssens</name></author><author><name sortKey="Rahman, M" uniqKey="Rahman M">M. Rahman</name></author><author><name sortKey="Van Ranst, M" uniqKey="Van Ranst M">M. Van Ranst</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Barrett, T" uniqKey="Barrett T">T. Barrett</name></author><author><name sortKey="Clark, K" uniqKey="Clark K">K. Clark</name></author><author><name sortKey="Gevorgyan, R" uniqKey="Gevorgyan R">R. Gevorgyan</name></author><author><name sortKey="Gorelenkov, V" uniqKey="Gorelenkov V">V. Gorelenkov</name></author><author><name sortKey="Gribov, E" uniqKey="Gribov E">E. Gribov</name></author><author><name sortKey="Karsch Mizrachi, I" uniqKey="Karsch Mizrachi I">I. Karsch-Mizrachi</name></author><author><name sortKey="Kimelman, M" uniqKey="Kimelman M">M. Kimelman</name></author><author><name sortKey="Pruitt, K D" uniqKey="Pruitt K">K.D. Pruitt</name></author><author><name sortKey="Resenchuk, S" uniqKey="Resenchuk S">S. Resenchuk</name></author><author><name sortKey="Tatusova, T" uniqKey="Tatusova T">T. Tatusova</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Kodama, Y" uniqKey="Kodama Y">Y. Kodama</name></author><author><name sortKey="Shumway, M" uniqKey="Shumway M">M. Shumway</name></author><author><name sortKey="Leinonen, R" uniqKey="Leinonen R">R. Leinonen</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Zaslavsky, L" uniqKey="Zaslavsky L">L. Zaslavsky</name></author><author><name sortKey="Bao, Y" uniqKey="Bao Y">Y. Bao</name></author><author><name sortKey="Tatusova, T A" uniqKey="Tatusova T">T.A. Tatusova</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Edgar, R C" uniqKey="Edgar R">R.C. Edgar</name></author></analytic></biblStruct></listBibl></div1></back></TEI><pmc article-type="research-article"><pmc-dir>properties open_access</pmc-dir>
<front><journal-meta><journal-id journal-id-type="nlm-ta">Nucleic Acids Res</journal-id><journal-id journal-id-type="iso-abbrev">Nucleic Acids Res</journal-id><journal-id journal-id-type="publisher-id">nar</journal-id><journal-title-group><journal-title>Nucleic Acids Research</journal-title></journal-title-group><issn pub-type="ppub">0305-1048</issn><issn pub-type="epub">1362-4962</issn><publisher><publisher-name>Oxford University Press</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="pmid">27899678</article-id><article-id pub-id-type="pmc">5210549</article-id><article-id pub-id-type="doi">10.1093/nar/gkw1065</article-id><article-id pub-id-type="publisher-id">gkw1065</article-id><article-categories><subj-group subj-group-type="heading"><subject>Database Issue</subject></subj-group></article-categories><title-group><article-title>Virus Variation Resource – improved response to emergent viral outbreaks</article-title></title-group><contrib-group><contrib contrib-type="author"><name><surname>Hatcher</surname><given-names>Eneida L.</given-names></name></contrib><contrib contrib-type="author"><name><surname>Zhdanov</surname><given-names>Sergey A.</given-names></name></contrib><contrib contrib-type="author"><name><surname>Bao</surname><given-names>Yiming</given-names></name></contrib><contrib contrib-type="author"><name><surname>Blinkova</surname><given-names>Olga</given-names></name></contrib><contrib contrib-type="author"><name><surname>Nawrocki</surname><given-names>Eric P.</given-names></name></contrib><contrib contrib-type="author"><name><surname>Ostapchuck</surname><given-names>Yuri</given-names></name></contrib><contrib contrib-type="author"><name><surname>Schäffer</surname><given-names>Alejandro A.</given-names></name></contrib><contrib contrib-type="author"><name><surname>Brister</surname><given-names>J. Rodney</given-names></name><pmc-comment>jamesbr@ncbi.nlm.nih.gov </pmc-comment>
<xref ref-type="corresp" rid="COR1"></xref></contrib></contrib-group><aff id="AFF1">National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA</aff><author-notes><corresp id="COR1"><label>*</label>To whom correspondence should be addressed. Tel: +1 301 594 6099; Fax: +1 301 402 9651; Email: <email>jamesbr@ncbi.nlm.nih.gov</email></corresp></author-notes><pub-date pub-type="ppub"><day>04</day><month>1</month><year>2017</year></pub-date><pub-date pub-type="epub" iso-8601-date="2016-11-28"><day>28</day><month>11</month><year>2016</year></pub-date><pub-date pub-type="pmc-release"><day>28</day><month>11</month><year>2016</year></pub-date><pmc-comment> PMC Release delay is 0 months and 0 days and was based on the
<volume>45</volume><issue>Database issue</issue><issue-title>Database issue</issue-title><fpage>D482</fpage><lpage>D490</lpage><history><date date-type="accepted"><day>28</day><month>10</month><year>2016</year></date><date date-type="rev-recd"><day>20</day><month>10</month><year>2016</year></date><date date-type="received"><day>15</day><month>9</month><year>2016</year></date></history><permissions><copyright-statement>Published by Oxford University Press on behalf of Nucleic Acids Research 2016.</copyright-statement><copyright-year>2017</copyright-year><license license-type="us-gov"><license-p>This work is written by (a) US Government employee(s) and is in the public domain in the US.</license-p></license><license><license-p>This article is made available via the PMC Open Access Subset for unrestricted re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the COVID-19 pandemic or until permissions are revoked in writing. Upon expiration of these permissions, PMC is granted a perpetual license to make this article available via PMC and Europe PMC, consistent with existing copyright protections.</license-p></license></permissions><self-uri xlink:href="gkw1065.pdf"></self-uri><abstract><title>Abstract</title><p>The Virus Variation Resource is a value-added viral sequence data resource hosted by the National Center for Biotechnology Information. The resource is located at <ext-link ext-link-type="uri" xlink:href="http://www.ncbi.nlm.nih.gov/genome/viruses/variation/">http://www.ncbi.nlm.nih.gov/genome/viruses/variation/</ext-link> and includes modules for seven viral groups: influenza virus, <italic>Dengue virus, West Nile virus, Ebolavirus</italic>, MERS coronavirus, <italic>Rotavirus A</italic> and <italic>Zika virus</italic>. Each module is supported by pipelines that scan newly released GenBank records, annotate genes and proteins and parse sample descriptors and then map them to controlled vocabulary. These processes in turn support a purpose-built search interface where users can select sequences based on standardized gene, protein and metadata terms. Once sequences are selected, a suite of tools for downloading data, multi-sequence alignment and tree building supports a variety of user directed activities. This manuscript describes a series of features and functionalities recently added to the Virus Variation Resource.</p></abstract><counts><page-count count="9"></page-count></counts></article-meta></front></pmc><affiliations><list></list><tree><noCountry><name sortKey="Bao, Yiming" sort="Bao, Yiming" uniqKey="Bao Y" first="Yiming" last="Bao">Yiming Bao</name><name sortKey="Blinkova, Olga" sort="Blinkova, Olga" uniqKey="Blinkova O" first="Olga" last="Blinkova">Olga Blinkova</name><name sortKey="Brister, J Rodney" sort="Brister, J Rodney" uniqKey="Brister J" first="J. Rodney" last="Brister">J. Rodney Brister</name><name sortKey="Hatcher, Eneida L" sort="Hatcher, Eneida L" uniqKey="Hatcher E" first="Eneida L." last="Hatcher">Eneida L. Hatcher</name><name sortKey="Nawrocki, Eric P" sort="Nawrocki, Eric P" uniqKey="Nawrocki E" first="Eric P." last="Nawrocki">Eric P. Nawrocki</name><name sortKey="Ostapchuck, Yuri" sort="Ostapchuck, Yuri" uniqKey="Ostapchuck Y" first="Yuri" last="Ostapchuck">Yuri Ostapchuck</name><name sortKey="Sch Ffer, Alejandro A" sort="Sch Ffer, Alejandro A" uniqKey="Sch Ffer A" first="Alejandro A." last="Sch Ffer">Alejandro A. Sch Ffer</name><name sortKey="Zhdanov, Sergey A" sort="Zhdanov, Sergey A" uniqKey="Zhdanov S" first="Sergey A." last="Zhdanov">Sergey A. Zhdanov</name></noCountry></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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