Strings and Genomes
Identifieur interne : 000274 ( Istex/Curation ); précédent : 000273; suivant : 000275Strings and Genomes
Auteurs : Vincenzo Manca [Italie]Source :
- Emergence, Complexity and Computation [ 2194-7287 ]
Abstract
Abstract: Strings constitute the mathematical structures of informational biopolymers. Genomes are long strings (hundreds of thousands, or millions, or billions of characters) built over the four nucleotides, and many typical operations over genomes are naturally expressed by string operations. In this chapter we present basic concepts about DNA molecules and genomes in algorithmic terms, by emphasizing the roles of strings, formal languages, and multisets of strings in the analysis of typical biological and biotechnological DNA manipulations. We conclude by outlining some research lines of genome analysis which are based on genomic dictionaries. The chapter is mostly based on the author’s published papers (see References for Chapter 2).
Url:
DOI: 10.1007/978-3-642-36223-1_2
Links toward previous steps (curation, corpus...)
- to stream Istex, to step Corpus: Pour aller vers cette notice dans l'étape Curation :000274
Links to Exploration step
ISTEX:45A3C9C5B57E0AF3EAB58B2EF48418DFE6164919Le document en format XML
<record><TEI wicri:istexFullTextTei="biblStruct"><teiHeader><fileDesc><titleStmt><title xml:lang="en">Strings and Genomes</title><author><name sortKey="Manca, Vincenzo" sort="Manca, Vincenzo" uniqKey="Manca V" first="Vincenzo" last="Manca">Vincenzo Manca</name><affiliation wicri:level="1"><mods:affiliation>Dipartimento di Informatica, Universita’ degli Studi di Verona, Verona, Italy</mods:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>Dipartimento di Informatica, Universita’ degli Studi di Verona, Verona</wicri:regionArea></affiliation><affiliation wicri:level="1"><mods:affiliation>E-mail: vincenzo.manca@univr.it</mods:affiliation><country wicri:rule="url">Italie</country></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">ISTEX</idno><idno type="RBID">ISTEX:45A3C9C5B57E0AF3EAB58B2EF48418DFE6164919</idno><date when="2013" year="2013">2013</date><idno type="doi">10.1007/978-3-642-36223-1_2</idno><idno type="url">https://api.istex.fr/ark:/67375/HCB-L6SQ6CM4-B/fulltext.pdf</idno><idno type="wicri:Area/Istex/Corpus">000274</idno><idno type="wicri:explorRef" wicri:stream="Istex" wicri:step="Corpus" wicri:corpus="ISTEX">000274</idno><idno type="wicri:Area/Istex/Curation">000274</idno></publicationStmt><sourceDesc><biblStruct><analytic><title level="a" type="main" xml:lang="en">Strings and Genomes</title><author><name sortKey="Manca, Vincenzo" sort="Manca, Vincenzo" uniqKey="Manca V" first="Vincenzo" last="Manca">Vincenzo Manca</name><affiliation wicri:level="1"><mods:affiliation>Dipartimento di Informatica, Universita’ degli Studi di Verona, Verona, Italy</mods:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>Dipartimento di Informatica, Universita’ degli Studi di Verona, Verona</wicri:regionArea></affiliation><affiliation wicri:level="1"><mods:affiliation>E-mail: vincenzo.manca@univr.it</mods:affiliation><country wicri:rule="url">Italie</country></affiliation></author></analytic><monogr></monogr><series><title level="s" type="main" xml:lang="en">Emergence, Complexity and Computation</title><title level="s" type="abbrev">Emergence, Complexity, Computation</title><idno type="ISSN">2194-7287</idno><idno type="eISSN">2194-7295</idno><idno type="ISSN">2194-7287</idno></series></biblStruct></sourceDesc><seriesStmt><idno type="ISSN">2194-7287</idno></seriesStmt></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Abstract: Strings constitute the mathematical structures of informational biopolymers. Genomes are long strings (hundreds of thousands, or millions, or billions of characters) built over the four nucleotides, and many typical operations over genomes are naturally expressed by string operations. In this chapter we present basic concepts about DNA molecules and genomes in algorithmic terms, by emphasizing the roles of strings, formal languages, and multisets of strings in the analysis of typical biological and biotechnological DNA manipulations. We conclude by outlining some research lines of genome analysis which are based on genomic dictionaries. The chapter is mostly based on the author’s published papers (see References for Chapter 2).</div></front></TEI></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Sante/explor/MersV1/Data/Istex/Curation
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000274 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Istex/Curation/biblio.hfd -nk 000274 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Sante
|area= MersV1
|flux= Istex
|étape= Curation
|type= RBID
|clé= ISTEX:45A3C9C5B57E0AF3EAB58B2EF48418DFE6164919
|texte= Strings and Genomes
}}
| This area was generated with Dilib version V0.6.33. |  |