Strings and Genomes
Identifieur interne : 000274 ( Istex/Corpus ); précédent : 000273; suivant : 000275Strings and Genomes
Auteurs : Vincenzo MancaSource :
- Emergence, Complexity and Computation [ 2194-7287 ]
Abstract
Abstract: Strings constitute the mathematical structures of informational biopolymers. Genomes are long strings (hundreds of thousands, or millions, or billions of characters) built over the four nucleotides, and many typical operations over genomes are naturally expressed by string operations. In this chapter we present basic concepts about DNA molecules and genomes in algorithmic terms, by emphasizing the roles of strings, formal languages, and multisets of strings in the analysis of typical biological and biotechnological DNA manipulations. We conclude by outlining some research lines of genome analysis which are based on genomic dictionaries. The chapter is mostly based on the author’s published papers (see References for Chapter 2).
Url:
DOI: 10.1007/978-3-642-36223-1_2
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Genomes are long strings (hundreds of thousands, or millions, or billions of characters) built over the four nucleotides, and many typical operations over genomes are naturally expressed by string operations. In this chapter we present basic concepts about DNA molecules and genomes in algorithmic terms, by emphasizing the roles of strings, formal languages, and multisets of strings in the analysis of typical biological and biotechnological DNA manipulations. We conclude by outlining some research lines of genome analysis which are based on genomic dictionaries. The chapter is mostly based on the author’s published papers (see <Emphasis Type="Bold">References for Chapter 2</Emphasis>).</Para></Abstract></ChapterHeader><NoBody></NoBody></Chapter></Part></Book></Series></Publisher></istex:document></istex:metadataXml><mods version="3.6"><titleInfo lang="en"><title>Strings and Genomes</title></titleInfo><titleInfo type="alternative" contentType="CDATA"><title>Strings and Genomes</title></titleInfo><name type="personal" displayLabel="corresp"><namePart type="given">Vincenzo</namePart><namePart type="family">Manca</namePart><affiliation>Dipartimento di Informatica, Universita’ degli Studi di Verona, Verona, Italy</affiliation><affiliation>E-mail: vincenzo.manca@univr.it</affiliation><role><roleTerm type="text">author</roleTerm></role></name><typeOfResource>text</typeOfResource><genre displayLabel="OriginalPaper" authority="ISTEX" authorityURI="https://content-type.data.istex.fr" type="research-article" valueURI="https://content-type.data.istex.fr/ark:/67375/XTP-1JC4F85T-7">research-article</genre><originInfo><publisher>Springer Berlin Heidelberg</publisher><place><placeTerm type="text">Berlin, Heidelberg</placeTerm></place><dateIssued encoding="w3cdtf">2013</dateIssued><copyrightDate encoding="w3cdtf">2013</copyrightDate></originInfo><language><languageTerm type="code" authority="rfc3066">en</languageTerm><languageTerm type="code" authority="iso639-2b">eng</languageTerm></language><abstract lang="en">Abstract: Strings constitute the mathematical structures of informational biopolymers. Genomes are long strings (hundreds of thousands, or millions, or billions of characters) built over the four nucleotides, and many typical operations over genomes are naturally expressed by string operations. In this chapter we present basic concepts about DNA molecules and genomes in algorithmic terms, by emphasizing the roles of strings, formal languages, and multisets of strings in the analysis of typical biological and biotechnological DNA manipulations. We conclude by outlining some research lines of genome analysis which are based on genomic dictionaries. 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