The nucleotide sequence of hydrangea mosaic virus RNA 3 exhibits similarity with the RNA 3 of tobacco streak virus
Identifieur interne : 001737 ( Istex/Corpus ); précédent : 001736; suivant : 001738The nucleotide sequence of hydrangea mosaic virus RNA 3 exhibits similarity with the RNA 3 of tobacco streak virus
Auteurs : Xin Ge ; S. W. ScottSource :
- Virus Research [ 0168-1702 ] ; 1996.
English descriptors
- Teeft :
- Amino, Amino acid sequence, Amino acid sequences, Amino acids, Apmv, Boca raton, Bromoviridae, Coat protein, Complete nucleotide sequence, Genus ilarvirus, Hdmv, Hydrangea, Hydrangea mosaic virus, Ilarvirus, Ilarviruses, Intergenic region, Mosaic, Nucleic acids, Nucleotide, Nucleotide sequence, Open reading frames, Other ilarviruses, Other members, Other viruses, Pnrsv, Proximal half, Putative translation product, Putative translation products, Ringspot virus, Scott virus research, Serological relationship, Serological relationships, Subgroup, Tobacco streak virus, Viral, Viral replication, Virol, Virus.
Abstract
Abstract: The complete nucleotide sequence of the RNA 3 of hydrangea mosaic virus (HdMV) was determined. It consists of 2268 nucleotides and contains two open reading frames (ORF). ORF 1 encodes for a putative translation product of 293 amino acids which shared 64.9% identity with the 3a protein of tobacco streak virus (TSV). ORF 2 encodes for a putative translation product of 220 amino acids which shared 54.2% identity with the coat protein of TSV. The relationship between the proteins of HdMV and the corresponding proteins of ilarviruses other than TSV was more distant. No zinc-finger-like motif was found in the coat protein of HdMV but the N-terminus of the protein was rich in basic amino acids. Both terminal, non-coding regions of HdMV RNA 3 contained repeated sequences with corresponding homologous fragments in the RNA 3 of TSV. On the basis of the similarities between HdMV and TSV that we detected, we propose that HdMV be included in subgroup 1 of the genus Ilarvirus together with TSV.
Url:
DOI: 10.1016/0168-1702(95)01251-6
Links to Exploration step
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<front><div type="abstract" xml:lang="en">Abstract: The complete nucleotide sequence of the RNA 3 of hydrangea mosaic virus (HdMV) was determined. It consists of 2268 nucleotides and contains two open reading frames (ORF). ORF 1 encodes for a putative translation product of 293 amino acids which shared 64.9% identity with the 3a protein of tobacco streak virus (TSV). ORF 2 encodes for a putative translation product of 220 amino acids which shared 54.2% identity with the coat protein of TSV. The relationship between the proteins of HdMV and the corresponding proteins of ilarviruses other than TSV was more distant. No zinc-finger-like motif was found in the coat protein of HdMV but the N-terminus of the protein was rich in basic amino acids. Both terminal, non-coding regions of HdMV RNA 3 contained repeated sequences with corresponding homologous fragments in the RNA 3 of TSV. On the basis of the similarities between HdMV and TSV that we detected, we propose that HdMV be included in subgroup 1 of the genus Ilarvirus together with TSV.</div>
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<ce:date-accepted day="4" month="10" year="1995"></ce:date-accepted>
<ce:abstract><ce:section-title>Abstract</ce:section-title>
<ce:abstract-sec><ce:simple-para>The complete nucleotide sequence of the RNA 3 of hydrangea mosaic virus (HdMV) was determined. It consists of 2268 nucleotides and contains two open reading frames (ORF). ORF 1 encodes for a putative translation product of 293 amino acids which shared 64.9% identity with the 3a protein of tobacco streak virus (TSV). ORF 2 encodes for a putative translation product of 220 amino acids which shared 54.2% identity with the coat protein of TSV. The relationship between the proteins of HdMV and the corresponding proteins of ilarviruses other than TSV was more distant. No zinc-finger-like motif was found in the coat protein of HdMV but the <ce:italic>N</ce:italic>
-terminus of the protein was rich in basic amino acids. Both terminal, non-coding regions of HdMV RNA 3 contained repeated sequences with corresponding homologous fragments in the RNA 3 of TSV. On the basis of the similarities between HdMV and TSV that we detected, we propose that HdMV be included in subgroup 1 of the genus <ce:italic>Ilarvirus</ce:italic>
together with TSV.</ce:simple-para>
</ce:abstract-sec>
</ce:abstract>
<ce:keywords><ce:section-title>Keywords</ce:section-title>
<ce:keyword><ce:text>Hydrangea mosaic virus (HdMV)</ce:text>
</ce:keyword>
<ce:keyword><ce:text><ce:italic>Ilarvirus</ce:italic>
</ce:text>
</ce:keyword>
<ce:keyword><ce:text><ce:italic>Bromoviridae</ce:italic>
</ce:text>
</ce:keyword>
<ce:keyword><ce:text>Nucleotide sequence</ce:text>
</ce:keyword>
<ce:keyword><ce:text>Relationship</ce:text>
</ce:keyword>
</ce:keywords>
</head>
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<mods version="3.6"><titleInfo><title>The nucleotide sequence of hydrangea mosaic virus RNA 3 exhibits similarity with the RNA 3 of tobacco streak virus</title>
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<titleInfo type="alternative" contentType="CDATA"><title>The nucleotide sequence of hydrangea mosaic virus RNA 3 exhibits similarity with the RNA 3 of tobacco streak virus</title>
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<name type="personal"><namePart type="given">Xin</namePart>
<namePart type="family">Ge</namePart>
<affiliation>Department of Plant Pathology and Physiology, Clemson University, Clemson, SC 29634-0377, USA</affiliation>
<description>Present address: Department of Biological Sciences, University of South Carolina, Columbia, SC 29208, USA.</description>
<role><roleTerm type="text">author</roleTerm>
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<name type="personal"><namePart type="given">S.W.</namePart>
<namePart type="family">Scott</namePart>
<affiliation>Department of Plant Pathology and Physiology, Clemson University, Clemson, SC 29634-0377, USA</affiliation>
<affiliation>E-mail: sscott@clemson.edu</affiliation>
<description>Corresponding author. Tel.: + 1 864 656 5745; Fax + 1 864 656 0274</description>
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<abstract lang="en">Abstract: The complete nucleotide sequence of the RNA 3 of hydrangea mosaic virus (HdMV) was determined. It consists of 2268 nucleotides and contains two open reading frames (ORF). ORF 1 encodes for a putative translation product of 293 amino acids which shared 64.9% identity with the 3a protein of tobacco streak virus (TSV). ORF 2 encodes for a putative translation product of 220 amino acids which shared 54.2% identity with the coat protein of TSV. The relationship between the proteins of HdMV and the corresponding proteins of ilarviruses other than TSV was more distant. No zinc-finger-like motif was found in the coat protein of HdMV but the N-terminus of the protein was rich in basic amino acids. Both terminal, non-coding regions of HdMV RNA 3 contained repeated sequences with corresponding homologous fragments in the RNA 3 of TSV. On the basis of the similarities between HdMV and TSV that we detected, we propose that HdMV be included in subgroup 1 of the genus Ilarvirus together with TSV.</abstract>
<note type="content">Section title: Research paper</note>
<subject><genre>Keywords</genre>
<topic>Hydrangea mosaic virus (HdMV)</topic>
<topic>Ilarvirus</topic>
<topic>Bromoviridae</topic>
<topic>Nucleotide sequence</topic>
<topic>Relationship</topic>
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<dateIssued encoding="w3cdtf">1996</dateIssued>
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<identifier type="ISSN">0168-1702</identifier>
<identifier type="PII">S0168-1702(00)X0005-6</identifier>
<part><date>1996</date>
<detail type="volume"><number>40</number>
<caption>vol.</caption>
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<detail type="issue"><number>1</number>
<caption>no.</caption>
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<extent unit="issue-pages"><start>1</start>
<end>111</end>
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<extent unit="pages"><start>57</start>
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