The nucleotide sequence of hydrangea mosaic virus RNA 3 exhibits similarity with the RNA 3 of tobacco streak virus
Identifieur interne : 001737 ( Istex/Corpus ); précédent : 001736; suivant : 001738The nucleotide sequence of hydrangea mosaic virus RNA 3 exhibits similarity with the RNA 3 of tobacco streak virus
Auteurs : Xin Ge ; S. W. ScottSource :
- Virus Research [ 0168-1702 ] ; 1996.
English descriptors
- Teeft :
- Amino, Amino acid sequence, Amino acid sequences, Amino acids, Apmv, Boca raton, Bromoviridae, Coat protein, Complete nucleotide sequence, Genus ilarvirus, Hdmv, Hydrangea, Hydrangea mosaic virus, Ilarvirus, Ilarviruses, Intergenic region, Mosaic, Nucleic acids, Nucleotide, Nucleotide sequence, Open reading frames, Other ilarviruses, Other members, Other viruses, Pnrsv, Proximal half, Putative translation product, Putative translation products, Ringspot virus, Scott virus research, Serological relationship, Serological relationships, Subgroup, Tobacco streak virus, Viral, Viral replication, Virol, Virus.
Abstract
Abstract: The complete nucleotide sequence of the RNA 3 of hydrangea mosaic virus (HdMV) was determined. It consists of 2268 nucleotides and contains two open reading frames (ORF). ORF 1 encodes for a putative translation product of 293 amino acids which shared 64.9% identity with the 3a protein of tobacco streak virus (TSV). ORF 2 encodes for a putative translation product of 220 amino acids which shared 54.2% identity with the coat protein of TSV. The relationship between the proteins of HdMV and the corresponding proteins of ilarviruses other than TSV was more distant. No zinc-finger-like motif was found in the coat protein of HdMV but the N-terminus of the protein was rich in basic amino acids. Both terminal, non-coding regions of HdMV RNA 3 contained repeated sequences with corresponding homologous fragments in the RNA 3 of TSV. On the basis of the similarities between HdMV and TSV that we detected, we propose that HdMV be included in subgroup 1 of the genus Ilarvirus together with TSV.
Url:
DOI: 10.1016/0168-1702(95)01251-6
Links to Exploration step
ISTEX:E38401E09CAB3D7B2052950BC5328BC8E668C6E7Le document en format XML
<record><TEI wicri:istexFullTextTei="biblStruct"><teiHeader><fileDesc><titleStmt><title>The nucleotide sequence of hydrangea mosaic virus RNA 3 exhibits similarity with the RNA 3 of tobacco streak virus</title><author><name sortKey="Ge, Xin" sort="Ge, Xin" uniqKey="Ge X" first="Xin" last="Ge">Xin Ge</name><affiliation><mods:affiliation>Department of Plant Pathology and Physiology, Clemson University, Clemson, SC 29634-0377, USA</mods:affiliation></affiliation></author><author><name sortKey="Scott, S W" sort="Scott, S W" uniqKey="Scott S" first="S. W." last="Scott">S. W. Scott</name><affiliation><mods:affiliation>Department of Plant Pathology and Physiology, Clemson University, Clemson, SC 29634-0377, USA</mods:affiliation></affiliation><affiliation><mods:affiliation>E-mail: sscott@clemson.edu</mods:affiliation></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">ISTEX</idno><idno type="RBID">ISTEX:E38401E09CAB3D7B2052950BC5328BC8E668C6E7</idno><date when="1996" year="1996">1996</date><idno type="doi">10.1016/0168-1702(95)01251-6</idno><idno type="url">https://api.istex.fr/ark:/67375/6H6-H71M6TXL-P/fulltext.pdf</idno><idno type="wicri:Area/Istex/Corpus">001737</idno><idno type="wicri:explorRef" wicri:stream="Istex" wicri:step="Corpus" wicri:corpus="ISTEX">001737</idno></publicationStmt><sourceDesc><biblStruct><analytic><title level="a">The nucleotide sequence of hydrangea mosaic virus RNA 3 exhibits similarity with the RNA 3 of tobacco streak virus</title><author><name sortKey="Ge, Xin" sort="Ge, Xin" uniqKey="Ge X" first="Xin" last="Ge">Xin Ge</name><affiliation><mods:affiliation>Department of Plant Pathology and Physiology, Clemson University, Clemson, SC 29634-0377, USA</mods:affiliation></affiliation></author><author><name sortKey="Scott, S W" sort="Scott, S W" uniqKey="Scott S" first="S. W." last="Scott">S. W. Scott</name><affiliation><mods:affiliation>Department of Plant Pathology and Physiology, Clemson University, Clemson, SC 29634-0377, USA</mods:affiliation></affiliation><affiliation><mods:affiliation>E-mail: sscott@clemson.edu</mods:affiliation></affiliation></author></analytic><monogr></monogr><series><title level="j">Virus Research</title><title level="j" type="abbrev">VIRUS</title><idno type="ISSN">0168-1702</idno><imprint><publisher>ELSEVIER</publisher><date type="published" when="1996">1996</date><biblScope unit="volume">40</biblScope><biblScope unit="issue">1</biblScope><biblScope unit="page" from="57">57</biblScope><biblScope unit="page" to="63">63</biblScope></imprint><idno type="ISSN">0168-1702</idno></series></biblStruct></sourceDesc><seriesStmt><idno type="ISSN">0168-1702</idno></seriesStmt></fileDesc><profileDesc><textClass><keywords scheme="Teeft" xml:lang="en"><term>Amino</term><term>Amino acid sequence</term><term>Amino acid sequences</term><term>Amino acids</term><term>Apmv</term><term>Boca raton</term><term>Bromoviridae</term><term>Coat protein</term><term>Complete nucleotide sequence</term><term>Genus ilarvirus</term><term>Hdmv</term><term>Hydrangea</term><term>Hydrangea mosaic virus</term><term>Ilarvirus</term><term>Ilarviruses</term><term>Intergenic region</term><term>Mosaic</term><term>Nucleic acids</term><term>Nucleotide</term><term>Nucleotide sequence</term><term>Open reading frames</term><term>Other ilarviruses</term><term>Other members</term><term>Other viruses</term><term>Pnrsv</term><term>Proximal half</term><term>Putative translation product</term><term>Putative translation products</term><term>Ringspot virus</term><term>Scott virus research</term><term>Serological relationship</term><term>Serological relationships</term><term>Subgroup</term><term>Tobacco streak virus</term><term>Viral</term><term>Viral replication</term><term>Virol</term><term>Virus</term></keywords></textClass><langUsage><language ident="en">en</language></langUsage></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Abstract: The complete nucleotide sequence of the RNA 3 of hydrangea mosaic virus (HdMV) was determined. It consists of 2268 nucleotides and contains two open reading frames (ORF). ORF 1 encodes for a putative translation product of 293 amino acids which shared 64.9% identity with the 3a protein of tobacco streak virus (TSV). ORF 2 encodes for a putative translation product of 220 amino acids which shared 54.2% identity with the coat protein of TSV. The relationship between the proteins of HdMV and the corresponding proteins of ilarviruses other than TSV was more distant. No zinc-finger-like motif was found in the coat protein of HdMV but the N-terminus of the protein was rich in basic amino acids. Both terminal, non-coding regions of HdMV RNA 3 contained repeated sequences with corresponding homologous fragments in the RNA 3 of TSV. On the basis of the similarities between HdMV and TSV that we detected, we propose that HdMV be included in subgroup 1 of the genus Ilarvirus together with TSV.</div></front></TEI><istex><corpusName>elsevier</corpusName><keywords><teeft><json:string>hdmv</json:string><json:string>subgroup</json:string><json:string>ilarviruses</json:string><json:string>ilarvirus</json:string><json:string>amino acids</json:string><json:string>virol</json:string><json:string>bromoviridae</json:string><json:string>hydrangea</json:string><json:string>complete nucleotide sequence</json:string><json:string>other ilarviruses</json:string><json:string>viral</json:string><json:string>nucleotide sequence</json:string><json:string>pnrsv</json:string><json:string>apmv</json:string><json:string>amino</json:string><json:string>hydrangea mosaic virus</json:string><json:string>nucleotide</json:string><json:string>scott virus research</json:string><json:string>coat protein</json:string><json:string>tobacco streak virus</json:string><json:string>serological relationship</json:string><json:string>other members</json:string><json:string>mosaic</json:string><json:string>virus</json:string><json:string>ringspot virus</json:string><json:string>boca raton</json:string><json:string>open reading frames</json:string><json:string>other viruses</json:string><json:string>amino acid sequences</json:string><json:string>putative translation products</json:string><json:string>intergenic region</json:string><json:string>amino acid sequence</json:string><json:string>putative translation product</json:string><json:string>proximal half</json:string><json:string>viral replication</json:string><json:string>genus ilarvirus</json:string><json:string>nucleic acids</json:string><json:string>serological relationships</json:string></teeft></keywords><author><json:item><name>Xin Ge</name><affiliations><json:string>Department of Plant Pathology and Physiology, Clemson University, Clemson, SC 29634-0377, USA</json:string></affiliations></json:item><json:item><name>S.W. Scott</name><affiliations><json:string>Department of Plant Pathology and Physiology, Clemson University, Clemson, SC 29634-0377, USA</json:string><json:string>E-mail: sscott@clemson.edu</json:string></affiliations></json:item></author><subject><json:item><lang><json:string>eng</json:string></lang><value>Hydrangea mosaic virus (HdMV)</value></json:item><json:item><lang><json:string>eng</json:string></lang><value>Ilarvirus</value></json:item><json:item><lang><json:string>eng</json:string></lang><value>Bromoviridae</value></json:item><json:item><lang><json:string>eng</json:string></lang><value>Nucleotide sequence</value></json:item><json:item><lang><json:string>eng</json:string></lang><value>Relationship</value></json:item></subject><arkIstex>ark:/67375/6H6-H71M6TXL-P</arkIstex><language><json:string>eng</json:string></language><originalGenre><json:string>Full-length article</json:string></originalGenre><abstract>Abstract: The complete nucleotide sequence of the RNA 3 of hydrangea mosaic virus (HdMV) was determined. It consists of 2268 nucleotides and contains two open reading frames (ORF). ORF 1 encodes for a putative translation product of 293 amino acids which shared 64.9% identity with the 3a protein of tobacco streak virus (TSV). ORF 2 encodes for a putative translation product of 220 amino acids which shared 54.2% identity with the coat protein of TSV. The relationship between the proteins of HdMV and the corresponding proteins of ilarviruses other than TSV was more distant. No zinc-finger-like motif was found in the coat protein of HdMV but the N-terminus of the protein was rich in basic amino acids. Both terminal, non-coding regions of HdMV RNA 3 contained repeated sequences with corresponding homologous fragments in the RNA 3 of TSV. On the basis of the similarities between HdMV and TSV that we detected, we propose that HdMV be included in subgroup 1 of the genus Ilarvirus together with TSV.</abstract><qualityIndicators><score>7.137</score><pdfWordCount>3133</pdfWordCount><pdfCharCount>19524</pdfCharCount><pdfVersion>1.2</pdfVersion><pdfPageCount>7</pdfPageCount><pdfPageSize>540 x 764 pts</pdfPageSize><refBibsNative>true</refBibsNative><abstractWordCount>167</abstractWordCount><abstractCharCount>1006</abstractCharCount><keywordCount>5</keywordCount></qualityIndicators><title>The nucleotide sequence of hydrangea mosaic virus RNA 3 exhibits similarity with the RNA 3 of tobacco streak virus</title><pmid><json:string>8725121</json:string></pmid><pii><json:string>0168-1702(95)01251-6</json:string></pii><genre><json:string>research-article</json:string></genre><serie><title>RNA Genetics</title><language><json:string>unknown</json:string></language><volume>Volume II</volume><pages><first>211</first><last>240</last></pages></serie><host><title>Virus Research</title><language><json:string>unknown</json:string></language><publicationDate>1996</publicationDate><issn><json:string>0168-1702</json:string></issn><pii><json:string>S0168-1702(00)X0005-6</json:string></pii><volume>40</volume><issue>1</issue><pages><first>57</first><last>63</last></pages><genre><json:string>journal</json:string></genre></host><namedEntities><unitex><date><json:string>1993</json:string><json:string>1994</json:string><json:string>1996</json:string></date><geogName></geogName><orgName><json:string>Department of Biological Sciences, University of South Carolina, Columbia, SC</json:string><json:string>Clemson University</json:string></orgName><orgName_funder></orgName_funder><orgName_provider></orgName_provider><persName><json:string>Bromoviridae</json:string><json:string>S.W. 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(1995)</json:string><json:string>Bachman et al., 1994</json:string><json:string>Reusken et al., 1994</json:string><json:string>Baer et al., 1994</json:string><json:string>Navarro and Phllas, 1994</json:string><json:string>Thomas et al., 1983</json:string><json:string>Guo et al., 1995</json:string><json:string>Houser-Scott et al., 1994</json:string><json:string>Alrefai et al., 1994</json:string><json:string>Lisa et al. (1994)</json:string><json:string>Bujarski et al., 1994</json:string><json:string>Zimmern, 1988</json:string><json:string>Shiel et al., 1995</json:string><json:string>Sehnke et al., 1989</json:string></ref_bibl><bibl></bibl></unitex></namedEntities><ark><json:string>ark:/67375/6H6-H71M6TXL-P</json:string></ark><categories><wos><json:string>1 - science</json:string><json:string>2 - virology</json:string></wos><scienceMetrix><json:string>1 - health sciences</json:string><json:string>2 - biomedical research</json:string><json:string>3 - virology</json:string></scienceMetrix><scopus><json:string>1 - Life Sciences</json:string><json:string>2 - Biochemistry, Genetics and Molecular Biology</json:string><json:string>3 - Cancer Research</json:string><json:string>1 - Health Sciences</json:string><json:string>2 - Medicine</json:string><json:string>3 - Infectious Diseases</json:string><json:string>1 - Life Sciences</json:string><json:string>2 - Immunology and Microbiology</json:string><json:string>3 - Virology</json:string></scopus><inist><json:string>1 - sciences appliquees, technologies et medecines</json:string><json:string>2 - sciences biologiques et medicales</json:string><json:string>3 - sciences biologiques fondamentales et appliquees. psychologie</json:string><json:string>4 - phytopathologie. zoologie agricole. protection des cultures et des forets</json:string></inist></categories><publicationDate>1996</publicationDate><copyrightDate>1996</copyrightDate><doi><json:string>10.1016/0168-1702(95)01251-6</json:string></doi><id>E38401E09CAB3D7B2052950BC5328BC8E668C6E7</id><score>1</score><fulltext><json:item><extension>pdf</extension><original>true</original><mimetype>application/pdf</mimetype><uri>https://api.istex.fr/ark:/67375/6H6-H71M6TXL-P/fulltext.pdf</uri></json:item><json:item><extension>zip</extension><original>false</original><mimetype>application/zip</mimetype><uri>https://api.istex.fr/ark:/67375/6H6-H71M6TXL-P/bundle.zip</uri></json:item><istex:fulltextTEI uri="https://api.istex.fr/ark:/67375/6H6-H71M6TXL-P/fulltext.tei"><teiHeader><fileDesc><titleStmt><title level="a">The nucleotide sequence of hydrangea mosaic virus RNA 3 exhibits similarity with the RNA 3 of tobacco streak virus</title></titleStmt><publicationStmt><authority>ISTEX</authority><publisher scheme="https://scientific-publisher.data.istex.fr">ELSEVIER</publisher><availability><licence><p>elsevier</p></licence></availability><p scheme="https://loaded-corpus.data.istex.fr/ark:/67375/XBH-HKKZVM7B-M"></p><date>1996</date></publicationStmt><notesStmt><note type="research-article" scheme="https://content-type.data.istex.fr/ark:/67375/XTP-1JC4F85T-7">research-article</note><note type="journal" scheme="https://publication-type.data.istex.fr/ark:/67375/JMC-0GLKJH51-B">journal</note><note type="content">Section title: Research paper</note></notesStmt><sourceDesc><biblStruct type="inbook"><analytic><title level="a">The nucleotide sequence of hydrangea mosaic virus RNA 3 exhibits similarity with the RNA 3 of tobacco streak virus</title><author xml:id="author-0000"><persName><forename type="first">Xin</forename><surname>Ge</surname></persName><note type="biography">Present address: Department of Biological Sciences, University of South Carolina, Columbia, SC 29208, USA.</note><affiliation>Present address: Department of Biological Sciences, University of South Carolina, Columbia, SC 29208, USA.</affiliation><affiliation>Department of Plant Pathology and Physiology, Clemson University, Clemson, SC 29634-0377, USA</affiliation></author><author xml:id="author-0001"><persName><forename type="first">S.W.</forename><surname>Scott</surname></persName><email>sscott@clemson.edu</email><note type="correspondence"><p>Corresponding author. Tel.: + 1 864 656 5745; Fax + 1 864 656 0274</p></note><affiliation>Department of Plant Pathology and Physiology, Clemson University, Clemson, SC 29634-0377, USA</affiliation></author><idno type="istex">E38401E09CAB3D7B2052950BC5328BC8E668C6E7</idno><idno type="ark">ark:/67375/6H6-H71M6TXL-P</idno><idno type="DOI">10.1016/0168-1702(95)01251-6</idno><idno type="PII">0168-1702(95)01251-6</idno></analytic><monogr><title level="j">Virus Research</title><title level="j" type="abbrev">VIRUS</title><idno type="pISSN">0168-1702</idno><idno type="PII">S0168-1702(00)X0005-6</idno><imprint><publisher>ELSEVIER</publisher><date type="published" when="1996"></date><biblScope unit="volume">40</biblScope><biblScope unit="issue">1</biblScope><biblScope unit="page" from="57">57</biblScope><biblScope unit="page" to="63">63</biblScope></imprint></monogr></biblStruct></sourceDesc></fileDesc><profileDesc><creation><date>1996</date></creation><langUsage><language ident="en">en</language></langUsage><abstract xml:lang="en"><p>Abstract: The complete nucleotide sequence of the RNA 3 of hydrangea mosaic virus (HdMV) was determined. It consists of 2268 nucleotides and contains two open reading frames (ORF). ORF 1 encodes for a putative translation product of 293 amino acids which shared 64.9% identity with the 3a protein of tobacco streak virus (TSV). ORF 2 encodes for a putative translation product of 220 amino acids which shared 54.2% identity with the coat protein of TSV. The relationship between the proteins of HdMV and the corresponding proteins of ilarviruses other than TSV was more distant. No zinc-finger-like motif was found in the coat protein of HdMV but the N-terminus of the protein was rich in basic amino acids. Both terminal, non-coding regions of HdMV RNA 3 contained repeated sequences with corresponding homologous fragments in the RNA 3 of TSV. On the basis of the similarities between HdMV and TSV that we detected, we propose that HdMV be included in subgroup 1 of the genus Ilarvirus together with TSV.</p></abstract><textClass><keywords scheme="keyword"><list><head>Keywords</head><item><term>Hydrangea mosaic virus (HdMV)</term></item><item><term>Ilarvirus</term></item><item><term>Bromoviridae</term></item><item><term>Nucleotide sequence</term></item><item><term>Relationship</term></item></list></keywords></textClass></profileDesc><revisionDesc><change when="1996">Published</change></revisionDesc></teiHeader></istex:fulltextTEI><json:item><extension>txt</extension><original>false</original><mimetype>text/plain</mimetype><uri>https://api.istex.fr/ark:/67375/6H6-H71M6TXL-P/fulltext.txt</uri></json:item></fulltext><metadata><istex:metadataXml wicri:clean="Elsevier, elements deleted: tail"><istex:xmlDeclaration>version="1.0" encoding="utf-8"</istex:xmlDeclaration><istex:docType PUBLIC="-//ES//DTD journal article DTD version 4.5.2//EN//XML" URI="art452.dtd" name="istex:docType"></istex:docType><istex:document><converted-article version="4.5.2" docsubtype="fla"><item-info><jid>VIRUS</jid><aid>95012516</aid><ce:pii>0168-1702(95)01251-6</ce:pii><ce:doi>10.1016/0168-1702(95)01251-6</ce:doi><ce:copyright type="unknown" year="1996"></ce:copyright></item-info><head><ce:dochead><ce:textfn>Research paper</ce:textfn></ce:dochead><ce:title>The nucleotide sequence of hydrangea mosaic virus RNA 3 exhibits similarity with the RNA 3 of tobacco streak virus</ce:title><ce:author-group><ce:author><ce:given-name>Xin</ce:given-name><ce:surname>Ge</ce:surname><ce:cross-ref refid="FN1"><ce:sup>1</ce:sup></ce:cross-ref></ce:author><ce:author><ce:given-name>S.W.</ce:given-name><ce:surname>Scott</ce:surname><ce:cross-ref refid="COR1"><ce:sup>∗</ce:sup></ce:cross-ref><ce:e-address>sscott@clemson.edu</ce:e-address></ce:author><ce:affiliation><ce:textfn>Department of Plant Pathology and Physiology, Clemson University, Clemson, SC 29634-0377, USA</ce:textfn></ce:affiliation><ce:correspondence id="COR1"><ce:label>∗</ce:label><ce:text>Corresponding author. Tel.: + 1 864 656 5745; Fax + 1 864 656 0274</ce:text></ce:correspondence><ce:footnote id="FN1"><ce:label>1</ce:label><ce:note-para>Present address: Department of Biological Sciences, University of South Carolina, Columbia, SC 29208, USA.</ce:note-para></ce:footnote></ce:author-group><ce:date-received day="30" month="8" year="1995"></ce:date-received><ce:date-accepted day="4" month="10" year="1995"></ce:date-accepted><ce:abstract><ce:section-title>Abstract</ce:section-title><ce:abstract-sec><ce:simple-para>The complete nucleotide sequence of the RNA 3 of hydrangea mosaic virus (HdMV) was determined. It consists of 2268 nucleotides and contains two open reading frames (ORF). ORF 1 encodes for a putative translation product of 293 amino acids which shared 64.9% identity with the 3a protein of tobacco streak virus (TSV). ORF 2 encodes for a putative translation product of 220 amino acids which shared 54.2% identity with the coat protein of TSV. The relationship between the proteins of HdMV and the corresponding proteins of ilarviruses other than TSV was more distant. No zinc-finger-like motif was found in the coat protein of HdMV but the <ce:italic>N</ce:italic>-terminus of the protein was rich in basic amino acids. Both terminal, non-coding regions of HdMV RNA 3 contained repeated sequences with corresponding homologous fragments in the RNA 3 of TSV. On the basis of the similarities between HdMV and TSV that we detected, we propose that HdMV be included in subgroup 1 of the genus <ce:italic>Ilarvirus</ce:italic> together with TSV.</ce:simple-para></ce:abstract-sec></ce:abstract><ce:keywords><ce:section-title>Keywords</ce:section-title><ce:keyword><ce:text>Hydrangea mosaic virus (HdMV)</ce:text></ce:keyword><ce:keyword><ce:text><ce:italic>Ilarvirus</ce:italic></ce:text></ce:keyword><ce:keyword><ce:text><ce:italic>Bromoviridae</ce:italic></ce:text></ce:keyword><ce:keyword><ce:text>Nucleotide sequence</ce:text></ce:keyword><ce:keyword><ce:text>Relationship</ce:text></ce:keyword></ce:keywords></head></converted-article></istex:document></istex:metadataXml><mods version="3.6"><titleInfo><title>The nucleotide sequence of hydrangea mosaic virus RNA 3 exhibits similarity with the RNA 3 of tobacco streak virus</title></titleInfo><titleInfo type="alternative" contentType="CDATA"><title>The nucleotide sequence of hydrangea mosaic virus RNA 3 exhibits similarity with the RNA 3 of tobacco streak virus</title></titleInfo><name type="personal"><namePart type="given">Xin</namePart><namePart type="family">Ge</namePart><affiliation>Department of Plant Pathology and Physiology, Clemson University, Clemson, SC 29634-0377, USA</affiliation><description>Present address: Department of Biological Sciences, University of South Carolina, Columbia, SC 29208, USA.</description><role><roleTerm type="text">author</roleTerm></role></name><name type="personal"><namePart type="given">S.W.</namePart><namePart type="family">Scott</namePart><affiliation>Department of Plant Pathology and Physiology, Clemson University, Clemson, SC 29634-0377, USA</affiliation><affiliation>E-mail: sscott@clemson.edu</affiliation><description>Corresponding author. Tel.: + 1 864 656 5745; Fax + 1 864 656 0274</description><role><roleTerm type="text">author</roleTerm></role></name><typeOfResource>text</typeOfResource><genre type="research-article" displayLabel="Full-length article" authority="ISTEX" authorityURI="https://content-type.data.istex.fr" valueURI="https://content-type.data.istex.fr/ark:/67375/XTP-1JC4F85T-7">research-article</genre><originInfo><publisher>ELSEVIER</publisher><dateIssued encoding="w3cdtf">1996</dateIssued><copyrightDate encoding="w3cdtf">1996</copyrightDate></originInfo><language><languageTerm type="code" authority="iso639-2b">eng</languageTerm><languageTerm type="code" authority="rfc3066">en</languageTerm></language><abstract lang="en">Abstract: The complete nucleotide sequence of the RNA 3 of hydrangea mosaic virus (HdMV) was determined. It consists of 2268 nucleotides and contains two open reading frames (ORF). ORF 1 encodes for a putative translation product of 293 amino acids which shared 64.9% identity with the 3a protein of tobacco streak virus (TSV). ORF 2 encodes for a putative translation product of 220 amino acids which shared 54.2% identity with the coat protein of TSV. The relationship between the proteins of HdMV and the corresponding proteins of ilarviruses other than TSV was more distant. No zinc-finger-like motif was found in the coat protein of HdMV but the N-terminus of the protein was rich in basic amino acids. Both terminal, non-coding regions of HdMV RNA 3 contained repeated sequences with corresponding homologous fragments in the RNA 3 of TSV. On the basis of the similarities between HdMV and TSV that we detected, we propose that HdMV be included in subgroup 1 of the genus Ilarvirus together with TSV.</abstract><note type="content">Section title: Research paper</note><subject><genre>Keywords</genre><topic>Hydrangea mosaic virus (HdMV)</topic><topic>Ilarvirus</topic><topic>Bromoviridae</topic><topic>Nucleotide sequence</topic><topic>Relationship</topic></subject><relatedItem type="host"><titleInfo><title>Virus Research</title></titleInfo><titleInfo type="abbreviated"><title>VIRUS</title></titleInfo><genre type="journal" authority="ISTEX" authorityURI="https://publication-type.data.istex.fr" valueURI="https://publication-type.data.istex.fr/ark:/67375/JMC-0GLKJH51-B">journal</genre><originInfo><publisher>ELSEVIER</publisher><dateIssued encoding="w3cdtf">1996</dateIssued></originInfo><identifier type="ISSN">0168-1702</identifier><identifier type="PII">S0168-1702(00)X0005-6</identifier><part><date>1996</date><detail type="volume"><number>40</number><caption>vol.</caption></detail><detail type="issue"><number>1</number><caption>no.</caption></detail><extent unit="issue-pages"><start>1</start><end>111</end></extent><extent unit="pages"><start>57</start><end>63</end></extent></part></relatedItem><identifier type="istex">E38401E09CAB3D7B2052950BC5328BC8E668C6E7</identifier><identifier type="ark">ark:/67375/6H6-H71M6TXL-P</identifier><identifier type="DOI">10.1016/0168-1702(95)01251-6</identifier><identifier type="PII">0168-1702(95)01251-6</identifier><recordInfo><recordContentSource authority="ISTEX" authorityURI="https://loaded-corpus.data.istex.fr" valueURI="https://loaded-corpus.data.istex.fr/ark:/67375/XBH-HKKZVM7B-M">elsevier</recordContentSource></recordInfo></mods><json:item><extension>json</extension><original>false</original><mimetype>application/json</mimetype><uri>https://api.istex.fr/ark:/67375/6H6-H71M6TXL-P/record.json</uri></json:item></metadata></istex></record>Pour manipuler ce document sous Unix (Dilib)
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|texte= The nucleotide sequence of hydrangea mosaic virus RNA 3 exhibits similarity with the RNA 3 of tobacco streak virus
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