Detecting transmission and reassortment events for influenza A viruses with genotype profile method
Identifieur interne : 000C40 ( Pmc/Curation ); précédent : 000C39; suivant : 000C41Detecting transmission and reassortment events for influenza A viruses with genotype profile method
Auteurs : Changzheng Dong [République populaire de Chine] ; Liya Ying [République populaire de Chine] ; Dongfang Yuan [République populaire de Chine]Source :
- Virology Journal [ 1743-422X ] ; 2011.
Abstract
Evolutionary events of transmission and reassortment for influenza A viruses were traditionally detected by phylogenetic analysis for influenza viruses' eight gene segments. Because the phylogenetic analysis can be complex, we developed genotype profile method which packaged the phylogenetic algorithms to analyze combination patterns of gene segments and integrated epidemiology knowledge. With the method, the analysis of reassortment and transmission becomes a simple and reliable process that combines genotypes, which is identical for the biological process of the virus. An application called IVEE that implements the method is available for all academic users to apply the method
Url:
DOI: 10.1186/1743-422X-8-395
PubMed: 21824442
PubMed Central: 3162547
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Detecting transmission and reassortment events for influenza A viruses with genotype profile method</title><author><name sortKey="Dong, Changzheng" sort="Dong, Changzheng" uniqKey="Dong C" first="Changzheng" last="Dong">Changzheng Dong</name><affiliation wicri:level="1"><nlm:aff id="I1">School of Medicine, Ningbo University, Ningbo, 315211, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>School of Medicine, Ningbo University, Ningbo, 315211</wicri:regionArea></affiliation></author><author><name sortKey="Ying, Liya" sort="Ying, Liya" uniqKey="Ying L" first="Liya" last="Ying">Liya Ying</name><affiliation wicri:level="1"><nlm:aff id="I1">School of Medicine, Ningbo University, Ningbo, 315211, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>School of Medicine, Ningbo University, Ningbo, 315211</wicri:regionArea></affiliation></author><author><name sortKey="Yuan, Dongfang" sort="Yuan, Dongfang" uniqKey="Yuan D" first="Dongfang" last="Yuan">Dongfang Yuan</name><affiliation wicri:level="1"><nlm:aff id="I1">School of Medicine, Ningbo University, Ningbo, 315211, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>School of Medicine, Ningbo University, Ningbo, 315211</wicri:regionArea></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">21824442</idno><idno type="pmc">3162547</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3162547</idno><idno type="RBID">PMC:3162547</idno><idno type="doi">10.1186/1743-422X-8-395</idno><date when="2011">2011</date><idno type="wicri:Area/Pmc/Corpus">000C40</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Corpus" wicri:corpus="PMC">000C40</idno><idno type="wicri:Area/Pmc/Curation">000C40</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Curation">000C40</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Detecting transmission and reassortment events for influenza A viruses with genotype profile method</title><author><name sortKey="Dong, Changzheng" sort="Dong, Changzheng" uniqKey="Dong C" first="Changzheng" last="Dong">Changzheng Dong</name><affiliation wicri:level="1"><nlm:aff id="I1">School of Medicine, Ningbo University, Ningbo, 315211, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>School of Medicine, Ningbo University, Ningbo, 315211</wicri:regionArea></affiliation></author><author><name sortKey="Ying, Liya" sort="Ying, Liya" uniqKey="Ying L" first="Liya" last="Ying">Liya Ying</name><affiliation wicri:level="1"><nlm:aff id="I1">School of Medicine, Ningbo University, Ningbo, 315211, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>School of Medicine, Ningbo University, Ningbo, 315211</wicri:regionArea></affiliation></author><author><name sortKey="Yuan, Dongfang" sort="Yuan, Dongfang" uniqKey="Yuan D" first="Dongfang" last="Yuan">Dongfang Yuan</name><affiliation wicri:level="1"><nlm:aff id="I1">School of Medicine, Ningbo University, Ningbo, 315211, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>School of Medicine, Ningbo University, Ningbo, 315211</wicri:regionArea></affiliation></author></analytic><series><title level="j">Virology Journal</title><idno type="eISSN">1743-422X</idno><imprint><date when="2011">2011</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>Evolutionary events of transmission and reassortment for influenza A viruses were traditionally detected by phylogenetic analysis for influenza viruses' eight gene segments. Because the phylogenetic analysis can be complex, we developed genotype profile method which packaged the phylogenetic algorithms to analyze combination patterns of gene segments and integrated epidemiology knowledge. With the method, the analysis of reassortment and transmission becomes a simple and reliable process that combines genotypes, which is identical for the biological process of the virus. An application called IVEE that implements the method is available for all academic users to apply the method <ext-link ext-link-type="uri" xlink:href="http://snptransformer.sourceforge.net">http://snptransformer.sourceforge.net</ext-link>. 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<front><journal-meta><journal-id journal-id-type="nlm-ta">Virol J</journal-id><journal-title-group><journal-title>Virology Journal</journal-title></journal-title-group><issn pub-type="epub">1743-422X</issn><publisher><publisher-name>BioMed Central</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="pmid">21824442</article-id><article-id pub-id-type="pmc">3162547</article-id><article-id pub-id-type="publisher-id">1743-422X-8-395</article-id><article-id pub-id-type="doi">10.1186/1743-422X-8-395</article-id><article-categories><subj-group subj-group-type="heading"><subject>Methodology</subject></subj-group></article-categories><title-group><article-title>Detecting transmission and reassortment events for influenza A viruses with genotype profile method</article-title></title-group><contrib-group><contrib contrib-type="author" corresp="yes" equal-contrib="yes" id="A1"><name><surname>Dong</surname><given-names>Changzheng</given-names></name><xref ref-type="aff" rid="I1">1</xref><email>dongchangzheng@nbu.edu.cn</email></contrib><contrib contrib-type="author" equal-contrib="yes" id="A2"><name><surname>Ying</surname><given-names>Liya</given-names></name><xref ref-type="aff" rid="I1">1</xref><email>yingliya86@yahoo.cn</email></contrib><contrib contrib-type="author" id="A3"><name><surname>Yuan</surname><given-names>Dongfang</given-names></name><xref ref-type="aff" rid="I1">1</xref><email>yuandongfang1987@yahoo.com.cn</email></contrib></contrib-group><aff id="I1"><label>1</label>School of Medicine, Ningbo University, Ningbo, 315211, China</aff><pub-date pub-type="collection"><year>2011</year></pub-date><pub-date pub-type="epub"><day>9</day><month>8</month><year>2011</year></pub-date><volume>8</volume><fpage>395</fpage><lpage>395</lpage><history><date date-type="received"><day>11</day><month>3</month><year>2011</year></date><date date-type="accepted"><day>9</day><month>8</month><year>2011</year></date></history><permissions><copyright-statement>Copyright ©2011 Dong et al; licensee BioMed Central Ltd.</copyright-statement><copyright-year>2011</copyright-year><copyright-holder>Dong et al; licensee BioMed Central Ltd.</copyright-holder><license license-type="open-access" xlink:href="http://creativecommons.org/licenses/by/2.0"><license-p>This is an Open Access article distributed under the terms of the Creative Commons Attribution License (<ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by/2.0">http://creativecommons.org/licenses/by/2.0</ext-link>), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p></license></permissions><self-uri xlink:href="http://www.virologyj.com/content/8/1/395"></self-uri><abstract><p>Evolutionary events of transmission and reassortment for influenza A viruses were traditionally detected by phylogenetic analysis for influenza viruses' eight gene segments. Because the phylogenetic analysis can be complex, we developed genotype profile method which packaged the phylogenetic algorithms to analyze combination patterns of gene segments and integrated epidemiology knowledge. With the method, the analysis of reassortment and transmission becomes a simple and reliable process that combines genotypes, which is identical for the biological process of the virus. An application called IVEE that implements the method is available for all academic users to apply the method <ext-link ext-link-type="uri" xlink:href="http://snptransformer.sourceforge.net">http://snptransformer.sourceforge.net</ext-link>. Furthermore, we found that a previous summary of the reassortment events in swine influenza A viruses may be inaccurate.</p></abstract><kwd-group><kwd>influenza A virus</kwd><kwd>genotype</kwd><kwd>genotype profile method</kwd><kwd>reassortment</kwd><kwd>transmission</kwd><kwd>phylogenetic analysis</kwd><kwd>gene segment</kwd><kwd>IVEE</kwd></kwd-group></article-meta></front></pmc></record>Pour manipuler ce document sous Unix (Dilib)
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