Serveur d'exploration Covid (26 mars)

Attention, ce site est en cours de développement !
Attention, site généré par des moyens informatiques à partir de corpus bruts.
Les informations ne sont donc pas validées.

Stimulation of −1 programmed ribosomal frameshifting by a metabolite-responsive RNA pseudoknot

Identifieur interne : 000736 ( Pmc/Corpus ); précédent : 000735; suivant : 000737

Stimulation of −1 programmed ribosomal frameshifting by a metabolite-responsive RNA pseudoknot

Auteurs : Ming-Yuan Chou ; Szu-Chieh Lin ; Kung-Yao Chang

Source :

RBID : PMC:2874175

Abstract

Specific recognition of metabolites by functional RNA motifs within mRNAs has emerged as a crucial regulatory strategy for feedback control of biochemical reactions. Such riboswitches have been demonstrated to regulate different gene expression processes, including transcriptional termination and translational initiation in prokaryotic cells, as well as splicing in eukaryotic cells. The regulatory process is usually mediated by modulating the accessibility of specific sequence information of the expression platforms via metabolite-induced RNA conformational rearrangement. In eukaryotic systems, viral and the more limited number of cellular decoding −1 programmed ribosomal frameshifting (PRF) are commonly promoted by a 3′ mRNA pseudoknot. In addition, such −1 PRF is generally constitutive rather than being regulatory, and usually results in a fixed ratio of products. We report here an RNA pseudoknot capable of stimulating −1 PRF whose efficiency can be tuned in response to the concentration of S-adenosylhomocysteine (SAH), and the improvement of its frameshifting efficiency by RNA engineering. In addition to providing an alternative approach for small-molecule regulation of gene expression in eukaryotic cells, such a metabolite-responsive pseudoknot suggests a plausible mechanism for metabolite-driven translational regulation of gene expression in eukaryotic systems.


Url:
DOI: 10.1261/rna.1922410
PubMed: 20435898
PubMed Central: 2874175

Links to Exploration step

PMC:2874175

Le document en format XML

<record>
<TEI>
<teiHeader>
<fileDesc>
<titleStmt>
<title xml:lang="en">Stimulation of −1 programmed ribosomal frameshifting by a metabolite-responsive RNA pseudoknot</title>
<author>
<name sortKey="Chou, Ming Yuan" sort="Chou, Ming Yuan" uniqKey="Chou M" first="Ming-Yuan" last="Chou">Ming-Yuan Chou</name>
<affiliation>
<nlm:aff id="aff1">Institute of Biochemistry, National Chung-Hsing University, Taichung, 402 Taiwan</nlm:aff>
</affiliation>
</author>
<author>
<name sortKey="Lin, Szu Chieh" sort="Lin, Szu Chieh" uniqKey="Lin S" first="Szu-Chieh" last="Lin">Szu-Chieh Lin</name>
<affiliation>
<nlm:aff id="aff1">Institute of Biochemistry, National Chung-Hsing University, Taichung, 402 Taiwan</nlm:aff>
</affiliation>
</author>
<author>
<name sortKey="Chang, Kung Yao" sort="Chang, Kung Yao" uniqKey="Chang K" first="Kung-Yao" last="Chang">Kung-Yao Chang</name>
<affiliation>
<nlm:aff id="aff1">Institute of Biochemistry, National Chung-Hsing University, Taichung, 402 Taiwan</nlm:aff>
</affiliation>
</author>
</titleStmt>
<publicationStmt>
<idno type="wicri:source">PMC</idno>
<idno type="pmid">20435898</idno>
<idno type="pmc">2874175</idno>
<idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2874175</idno>
<idno type="RBID">PMC:2874175</idno>
<idno type="doi">10.1261/rna.1922410</idno>
<date when="2010">2010</date>
<idno type="wicri:Area/Pmc/Corpus">000736</idno>
<idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Corpus" wicri:corpus="PMC">000736</idno>
</publicationStmt>
<sourceDesc>
<biblStruct>
<analytic>
<title xml:lang="en" level="a" type="main">Stimulation of −1 programmed ribosomal frameshifting by a metabolite-responsive RNA pseudoknot</title>
<author>
<name sortKey="Chou, Ming Yuan" sort="Chou, Ming Yuan" uniqKey="Chou M" first="Ming-Yuan" last="Chou">Ming-Yuan Chou</name>
<affiliation>
<nlm:aff id="aff1">Institute of Biochemistry, National Chung-Hsing University, Taichung, 402 Taiwan</nlm:aff>
</affiliation>
</author>
<author>
<name sortKey="Lin, Szu Chieh" sort="Lin, Szu Chieh" uniqKey="Lin S" first="Szu-Chieh" last="Lin">Szu-Chieh Lin</name>
<affiliation>
<nlm:aff id="aff1">Institute of Biochemistry, National Chung-Hsing University, Taichung, 402 Taiwan</nlm:aff>
</affiliation>
</author>
<author>
<name sortKey="Chang, Kung Yao" sort="Chang, Kung Yao" uniqKey="Chang K" first="Kung-Yao" last="Chang">Kung-Yao Chang</name>
<affiliation>
<nlm:aff id="aff1">Institute of Biochemistry, National Chung-Hsing University, Taichung, 402 Taiwan</nlm:aff>
</affiliation>
</author>
</analytic>
<series>
<title level="j">RNA</title>
<idno type="ISSN">1355-8382</idno>
<idno type="eISSN">1469-9001</idno>
<imprint>
<date when="2010">2010</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc>
<textClass></textClass>
</profileDesc>
</teiHeader>
<front>
<div type="abstract" xml:lang="en">
<p>Specific recognition of metabolites by functional RNA motifs within mRNAs has emerged as a crucial regulatory strategy for feedback control of biochemical reactions. Such riboswitches have been demonstrated to regulate different gene expression processes, including transcriptional termination and translational initiation in prokaryotic cells, as well as splicing in eukaryotic cells. The regulatory process is usually mediated by modulating the accessibility of specific sequence information of the expression platforms via metabolite-induced RNA conformational rearrangement. In eukaryotic systems, viral and the more limited number of cellular decoding −1 programmed ribosomal frameshifting (PRF) are commonly promoted by a 3′ mRNA pseudoknot. In addition, such −1 PRF is generally constitutive rather than being regulatory, and usually results in a fixed ratio of products. We report here an RNA pseudoknot capable of stimulating −1 PRF whose efficiency can be tuned in response to the concentration of
<italic>S</italic>
-adenosylhomocysteine (SAH), and the improvement of its frameshifting efficiency by RNA engineering. In addition to providing an alternative approach for small-molecule regulation of gene expression in eukaryotic cells, such a metabolite-responsive pseudoknot suggests a plausible mechanism for metabolite-driven translational regulation of gene expression in eukaryotic systems.</p>
</div>
</front>
</TEI>
<pmc article-type="research-article">
<pmc-comment>The publisher of this article does not allow downloading of the full text in XML form.</pmc-comment>
<front>
<journal-meta>
<journal-id journal-id-type="nlm-ta">RNA</journal-id>
<journal-id journal-id-type="publisher-id">RNA</journal-id>
<journal-title-group>
<journal-title>RNA</journal-title>
</journal-title-group>
<issn pub-type="ppub">1355-8382</issn>
<issn pub-type="epub">1469-9001</issn>
<publisher>
<publisher-name>Cold Spring Harbor Laboratory Press</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="pmid">20435898</article-id>
<article-id pub-id-type="pmc">2874175</article-id>
<article-id pub-id-type="medline">9509184</article-id>
<article-id pub-id-type="publisher-id">RA</article-id>
<article-id pub-id-type="doi">10.1261/rna.1922410</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Article</subject>
</subj-group>
</article-categories>
<title-group>
<article-title>Stimulation of −1 programmed ribosomal frameshifting by a metabolite-responsive RNA pseudoknot</article-title>
<alt-title alt-title-type="left-running">Chou et al.</alt-title>
<alt-title alt-title-type="right-running">−1 PRF induced by a metabolite</alt-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname>Chou</surname>
<given-names>Ming-Yuan</given-names>
</name>
<xref ref-type="aff" rid="aff1"></xref>
<xref ref-type="author-notes" rid="fn1">1</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Lin</surname>
<given-names>Szu-Chieh</given-names>
</name>
<xref ref-type="aff" rid="aff1"></xref>
<xref ref-type="author-notes" rid="fn1">1</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Chang</surname>
<given-names>Kung-Yao</given-names>
</name>
<xref ref-type="aff" rid="aff1"></xref>
</contrib>
</contrib-group>
<aff id="aff1">Institute of Biochemistry, National Chung-Hsing University, Taichung, 402 Taiwan</aff>
<author-notes>
<fn fn-type="equal" id="fn1">
<label>1</label>
<p>These authors contributed equally to this work.</p>
</fn>
<fn>
<p>
<bold>Reprint requests to:</bold>
Kung-Yao Chang, Institute of Biochemistry, National Chung-Hsing University, 250 Kuo-Kung Road, Taichung, 402 Taiwan; e-mail:
<email>kychang@dragon.nchu.edu.tw</email>
; fax: 886-4-22853487.</p>
</fn>
</author-notes>
<pub-date pub-type="ppub">
<month>6</month>
<year>2010</year>
</pub-date>
<volume>16</volume>
<issue>6</issue>
<fpage>1236</fpage>
<lpage>1244</lpage>
<history>
<date date-type="received">
<day>10</day>
<month>9</month>
<year>2009</year>
</date>
<date date-type="accepted">
<day>2</day>
<month>3</month>
<year>2010</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright © 2010 RNA Society</copyright-statement>
</permissions>
<self-uri xlink:title="pdf" xlink:type="simple" xlink:href="1236.pdf"></self-uri>
<abstract>
<p>Specific recognition of metabolites by functional RNA motifs within mRNAs has emerged as a crucial regulatory strategy for feedback control of biochemical reactions. Such riboswitches have been demonstrated to regulate different gene expression processes, including transcriptional termination and translational initiation in prokaryotic cells, as well as splicing in eukaryotic cells. The regulatory process is usually mediated by modulating the accessibility of specific sequence information of the expression platforms via metabolite-induced RNA conformational rearrangement. In eukaryotic systems, viral and the more limited number of cellular decoding −1 programmed ribosomal frameshifting (PRF) are commonly promoted by a 3′ mRNA pseudoknot. In addition, such −1 PRF is generally constitutive rather than being regulatory, and usually results in a fixed ratio of products. We report here an RNA pseudoknot capable of stimulating −1 PRF whose efficiency can be tuned in response to the concentration of
<italic>S</italic>
-adenosylhomocysteine (SAH), and the improvement of its frameshifting efficiency by RNA engineering. In addition to providing an alternative approach for small-molecule regulation of gene expression in eukaryotic cells, such a metabolite-responsive pseudoknot suggests a plausible mechanism for metabolite-driven translational regulation of gene expression in eukaryotic systems.</p>
</abstract>
<kwd-group>
<title>Keywords:</title>
<kwd>−1 ribosomal frameshifting</kwd>
<kwd>riboswitch</kwd>
<kwd>pseudoknot</kwd>
</kwd-group>
</article-meta>
</front>
</pmc>
</record>

Pour manipuler ce document sous Unix (Dilib)

EXPLOR_STEP=$WICRI_ROOT/Wicri/Sante/explor/CovidV2/Data/Pmc/Corpus
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000736 | SxmlIndent | more

Ou

HfdSelect -h $EXPLOR_AREA/Data/Pmc/Corpus/biblio.hfd -nk 000736 | SxmlIndent | more

Pour mettre un lien sur cette page dans le réseau Wicri

{{Explor lien
   |wiki=    Wicri/Sante
   |area=    CovidV2
   |flux=    Pmc
   |étape=   Corpus
   |type=    RBID
   |clé=     PMC:2874175
   |texte=   Stimulation of −1 programmed ribosomal frameshifting by a metabolite-responsive RNA pseudoknot
}}

Pour générer des pages wiki

HfdIndexSelect -h $EXPLOR_AREA/Data/Pmc/Corpus/RBID.i   -Sk "pubmed:20435898" \
       | HfdSelect -Kh $EXPLOR_AREA/Data/Pmc/Corpus/biblio.hfd   \
       | NlmPubMed2Wicri -a CovidV2 

Wicri

This area was generated with Dilib version V0.6.33.
Data generation: Sat Mar 28 17:51:24 2020. Site generation: Sun Jan 31 15:35:48 2021