Transcriptome sequencing and development of an expression microarray platform for the domestic ferret
Identifieur interne : 001453 ( Main/Merge ); précédent : 001452; suivant : 001454Transcriptome sequencing and development of an expression microarray platform for the domestic ferret
Auteurs : Carl E. Bruder [États-Unis] ; Suxia Yao [États-Unis] ; Francis Larson [États-Unis] ; Jeremy V. Camp [États-Unis] ; Ronald Tapp [États-Unis] ; Alexis Mcbrayer [États-Unis] ; Nicholas Powers [États-Unis] ; Willy Valdivia Granda [États-Unis] ; Colleen B. Jonsson [États-Unis]Source :
- BMC Genomics [ 1471-2164 ] ; 2010.
Abstract
The ferret (
We produced more than 500000 sequence reads that were assembled into 16000 partial ferret genes. These genes were combined with the available ferret sequences in the GenBank to develop a ferret specific microarray platform. Using this array, we detected tissue specific expression patterns which were confirmed by quantitative real time PCR assays. We also present a set of 41 ferret genes with even transcription profiles across the tested tissues, indicating their usefulness as housekeeping genes.
The tools developed in this study allow for functional genomic analysis and make further development of reagents for the ferret model possible.
The online version of this article (doi:10.1186/1471-2164-11-251) contains supplementary material, which is available to authorized users.
Url:
DOI: 10.1186/1471-2164-11-251
PubMed: 20403183
PubMed Central: 2873475
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Bruder</name><affiliation wicri:level="2"><nlm:aff id="Aff1"><institution-wrap><institution-id institution-id-type="GRID">grid.454225.0</institution-id><institution-id institution-id-type="ISNI">0000000403768349</institution-id><institution>Southern Research Institute,</institution></institution-wrap>2000 Ninth Ave South, Birmingham, AL 35205 USA</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">Alabama</region></placeName><wicri:cityArea>2000 Ninth Ave South, Birmingham</wicri:cityArea></affiliation></author><author><name sortKey="Yao, Suxia" sort="Yao, Suxia" uniqKey="Yao S" first="Suxia" last="Yao">Suxia Yao</name><affiliation wicri:level="2"><nlm:aff id="Aff1"><institution-wrap><institution-id institution-id-type="GRID">grid.454225.0</institution-id><institution-id institution-id-type="ISNI">0000000403768349</institution-id><institution>Southern Research Institute,</institution></institution-wrap>2000 Ninth Ave South, Birmingham, AL 35205 USA</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">Alabama</region></placeName><wicri:cityArea>2000 Ninth Ave South, Birmingham</wicri:cityArea></affiliation></author><author><name sortKey="Larson, Francis" sort="Larson, Francis" uniqKey="Larson F" first="Francis" last="Larson">Francis Larson</name><affiliation wicri:level="2"><nlm:aff id="Aff2">Orion Integrated Biosciences Inc, 265 Centre Ave, Suite 1R, New Rochelle, NY 10805 USA</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">État de New York</region></placeName><wicri:cityArea>Orion Integrated Biosciences Inc, 265 Centre Ave, Suite 1R, New Rochelle</wicri:cityArea></affiliation></author><author><name sortKey="Camp, Jeremy V" sort="Camp, Jeremy V" uniqKey="Camp J" first="Jeremy V" last="Camp">Jeremy V. 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Jonsson</name><affiliation wicri:level="2"><nlm:aff id="Aff1"><institution-wrap><institution-id institution-id-type="GRID">grid.454225.0</institution-id><institution-id institution-id-type="ISNI">0000000403768349</institution-id><institution>Southern Research Institute,</institution></institution-wrap>2000 Ninth Ave South, Birmingham, AL 35205 USA</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">Alabama</region></placeName><wicri:cityArea>2000 Ninth Ave South, Birmingham</wicri:cityArea></affiliation><affiliation><nlm:aff id="Aff3"><institution-wrap><institution-id institution-id-type="GRID">grid.266623.5</institution-id><institution-id institution-id-type="ISNI">0000000121131622</institution-id><institution>Center for Predictive Medicine For Biodefense and Emerging Infectious Disease,</institution><institution>University of Louisville,</institution></institution-wrap>KY 40292 USA</nlm:aff></affiliation></author></analytic><series><title level="j">BMC Genomics</title><idno type="eISSN">1471-2164</idno><imprint><date when="2010">2010</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><sec><title>Background</title><p>The ferret (<italic>Mustela putorius furo</italic>) represents an attractive animal model for the study of respiratory diseases, including influenza. Despite its importance for biomedical research, the number of reagents for molecular and immunological analysis is restricted. We present here a parallel sequencing effort to produce an extensive EST (expressed sequence tags) dataset derived from a normalized ferret cDNA library made from mRNA from ferret blood, liver, lung, spleen and brain.</p></sec><sec><title>Results</title><p>We produced more than 500000 sequence reads that were assembled into 16000 partial ferret genes. These genes were combined with the available ferret sequences in the GenBank to develop a ferret specific microarray platform. Using this array, we detected tissue specific expression patterns which were confirmed by quantitative real time PCR assays. We also present a set of 41 ferret genes with even transcription profiles across the tested tissues, indicating their usefulness as housekeeping genes.</p></sec><sec><title>Conclusion</title><p>The tools developed in this study allow for functional genomic analysis and make further development of reagents for the ferret model possible.</p></sec><sec><title>Electronic supplementary material</title><p>The online version of this article (doi:10.1186/1471-2164-11-251) contains supplementary material, which is available to authorized users.</p></sec></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Chu, Yk" uniqKey="Chu Y">YK Chu</name></author><author><name sortKey="Ali, Gd" uniqKey="Ali G">GD Ali</name></author><author><name sortKey="Jia, F" uniqKey="Jia F">F Jia</name></author><author><name sortKey="Li, Q" uniqKey="Li Q">Q Li</name></author><author><name sortKey="Kelvin, D" uniqKey="Kelvin D">D Kelvin</name></author><author><name 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uniqKey="Paglierani M">M Paglierani</name></author><author><name sortKey="Distante, V" uniqKey="Distante V">V Distante</name></author><author><name sortKey="Pazzagli, M" uniqKey="Pazzagli M">M Pazzagli</name></author><author><name sortKey="Bustin, Sa" uniqKey="Bustin S">SA Bustin</name></author><author><name sortKey="Orlando, C" uniqKey="Orlando C">C Orlando</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Huang, X" uniqKey="Huang X">X Huang</name></author><author><name sortKey="Madan, A" uniqKey="Madan A">A Madan</name></author></analytic></biblStruct></listBibl></div1></back></TEI></record>Pour manipuler ce document sous Unix (Dilib)
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