C-ME: A 3D Community-Based, Real-Time Collaboration Tool for Scientific Research and Training
Identifieur interne : 000E42 ( Main/Exploration ); précédent : 000E41; suivant : 000E43C-ME: A 3D Community-Based, Real-Time Collaboration Tool for Scientific Research and Training
Auteurs : Anand Kolatkar [États-Unis] ; Kevin Kennedy [États-Unis] ; Dan Halabuk [États-Unis] ; Josh Kunken [États-Unis] ; Dena Marrinucci [États-Unis] ; Kelly Bethel [États-Unis] ; Rodney Guzman [États-Unis] ; Tim Huckaby [États-Unis] ; Peter Kuhn [États-Unis]Source :
- PLoS ONE [ 1932-6203 ] ; 2008.
Abstract
The need for effective collaboration tools is growing as multidisciplinary proteome-wide projects and distributed research teams become more common. The resulting data is often quite disparate, stored in separate locations, and not contextually related. Collaborative Molecular Modeling Environment (C-ME) is an interactive community-based collaboration system that allows researchers to organize information, visualize data on a two-dimensional (2-D) or three-dimensional (3-D) basis, and share and manage that information with collaborators in real time. C-ME stores the information in industry-standard databases that are immediately accessible by appropriate permission within the computer network directory service or anonymously across the internet through the C-ME application or through a web browser. The system addresses two important aspects of collaboration: context and information management. C-ME allows a researcher to use a 3-D atomic structure model or a 2-D image as a contextual basis on which to attach and share annotations to specific atoms or molecules or to specific regions of a 2-D image. These annotations provide additional information about the atomic structure or image data that can then be evaluated, amended or added to by other project members.
Url:
DOI: 10.1371/journal.pone.0001621
PubMed: 18286178
PubMed Central: 2229842
Affiliations:
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id="aff3"><addr-line>Interknowlogy, Carlsbad, California, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Interknowlogy, Carlsbad, California</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Kuhn, Peter" sort="Kuhn, Peter" uniqKey="Kuhn P" first="Peter" last="Kuhn">Peter Kuhn</name><affiliation wicri:level="2"><nlm:aff id="aff1"><addr-line>Department of Cell Biology, The Scripps Research Institute, La Jolla, California, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Cell Biology, The Scripps Research Institute, La Jolla, California</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author></analytic><series><title level="j">PLoS ONE</title><idno type="eISSN">1932-6203</idno><imprint><date when="2008">2008</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>The need for effective collaboration tools is growing as multidisciplinary proteome-wide projects and distributed research teams become more common. The resulting data is often quite disparate, stored in separate locations, and not contextually related. Collaborative Molecular Modeling Environment (C-ME) is an interactive community-based collaboration system that allows researchers to organize information, visualize data on a two-dimensional (2-D) or three-dimensional (3-D) basis, and share and manage that information with collaborators in real time. C-ME stores the information in industry-standard databases that are immediately accessible by appropriate permission within the computer network directory service or anonymously across the internet through the C-ME application or through a web browser. The system addresses two important aspects of collaboration: context and information management. C-ME allows a researcher to use a 3-D atomic structure model or a 2-D image as a contextual basis on which to attach and share annotations to specific atoms or molecules or to specific regions of a 2-D image. These annotations provide additional information about the atomic structure or image data that can then be evaluated, amended or added to by other project members.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Bly, S" uniqKey="Bly S">S Bly</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Chin, G" uniqKey="Chin G">G Chin</name></author><author><name sortKey="Lansing, Cs" uniqKey="Lansing C">CS Lansing</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Beltrao, P" uniqKey="Beltrao P">P Beltrao</name></author><author><name sortKey="Kiel, C" uniqKey="Kiel C">C Kiel</name></author><author><name sortKey="Serrano, L" uniqKey="Serrano L">L Serrano</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Richardson, Dc" uniqKey="Richardson D">DC Richardson</name></author><author><name sortKey="Richardson, Js" uniqKey="Richardson J">JS Richardson</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Bourne, Pe" uniqKey="Bourne P">PE Bourne</name></author><author><name sortKey="Gribskov, M" uniqKey="Gribskov M">M Gribskov</name></author><author><name sortKey="Johnson, G" uniqKey="Johnson G">G Johnson</name></author><author><name sortKey="Moreland, J" uniqKey="Moreland J">J Moreland</name></author><author><name sortKey="Weissig, W" uniqKey="Weissig W">W Weissig</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Bhandarkar, M" uniqKey="Bhandarkar M">M Bhandarkar</name></author><author><name sortKey="Budescu, G" uniqKey="Budescu G">G Budescu</name></author><author><name sortKey="Humphrey, Wf" uniqKey="Humphrey W">WF Humphrey</name></author><author><name sortKey="Izaguirre, Ja" uniqKey="Izaguirre J">JA Izaguirre</name></author><author><name sortKey="Izrailev, S" uniqKey="Izrailev S">S Izrailev</name></author><author><name sortKey="Kale, Lv" uniqKey="Kale L">LV Kalé</name></author><author><name sortKey="Kosztin, D" uniqKey="Kosztin D">D Kosztin</name></author><author><name sortKey="Molnar, F" uniqKey="Molnar F">F Molnar</name></author><author><name sortKey="Phillips, Jc" uniqKey="Phillips J">JC Phillips</name></author><author><name sortKey="Schulten, K" uniqKey="Schulten K">K Schulten</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Myers, Jd" uniqKey="Myers J">JD Myers</name></author><author><name sortKey="Peterson, M" uniqKey="Peterson M">M Peterson</name></author><author><name sortKey="Saripalli, Kp" uniqKey="Saripalli K">KP Saripalli</name></author><author><name sortKey="Talbott, T" uniqKey="Talbott T">T Talbott</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Abagyan, R" uniqKey="Abagyan R">R Abagyan</name></author><author><name sortKey="Lee, Wh" uniqKey="Lee W">WH Lee</name></author><author><name sortKey="Raush, E" uniqKey="Raush E">E Raush</name></author><author><name sortKey="Budagyan, L" uniqKey="Budagyan L">L Budagyan</name></author><author><name sortKey="Totrov, M" uniqKey="Totrov M">M Totrov</name></author><author><name sortKey="Sundstrom, M" uniqKey="Sundstrom M">M Sundstrom</name></author><author><name sortKey="Marsden, Bd" uniqKey="Marsden B">BD Marsden</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Petzold, C" uniqKey="Petzold C">C Petzold</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Khamsi, R" uniqKey="Khamsi R">R Khamsi</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Tapscott, D" uniqKey="Tapscott D">D Tapscott</name></author><author><name sortKey="Williams, Ad" uniqKey="Williams A">AD Williams</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Delano, Wl" uniqKey="Delano W">WL DeLano</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Emsley, P" uniqKey="Emsley P">P Emsley</name></author><author><name sortKey="Cowtan, K" uniqKey="Cowtan K">K Cowtan</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>États-Unis</li></country><region><li>Californie</li></region></list><tree><country name="États-Unis"><region name="Californie"><name sortKey="Kolatkar, Anand" sort="Kolatkar, Anand" uniqKey="Kolatkar A" first="Anand" last="Kolatkar">Anand Kolatkar</name></region><name sortKey="Bethel, Kelly" sort="Bethel, Kelly" uniqKey="Bethel K" first="Kelly" last="Bethel">Kelly Bethel</name><name sortKey="Guzman, Rodney" sort="Guzman, Rodney" uniqKey="Guzman R" first="Rodney" last="Guzman">Rodney Guzman</name><name sortKey="Halabuk, Dan" sort="Halabuk, Dan" uniqKey="Halabuk D" first="Dan" last="Halabuk">Dan Halabuk</name><name sortKey="Huckaby, Tim" sort="Huckaby, Tim" uniqKey="Huckaby T" first="Tim" last="Huckaby">Tim Huckaby</name><name sortKey="Kennedy, Kevin" sort="Kennedy, Kevin" uniqKey="Kennedy K" first="Kevin" last="Kennedy">Kevin Kennedy</name><name sortKey="Kuhn, Peter" sort="Kuhn, Peter" uniqKey="Kuhn P" first="Peter" last="Kuhn">Peter Kuhn</name><name sortKey="Kunken, Josh" sort="Kunken, Josh" uniqKey="Kunken J" first="Josh" last="Kunken">Josh Kunken</name><name sortKey="Marrinucci, Dena" sort="Marrinucci, Dena" uniqKey="Marrinucci D" first="Dena" last="Marrinucci">Dena Marrinucci</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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