C-ME: A 3D Community-Based, Real-Time Collaboration Tool for Scientific Research and Training
Identifieur interne : 000110 ( Ncbi/Checkpoint ); précédent : 000109; suivant : 000111C-ME: A 3D Community-Based, Real-Time Collaboration Tool for Scientific Research and Training
Auteurs : Anand Kolatkar [États-Unis] ; Kevin Kennedy [États-Unis] ; Dan Halabuk [États-Unis] ; Josh Kunken [États-Unis] ; Dena Marrinucci [États-Unis] ; Kelly Bethel [États-Unis] ; Rodney Guzman [États-Unis] ; Tim Huckaby [États-Unis] ; Peter Kuhn [États-Unis]Source :
- PLoS ONE [ 1932-6203 ] ; 2008.
Abstract
The need for effective collaboration tools is growing as multidisciplinary proteome-wide projects and distributed research teams become more common. The resulting data is often quite disparate, stored in separate locations, and not contextually related. Collaborative Molecular Modeling Environment (C-ME) is an interactive community-based collaboration system that allows researchers to organize information, visualize data on a two-dimensional (2-D) or three-dimensional (3-D) basis, and share and manage that information with collaborators in real time. C-ME stores the information in industry-standard databases that are immediately accessible by appropriate permission within the computer network directory service or anonymously across the internet through the C-ME application or through a web browser. The system addresses two important aspects of collaboration: context and information management. C-ME allows a researcher to use a 3-D atomic structure model or a 2-D image as a contextual basis on which to attach and share annotations to specific atoms or molecules or to specific regions of a 2-D image. These annotations provide additional information about the atomic structure or image data that can then be evaluated, amended or added to by other project members.
Url:
DOI: 10.1371/journal.pone.0001621
PubMed: 18286178
PubMed Central: 2229842
Affiliations:
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<front><div type="abstract" xml:lang="en"><p>The need for effective collaboration tools is growing as multidisciplinary proteome-wide projects and distributed research teams become more common. The resulting data is often quite disparate, stored in separate locations, and not contextually related. Collaborative Molecular Modeling Environment (C-ME) is an interactive community-based collaboration system that allows researchers to organize information, visualize data on a two-dimensional (2-D) or three-dimensional (3-D) basis, and share and manage that information with collaborators in real time. C-ME stores the information in industry-standard databases that are immediately accessible by appropriate permission within the computer network directory service or anonymously across the internet through the C-ME application or through a web browser. The system addresses two important aspects of collaboration: context and information management. C-ME allows a researcher to use a 3-D atomic structure model or a 2-D image as a contextual basis on which to attach and share annotations to specific atoms or molecules or to specific regions of a 2-D image. These annotations provide additional information about the atomic structure or image data that can then be evaluated, amended or added to by other project members.</p>
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