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Rapid and Effective Generation of Nanobody Based CARs using PCR and Gibson Assembly

Identifieur interne : 000624 ( Pmc/Curation ); précédent : 000623; suivant : 000625

Rapid and Effective Generation of Nanobody Based CARs using PCR and Gibson Assembly

Auteurs : Stijn De Munter [Belgique] ; Alexander Van Parys [Belgique] ; Layla Bral [Belgique] ; Joline Ingels [Belgique] ; Glenn Goetgeluk [Belgique] ; Sarah Bonte [Belgique] ; Melissa Pille [Belgique] ; Lore Billiet [Belgique] ; Karin Weening [Belgique] ; Annick Verhee [Belgique] ; Jose Van Der Heyden [Belgique] ; Tom Taghon [Belgique] ; Georges Leclercq [Belgique] ; Tessa Kerre [Belgique] ; Jan Tavernier [Belgique] ; Bart Vandekerckhove [Belgique]

Source :

RBID : PMC:7037261

Abstract

Recent approval of chimeric antigen receptor (CAR) T cell therapy by the European Medicines Agency (EMA)/Federal and Drug Administration (FDA) and the remarkable results of CAR T clinical trials illustrate the curative potential of this therapy. While CARs against a multitude of different antigens are being developed and tested (pre)clinically, there is still a need for optimization. The use of single-chain variable fragments (scFvs) as targeting moieties hampers the quick generation of functional CARs and could potentially limit the efficacy. Instead, nanobodies may largely circumvent these difficulties. We used an available nanobody library generated after immunization of llamas against Cluster of Differentiation (CD) 20 through DNA vaccination or against the ectodomain of CD33 using soluble protein. The nanobody specific sequences were amplified by PCR and cloned by Gibson Assembly into a retroviral vector containing two different second-generation CAR constructs. After transduction in T cells, we observed high cell membrane nanoCAR expression in all cases. Following stimulation of nanoCAR-expressing T cells with antigen-positive cell lines, robust T cell activation, cytokine production and tumor cell lysis both in vitro and in vivo was observed. The use of nanobody technology in combination with PCR and Gibson Assembly allows for the rapid and effective generation of compact CARs.


Url:
DOI: 10.3390/ijms21030883
PubMed: 32019116
PubMed Central: 7037261

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PMC:7037261

Le document en format XML

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<name sortKey="Taghon, Tom" sort="Taghon, Tom" uniqKey="Taghon T" first="Tom" last="Taghon">Tom Taghon</name>
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<name sortKey="Leclercq, Georges" sort="Leclercq, Georges" uniqKey="Leclercq G" first="Georges" last="Leclercq">Georges Leclercq</name>
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<name sortKey="Vandekerckhove, Bart" sort="Vandekerckhove, Bart" uniqKey="Vandekerckhove B" first="Bart" last="Vandekerckhove">Bart Vandekerckhove</name>
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<p>Recent approval of chimeric antigen receptor (CAR) T cell therapy by the European Medicines Agency (EMA)/Federal and Drug Administration (FDA) and the remarkable results of CAR T clinical trials illustrate the curative potential of this therapy. While CARs against a multitude of different antigens are being developed and tested (pre)clinically, there is still a need for optimization. The use of single-chain variable fragments (scFvs) as targeting moieties hampers the quick generation of functional CARs and could potentially limit the efficacy. Instead, nanobodies may largely circumvent these difficulties. We used an available nanobody library generated after immunization of llamas against Cluster of Differentiation (CD) 20 through DNA vaccination or against the ectodomain of CD33 using soluble protein. The nanobody specific sequences were amplified by PCR and cloned by Gibson Assembly into a retroviral vector containing two different second-generation CAR constructs. After transduction in T cells, we observed high cell membrane nanoCAR expression in all cases. Following stimulation of nanoCAR-expressing T cells with antigen-positive cell lines, robust T cell activation, cytokine production and tumor cell lysis both in vitro and in vivo was observed. The use of nanobody technology in combination with PCR and Gibson Assembly allows for the rapid and effective generation of compact CARs. </p>
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</TEI>
<pmc article-type="research-article">
<pmc-dir>properties open_access</pmc-dir>
<front>
<journal-meta>
<journal-id journal-id-type="nlm-ta">Int J Mol Sci</journal-id>
<journal-id journal-id-type="iso-abbrev">Int J Mol Sci</journal-id>
<journal-id journal-id-type="publisher-id">ijms</journal-id>
<journal-title-group>
<journal-title>International Journal of Molecular Sciences</journal-title>
</journal-title-group>
<issn pub-type="epub">1422-0067</issn>
<publisher>
<publisher-name>MDPI</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="pmid">32019116</article-id>
<article-id pub-id-type="pmc">7037261</article-id>
<article-id pub-id-type="doi">10.3390/ijms21030883</article-id>
<article-id pub-id-type="publisher-id">ijms-21-00883</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Article</subject>
</subj-group>
</article-categories>
<title-group>
<article-title>Rapid and Effective Generation of Nanobody Based CARs using PCR and Gibson Assembly</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<contrib-id contrib-id-type="orcid" authenticated="true">https://orcid.org/0000-0003-3821-0620</contrib-id>
<name>
<surname>De Munter</surname>
<given-names>Stijn</given-names>
</name>
<xref ref-type="aff" rid="af1-ijms-21-00883">1</xref>
</contrib>
<contrib contrib-type="author">
<contrib-id contrib-id-type="orcid" authenticated="true">https://orcid.org/0000-0002-0636-1208</contrib-id>
<name>
<surname>Van Parys</surname>
<given-names>Alexander</given-names>
</name>
<xref ref-type="aff" rid="af2-ijms-21-00883">2</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Bral</surname>
<given-names>Layla</given-names>
</name>
<xref ref-type="aff" rid="af1-ijms-21-00883">1</xref>
</contrib>
<contrib contrib-type="author">
<contrib-id contrib-id-type="orcid" authenticated="true">https://orcid.org/0000-0001-7030-0373</contrib-id>
<name>
<surname>Ingels</surname>
<given-names>Joline</given-names>
</name>
<xref ref-type="aff" rid="af1-ijms-21-00883">1</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Goetgeluk</surname>
<given-names>Glenn</given-names>
</name>
<xref ref-type="aff" rid="af1-ijms-21-00883">1</xref>
</contrib>
<contrib contrib-type="author">
<contrib-id contrib-id-type="orcid" authenticated="true">https://orcid.org/0000-0002-0637-4893</contrib-id>
<name>
<surname>Bonte</surname>
<given-names>Sarah</given-names>
</name>
<xref ref-type="aff" rid="af3-ijms-21-00883">3</xref>
</contrib>
<contrib contrib-type="author">
<contrib-id contrib-id-type="orcid" authenticated="true">https://orcid.org/0000-0002-2757-6486</contrib-id>
<name>
<surname>Pille</surname>
<given-names>Melissa</given-names>
</name>
<xref ref-type="aff" rid="af1-ijms-21-00883">1</xref>
</contrib>
<contrib contrib-type="author">
<contrib-id contrib-id-type="orcid" authenticated="true">https://orcid.org/0000-0001-9372-1920</contrib-id>
<name>
<surname>Billiet</surname>
<given-names>Lore</given-names>
</name>
<xref ref-type="aff" rid="af1-ijms-21-00883">1</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Weening</surname>
<given-names>Karin</given-names>
</name>
<xref ref-type="aff" rid="af1-ijms-21-00883">1</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Verhee</surname>
<given-names>Annick</given-names>
</name>
<xref ref-type="aff" rid="af2-ijms-21-00883">2</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Van der Heyden</surname>
<given-names>Jose</given-names>
</name>
<xref ref-type="aff" rid="af2-ijms-21-00883">2</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Taghon</surname>
<given-names>Tom</given-names>
</name>
<xref ref-type="aff" rid="af1-ijms-21-00883">1</xref>
</contrib>
<contrib contrib-type="author">
<contrib-id contrib-id-type="orcid" authenticated="true">https://orcid.org/0000-0002-1691-5294</contrib-id>
<name>
<surname>Leclercq</surname>
<given-names>Georges</given-names>
</name>
<xref ref-type="aff" rid="af1-ijms-21-00883">1</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Kerre</surname>
<given-names>Tessa</given-names>
</name>
<xref ref-type="aff" rid="af1-ijms-21-00883">1</xref>
<xref ref-type="aff" rid="af3-ijms-21-00883">3</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Tavernier</surname>
<given-names>Jan</given-names>
</name>
<xref ref-type="aff" rid="af2-ijms-21-00883">2</xref>
</contrib>
<contrib contrib-type="author">
<contrib-id contrib-id-type="orcid" authenticated="true">https://orcid.org/0000-0003-3828-4195</contrib-id>
<name>
<surname>Vandekerckhove</surname>
<given-names>Bart</given-names>
</name>
<xref ref-type="aff" rid="af1-ijms-21-00883">1</xref>
<xref rid="c1-ijms-21-00883" ref-type="corresp">*</xref>
</contrib>
</contrib-group>
<aff id="af1-ijms-21-00883">
<label>1</label>
Department of Diagnostic Sciences, Ghent University, 9000 Ghent, Belgium</aff>
<aff id="af2-ijms-21-00883">
<label>2</label>
Cytokine Receptor Laboratory, Flanders Institute of Biotechnology, VIB-UGent Center for Medical Biotechnology, Faculty of Medicine and Health Sciences, Ghent University, 9000 Ghent, Belgium</aff>
<aff id="af3-ijms-21-00883">
<label>3</label>
Department of Internal Medicine and Pediatrics, Ghent University, 9000 Ghent, Belgium</aff>
<author-notes>
<corresp id="c1-ijms-21-00883">
<label>*</label>
Correspondence:
<email>Bart.Vandekerckhove@ugent.be</email>
</corresp>
</author-notes>
<pub-date pub-type="epub">
<day>30</day>
<month>1</month>
<year>2020</year>
</pub-date>
<pub-date pub-type="collection">
<month>2</month>
<year>2020</year>
</pub-date>
<volume>21</volume>
<issue>3</issue>
<elocation-id>883</elocation-id>
<history>
<date date-type="received">
<day>30</day>
<month>11</month>
<year>2019</year>
</date>
<date date-type="accepted">
<day>28</day>
<month>1</month>
<year>2020</year>
</date>
</history>
<permissions>
<copyright-statement>© 2020 by the authors.</copyright-statement>
<copyright-year>2020</copyright-year>
<license license-type="open-access">
<license-p>Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (
<ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by/4.0/">http://creativecommons.org/licenses/by/4.0/</ext-link>
).</license-p>
</license>
</permissions>
<abstract>
<p>Recent approval of chimeric antigen receptor (CAR) T cell therapy by the European Medicines Agency (EMA)/Federal and Drug Administration (FDA) and the remarkable results of CAR T clinical trials illustrate the curative potential of this therapy. While CARs against a multitude of different antigens are being developed and tested (pre)clinically, there is still a need for optimization. The use of single-chain variable fragments (scFvs) as targeting moieties hampers the quick generation of functional CARs and could potentially limit the efficacy. Instead, nanobodies may largely circumvent these difficulties. We used an available nanobody library generated after immunization of llamas against Cluster of Differentiation (CD) 20 through DNA vaccination or against the ectodomain of CD33 using soluble protein. The nanobody specific sequences were amplified by PCR and cloned by Gibson Assembly into a retroviral vector containing two different second-generation CAR constructs. After transduction in T cells, we observed high cell membrane nanoCAR expression in all cases. Following stimulation of nanoCAR-expressing T cells with antigen-positive cell lines, robust T cell activation, cytokine production and tumor cell lysis both in vitro and in vivo was observed. The use of nanobody technology in combination with PCR and Gibson Assembly allows for the rapid and effective generation of compact CARs. </p>
</abstract>
<kwd-group>
<kwd>nanobody</kwd>
<kwd>VHH</kwd>
<kwd>chimeric antigen receptor</kwd>
<kwd>CAR T cell</kwd>
<kwd>CD33</kwd>
<kwd>CD20</kwd>
<kwd>PCR</kwd>
<kwd>Gibson Assembly</kwd>
<kwd>nanoCAR</kwd>
</kwd-group>
</article-meta>
</front>
<floats-group>
<fig id="ijms-21-00883-f001" orientation="portrait" position="float">
<label>Figure 1</label>
<caption>
<p>Generation of the nanoCAR constructs: schematic representation of the retroviral CAR backbone plasmid, nanobody with leader sequence and overhangs at 5′ and 3′, and the two different nanoCAR constructs. Red arrows indicate forward and reverse primers.</p>
</caption>
<graphic xlink:href="ijms-21-00883-g001"></graphic>
</fig>
<fig id="ijms-21-00883-f002" orientation="portrait" position="float">
<label>Figure 2</label>
<caption>
<p>CD33-specific nanoCARs are functional: (
<bold>A</bold>
) CD33 surface expression on different target cell lines analyzed by flow cytometry. MFI represents median fluorescence index; (
<bold>B</bold>
) Cell lysis of CD33
<sup>+</sup>
or CD33
<sup></sup>
target cells after 4 h of co-incubation with T cells expressing the CD33-CD28:ζ nanoCAR in different effector-target ratios (E:T). Reported values are the means of duplicate determinations with error bars indicating the standard error of the mean (SEM); (
<bold>C</bold>
) Cytokine production of nanoCAR T cells was analyzed by intracellular staining 5 h after co-incubation with CD33
<sup>+</sup>
or CD33
<sup></sup>
target cells. Mean percentages of IFN-γ and IL-2 positive cells are shown, gated on eGFP
<sup>+</sup>
cells. Error bars indicate the SEM; (
<bold>D</bold>
) Cell lysis of CD33
<sup>+</sup>
or CD33
<sup></sup>
target cells after co-incubation with CD33-1-CD28:ζ or CD33-1-4_1BB:ζ nanoCAR T cells in different effector-target ratios. Reported values are the means of duplicate determinations. Error bars indicate the SEM; (
<bold>E</bold>
) Cytokine production of CD33-1-CD28:ζ or CD33-1-4_1BB:ζ nanoCAR T cells. Mean percentages of IFN-γ and IL-2 positive cells are shown. Error bars indicate the SEM; (
<bold>F</bold>
) Long-term in vitro stress test. NanoCAR T cells (blue) are incubated at very low (0.025:1) effector to target cell (red) ratios. Arrow indicates addition of fresh Thp1 cells at day 7. Error bars represent the SEM. The data are representative of two independent experiments with three different donors. Each experiment shown was performed two times with three different donors. Data shown are representative for these experiments.</p>
</caption>
<graphic xlink:href="ijms-21-00883-g002"></graphic>
</fig>
<fig id="ijms-21-00883-f003" orientation="portrait" position="float">
<label>Figure 3</label>
<caption>
<p>Eradication of CD33
<sup>+</sup>
target cells in vivo and improvement of survival by CD33-1-4_1BB:ζ nanoCAR T cells but not by CD33-1-CD28:ζ nanoCAR T cells in a murine xenograft model: (
<bold>A</bold>
) Bioluminescence images showing tumor burden in NSG mice starting from day 0 post T cell injection; (
<bold>B</bold>
) Quantification of bioluminescence signal shown in a. Data points shown are the means, and error bars represent the SEM; (
<bold>C</bold>
) Survival of NSG mice treated with PBS, CD33-1-CD28:ζ or CD33-1-4_1BB:ζ nanoCAR T cells. Only significant results are indicated. *
<italic>p</italic>
< 0.05 by log-rank Mantel–Cox test.</p>
</caption>
<graphic xlink:href="ijms-21-00883-g003"></graphic>
</fig>
<fig id="ijms-21-00883-f004" orientation="portrait" position="float">
<label>Figure 4</label>
<caption>
<p>CD33-specific nanoCAR T cells are cytotoxic against CD34
<sup>+</sup>
HPC: (
<bold>A</bold>
) CD33 expression on CD34
<sup>+</sup>
HPC isolated from cord blood. CD34
<sup>+</sup>
HPC were isolated from cord blood and stained for CD45, CD33, CD34 and CD38. Cells are gated on CD45
<sup>dim</sup>
SSC
<sup>lo</sup>
and CD34
<sup>+</sup>
CD38
<sup></sup>
, CD34
<sup>dim</sup>
CD38
<sup>dim</sup>
and CD34
<sup></sup>
CD38
<sup>+</sup>
. Plots are representative for 5 donors; (
<bold>B</bold>
) Cytotoxicity in time. NanoCAR T cells were incubated with CD34 HPC for 72 h. CD38 and CD33 expression on CD34
<sup>+</sup>
HPC measured at the start (zero hour) and the end (72 h) of the experiment; (
<bold>C</bold>
) Cytotoxicity in time. NanoCAR T cells were incubated with CD34 HPC for 72 h. At distinct time points, we measured the presence of T cells and HPC (gated on CD3
<sup></sup>
) by flow cytometry. Data points shown are the means, and error bars represent the SEM taken from a representative experiment. The experiment was performed two times, each time with two different donors.</p>
</caption>
<graphic xlink:href="ijms-21-00883-g004"></graphic>
</fig>
<fig id="ijms-21-00883-f005" orientation="portrait" position="float">
<label>Figure 5</label>
<caption>
<p>CD20 specific nanoCARs are functional: (
<bold>A</bold>
) CD20 surface expression on different target cell lines by flow cytometry. MFI represents median fluorescence index; (
<bold>B</bold>
) Cell lysis of CD20
<sup>+</sup>
or CD20
<sup></sup>
target cells 4 h after co-incubation with T cells expressing CD20 nanoCAR in different effector-target ratios. Reported values are the means of duplicate determinations with error bars indicating the standard error the mean (SEM); (
<bold>C</bold>
) Cytokine production of nanoCAR T cells was analyzed by intracellular staining 5 h after of co-incubation with CD20
<sup>+</sup>
or CD20
<sup></sup>
target cells. Mean percentages of IFN-γ and IL-2 positive cells are shown, gated on eGFP
<sup>+</sup>
cells. Error bars indicate the SEM. Each experiment shown was performed two times with three different donors. Data shown are representative for these experiments.</p>
</caption>
<graphic xlink:href="ijms-21-00883-g005"></graphic>
</fig>
<fig id="ijms-21-00883-f006" orientation="portrait" position="float">
<label>Figure 6</label>
<caption>
<p>CD20 nanoCAR eradicates CD20
<sup>+</sup>
tumor in a murine xenograft model: (
<bold>A</bold>
) Tumor size measured by caliper. Data points shown are the means, error bars represent the SEM, and only significant results are indicated. ****
<italic>p</italic>
< 0.0001 by two-way ANOVA with Bonferroni’s multiple comparison test; (
<bold>B</bold>
) Bioluminescence images showing tumor burden in NSG mice at day 39 post RL inoculation; (
<bold>C</bold>
) Images showing tumor burden in NSG lice at day 39 post RL inoculation; (
<bold>D</bold>
) Expression of eGFP in T cells transduced with the CD20-1-4_1BB:ζ naoCAR pre-intravenous injection and in T cells circulating in blood on day 35 post RL injection (day 17 post CAR T cell injection). Plot shown is representative for five mice.</p>
</caption>
<graphic xlink:href="ijms-21-00883-g006"></graphic>
</fig>
</floats-group>
</pmc>
</record>

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