Updating Phylogeny of Mitochondrial DNA Macrohaplogroup M in India: Dispersal of Modern Human in South Asian Corridor
Identifieur interne : 000657 ( Main/Exploration ); précédent : 000656; suivant : 000658Updating Phylogeny of Mitochondrial DNA Macrohaplogroup M in India: Dispersal of Modern Human in South Asian Corridor
Auteurs : Adimoolam Chandrasekar [Inde] ; Satish Kumar [Inde] ; Jwalapuram Sreenath [Inde] ; Bishwa Nath Sarkar [Inde] ; Bhaskar Pralhad Urade [Inde] ; Sujit Mallick [Inde] ; Syam Sundar Bandopadhyay [Inde] ; Pinuma Barua [Inde] ; Subihra Sankar Barik [Inde] ; Debasish Basu [Inde] ; Uttaravalli Kiran [Inde] ; Prodyot Gangopadhyay [Inde] ; Ramesh Sahani [Inde] ; Bhagavatula Venkata Ravi Prasad [Inde] ; Shampa Gangopadhyay [Inde] ; Gandikota Rama Lakshmi [Inde] ; Rajasekhara Reddy Ravuri [Inde] ; Koneru Padmaja [Inde] ; Pulamaghatta N. Venugopal [Inde] ; Madhu Bala Sharma [Inde] ; Vadlamudi Raghavendra Rao [Inde]Source :
- PLoS ONE [ 1932-6203 ] ; 2009.
Abstract
To construct maternal phylogeny and prehistoric dispersals of modern human being in the Indian sub continent, a diverse subset of 641 complete mitochondrial DNA (mtDNA) genomes belonging to macrohaplogroup M was chosen from a total collection of 2,783 control-region sequences, sampled from 26 selected tribal populations of India. On the basis of complete mtDNA sequencing, we identified 12 new haplogroups - M53 to M64; redefined/ascertained and characterized haplogroups M2, M3, M4, M5, M6, M8′C′Z, M9, M10, M11, M12-G, D, M18, M30, M33, M35, M37, M38, M39, M40, M41, M43, M45 and M49, which were previously described by control and/or coding-region polymorphisms. Our results indicate that the mtDNA lineages reported in the present study (except East Asian lineages M8′C′Z, M9, M10, M11, M12-G, D ) are restricted to Indian region.The deep rooted lineages of macrohaplogroup ‘M’ suggest in-situ origin of these haplogroups in India. Most of these deep rooting lineages are represented by multiple ethnic/linguist groups of India. Hierarchical analysis of molecular variation (AMOVA) shows substantial subdivisions among the tribes of India (F
Url:
DOI: 10.1371/journal.pone.0007447
PubMed: 19823670
PubMed Central: 2757894
Affiliations:
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Le document en format XML
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<sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Updating Phylogeny of Mitochondrial DNA Macrohaplogroup M in India: Dispersal of Modern Human in South Asian Corridor</title>
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<affiliation wicri:level="1"><nlm:aff id="aff2"><addr-line>Anthropological Survey of India, Central Regional Centre, Nagpur, India</addr-line>
</nlm:aff>
<country xml:lang="fr">Inde</country>
<wicri:regionArea>Anthropological Survey of India, Central Regional Centre, Nagpur</wicri:regionArea>
<wicri:noRegion>Nagpur</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Lakshmi, Gandikota Rama" sort="Lakshmi, Gandikota Rama" uniqKey="Lakshmi G" first="Gandikota Rama" last="Lakshmi">Gandikota Rama Lakshmi</name>
<affiliation wicri:level="1"><nlm:aff id="aff2"><addr-line>Anthropological Survey of India, Central Regional Centre, Nagpur, India</addr-line>
</nlm:aff>
<country xml:lang="fr">Inde</country>
<wicri:regionArea>Anthropological Survey of India, Central Regional Centre, Nagpur</wicri:regionArea>
<wicri:noRegion>Nagpur</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Ravuri, Rajasekhara Reddy" sort="Ravuri, Rajasekhara Reddy" uniqKey="Ravuri R" first="Rajasekhara Reddy" last="Ravuri">Rajasekhara Reddy Ravuri</name>
<affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Anthropological Survey of India, Southern Regional Centre, Bogadi, Mysore, India</addr-line>
</nlm:aff>
<country xml:lang="fr">Inde</country>
<wicri:regionArea>Anthropological Survey of India, Southern Regional Centre, Bogadi, Mysore</wicri:regionArea>
<wicri:noRegion>Mysore</wicri:noRegion>
</affiliation>
</author>
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<affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Anthropological Survey of India, Southern Regional Centre, Bogadi, Mysore, India</addr-line>
</nlm:aff>
<country xml:lang="fr">Inde</country>
<wicri:regionArea>Anthropological Survey of India, Southern Regional Centre, Bogadi, Mysore</wicri:regionArea>
<wicri:noRegion>Mysore</wicri:noRegion>
</affiliation>
</author>
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<affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Anthropological Survey of India, Southern Regional Centre, Bogadi, Mysore, India</addr-line>
</nlm:aff>
<country xml:lang="fr">Inde</country>
<wicri:regionArea>Anthropological Survey of India, Southern Regional Centre, Bogadi, Mysore</wicri:regionArea>
<wicri:noRegion>Mysore</wicri:noRegion>
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</author>
<author><name sortKey="Sharma, Madhu Bala" sort="Sharma, Madhu Bala" uniqKey="Sharma M" first="Madhu Bala" last="Sharma">Madhu Bala Sharma</name>
<affiliation wicri:level="1"><nlm:aff id="aff2"><addr-line>Anthropological Survey of India, Central Regional Centre, Nagpur, India</addr-line>
</nlm:aff>
<country xml:lang="fr">Inde</country>
<wicri:regionArea>Anthropological Survey of India, Central Regional Centre, Nagpur</wicri:regionArea>
<wicri:noRegion>Nagpur</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Rao, Vadlamudi Raghavendra" sort="Rao, Vadlamudi Raghavendra" uniqKey="Rao V" first="Vadlamudi Raghavendra" last="Rao">Vadlamudi Raghavendra Rao</name>
<affiliation wicri:level="1"><nlm:aff id="aff3"><addr-line>Anthropological Survey of India, 27, Kolkata, India</addr-line>
</nlm:aff>
<country xml:lang="fr">Inde</country>
<wicri:regionArea>Anthropological Survey of India, 27, Kolkata</wicri:regionArea>
<wicri:noRegion>Kolkata</wicri:noRegion>
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</analytic>
<series><title level="j">PLoS ONE</title>
<idno type="eISSN">1932-6203</idno>
<imprint><date when="2009">2009</date>
</imprint>
</series>
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<front><div type="abstract" xml:lang="en"><p>To construct maternal phylogeny and prehistoric dispersals of modern human being in the Indian sub continent, a diverse subset of 641 complete mitochondrial DNA (mtDNA) genomes belonging to macrohaplogroup M was chosen from a total collection of 2,783 control-region sequences, sampled from 26 selected tribal populations of India. On the basis of complete mtDNA sequencing, we identified 12 new haplogroups - M53 to M64; redefined/ascertained and characterized haplogroups M2, M3, M4, M5, M6, M8′C′Z, M9, M10, M11, M12-G, D, M18, M30, M33, M35, M37, M38, M39, M40, M41, M43, M45 and M49, which were previously described by control and/or coding-region polymorphisms. Our results indicate that the mtDNA lineages reported in the present study (except East Asian lineages M8′C′Z, M9, M10, M11, M12-G, D ) are restricted to Indian region.The deep rooted lineages of macrohaplogroup ‘M’ suggest in-situ origin of these haplogroups in India. Most of these deep rooting lineages are represented by multiple ethnic/linguist groups of India. Hierarchical analysis of molecular variation (AMOVA) shows substantial subdivisions among the tribes of India (F<sc>st</sc>
= 0.16164). The current Indian mtDNA gene pool was shaped by the initial settlers and was galvanized by minor events of gene flow from the east and west to the restricted zones. Northeast Indian mtDNA pool harbors region specific lineages, other Indian lineages and East Asian lineages. We also suggest the establishment of an East Asian gene in North East India through admixture rather than replacement.</p>
</div>
</front>
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<name sortKey="Basu, Debasish" sort="Basu, Debasish" uniqKey="Basu D" first="Debasish" last="Basu">Debasish Basu</name>
<name sortKey="Gangopadhyay, Prodyot" sort="Gangopadhyay, Prodyot" uniqKey="Gangopadhyay P" first="Prodyot" last="Gangopadhyay">Prodyot Gangopadhyay</name>
<name sortKey="Gangopadhyay, Shampa" sort="Gangopadhyay, Shampa" uniqKey="Gangopadhyay S" first="Shampa" last="Gangopadhyay">Shampa Gangopadhyay</name>
<name sortKey="Kiran, Uttaravalli" sort="Kiran, Uttaravalli" uniqKey="Kiran U" first="Uttaravalli" last="Kiran">Uttaravalli Kiran</name>
<name sortKey="Kumar, Satish" sort="Kumar, Satish" uniqKey="Kumar S" first="Satish" last="Kumar">Satish Kumar</name>
<name sortKey="Lakshmi, Gandikota Rama" sort="Lakshmi, Gandikota Rama" uniqKey="Lakshmi G" first="Gandikota Rama" last="Lakshmi">Gandikota Rama Lakshmi</name>
<name sortKey="Mallick, Sujit" sort="Mallick, Sujit" uniqKey="Mallick S" first="Sujit" last="Mallick">Sujit Mallick</name>
<name sortKey="Padmaja, Koneru" sort="Padmaja, Koneru" uniqKey="Padmaja K" first="Koneru" last="Padmaja">Koneru Padmaja</name>
<name sortKey="Prasad, Bhagavatula Venkata Ravi" sort="Prasad, Bhagavatula Venkata Ravi" uniqKey="Prasad B" first="Bhagavatula Venkata Ravi" last="Prasad">Bhagavatula Venkata Ravi Prasad</name>
<name sortKey="Rao, Vadlamudi Raghavendra" sort="Rao, Vadlamudi Raghavendra" uniqKey="Rao V" first="Vadlamudi Raghavendra" last="Rao">Vadlamudi Raghavendra Rao</name>
<name sortKey="Ravuri, Rajasekhara Reddy" sort="Ravuri, Rajasekhara Reddy" uniqKey="Ravuri R" first="Rajasekhara Reddy" last="Ravuri">Rajasekhara Reddy Ravuri</name>
<name sortKey="Sahani, Ramesh" sort="Sahani, Ramesh" uniqKey="Sahani R" first="Ramesh" last="Sahani">Ramesh Sahani</name>
<name sortKey="Sarkar, Bishwa Nath" sort="Sarkar, Bishwa Nath" uniqKey="Sarkar B" first="Bishwa Nath" last="Sarkar">Bishwa Nath Sarkar</name>
<name sortKey="Sharma, Madhu Bala" sort="Sharma, Madhu Bala" uniqKey="Sharma M" first="Madhu Bala" last="Sharma">Madhu Bala Sharma</name>
<name sortKey="Sreenath, Jwalapuram" sort="Sreenath, Jwalapuram" uniqKey="Sreenath J" first="Jwalapuram" last="Sreenath">Jwalapuram Sreenath</name>
<name sortKey="Urade, Bhaskar Pralhad" sort="Urade, Bhaskar Pralhad" uniqKey="Urade B" first="Bhaskar Pralhad" last="Urade">Bhaskar Pralhad Urade</name>
<name sortKey="Venugopal, Pulamaghatta N" sort="Venugopal, Pulamaghatta N" uniqKey="Venugopal P" first="Pulamaghatta N." last="Venugopal">Pulamaghatta N. Venugopal</name>
</country>
</tree>
</affiliations>
</record>
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