Land use and soil type determine the presence of the pathogen Burkholderia pseudomallei in tropical rivers.
Identifieur interne : 000629 ( Ncbi/Merge ); précédent : 000628; suivant : 000630Land use and soil type determine the presence of the pathogen Burkholderia pseudomallei in tropical rivers.
Auteurs : Olivier Ribolzi [France] ; Emma Rochelle-Newall [France] ; Sabine Dittrich [Laos] ; Yves Auda [France] ; Paul N. Newton [Laos] ; Sayaphet Rattanavong [Laos] ; Michael Knappik [Laos] ; Bounsamai Soulileuth [Laos] ; Oloth Sengtaheuanghoung [Laos] ; David A B. Dance [Laos] ; Alain Pierret [Laos]Source :
- Environmental science and pollution research international [ 1614-7499 ] ; 2016.
Abstract
Burkholderia pseudomallei is the bacterium that causes melioidosis in humans. While B. pseudomallei is known to be endemic in South East Asia (SEA), the occurrence of the disease in other parts of the tropics points towards a potentially large global distribution. We investigated the environmental factors that influence the presence (and absence) of B. pseudomallei in a tropical watershed in SEA. Our main objective was to determine whether there is a link between the presence of the organism in the hydrographic network and the upstream soil and land-use type. The presence of B. pseudomallei was determined using a specific quantitative real-time PCR assay following enrichment culture. Land use, soil, geomorphology, and environmental data were then analyzed using partial least squares discriminant analysis (PLSDA) to compare the B. pseudomallei positive and negative sites. Soil type in the surrounding catchment and turbidity had a strong positive influence on the presence (acrisols and luvisols) or absence (ferralsols) of B. pseudomallei. Given the strong apparent links between soil characteristics, water turbidity, and the presence/absence of B. pseudomallei, actions to raise public awareness about factors increasing the risk of exposure should be undertaken in order to reduce the incidence of melioidosis in regions of endemicity.
DOI: 10.1007/s11356-015-5943-z
PubMed: 26758304
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Land use and soil type determine the presence of the pathogen Burkholderia pseudomallei in tropical rivers.</title><author><name sortKey="Ribolzi, Olivier" sort="Ribolzi, Olivier" uniqKey="Ribolzi O" first="Olivier" last="Ribolzi">Olivier Ribolzi</name><affiliation wicri:level="3"><nlm:affiliation>Géosciences Environnement Toulouse (GET), UMR 5563, (IRD, CNRS, UPS), Université de Toulouse, UPS (OMP), CNRS, Toulouse, France. olivier.ribolzi@ird.fr.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Géosciences Environnement Toulouse (GET), UMR 5563, (IRD, CNRS, UPS), Université de Toulouse, UPS (OMP), CNRS, Toulouse</wicri:regionArea><placeName><region type="region">Occitanie (région administrative)</region><region type="old region">Midi-Pyrénées</region><settlement type="city">Toulouse</settlement></placeName></affiliation></author><author><name sortKey="Rochelle Newall, Emma" sort="Rochelle Newall, Emma" uniqKey="Rochelle Newall E" first="Emma" last="Rochelle-Newall">Emma Rochelle-Newall</name><affiliation wicri:level="3"><nlm:affiliation>iEES-Paris (IRD-UPMC-CNRS-INRA-UDD-UPEC), Sorbonne Universités, UPMC Univ Paris 06, Institut de Recherche pour le Développement (IRD), case 23, 4 place Jussieu, Paris cedex, 75252, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>iEES-Paris (IRD-UPMC-CNRS-INRA-UDD-UPEC), Sorbonne Universités, UPMC Univ Paris 06, Institut de Recherche pour le Développement (IRD), case 23, 4 place Jussieu, Paris cedex, 75252</wicri:regionArea><placeName><region type="region" nuts="2">Île-de-France</region></placeName></affiliation></author><author><name sortKey="Dittrich, Sabine" sort="Dittrich, Sabine" uniqKey="Dittrich S" first="Sabine" last="Dittrich">Sabine Dittrich</name><affiliation wicri:level="1"><nlm:affiliation>Lao-Oxford-Mahosot Hospital-Wellcome Trust Research Unit, Microbiology Laboratory, Mahosot Hospital, Vientiane, Lao People's Democratic Republic.</nlm:affiliation><country xml:lang="fr">Laos</country><wicri:regionArea>Lao-Oxford-Mahosot Hospital-Wellcome Trust Research Unit, Microbiology Laboratory, Mahosot Hospital, Vientiane</wicri:regionArea><wicri:noRegion>Vientiane</wicri:noRegion></affiliation></author><author><name sortKey="Auda, Yves" sort="Auda, Yves" uniqKey="Auda Y" first="Yves" last="Auda">Yves Auda</name><affiliation wicri:level="3"><nlm:affiliation>Géosciences Environnement Toulouse (GET), UMR 5563, (IRD, CNRS, UPS), Université de Toulouse, UPS (OMP), CNRS, Toulouse, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Géosciences Environnement Toulouse (GET), UMR 5563, (IRD, CNRS, UPS), Université de Toulouse, UPS (OMP), CNRS, Toulouse</wicri:regionArea><placeName><region type="region">Occitanie (région administrative)</region><region type="old region">Midi-Pyrénées</region><settlement type="city">Toulouse</settlement></placeName></affiliation></author><author><name sortKey="Newton, Paul N" sort="Newton, Paul N" uniqKey="Newton P" first="Paul N" last="Newton">Paul N. Newton</name><affiliation wicri:level="1"><nlm:affiliation>Lao-Oxford-Mahosot Hospital-Wellcome Trust Research Unit, Microbiology Laboratory, Mahosot Hospital, Vientiane, Lao People's Democratic Republic.</nlm:affiliation><country xml:lang="fr">Laos</country><wicri:regionArea>Lao-Oxford-Mahosot Hospital-Wellcome Trust Research Unit, Microbiology Laboratory, Mahosot Hospital, Vientiane</wicri:regionArea><wicri:noRegion>Vientiane</wicri:noRegion></affiliation></author><author><name sortKey="Rattanavong, Sayaphet" sort="Rattanavong, Sayaphet" uniqKey="Rattanavong S" first="Sayaphet" last="Rattanavong">Sayaphet Rattanavong</name><affiliation wicri:level="1"><nlm:affiliation>Lao-Oxford-Mahosot Hospital-Wellcome Trust Research Unit, Microbiology Laboratory, Mahosot Hospital, Vientiane, Lao People's Democratic Republic.</nlm:affiliation><country xml:lang="fr">Laos</country><wicri:regionArea>Lao-Oxford-Mahosot Hospital-Wellcome Trust Research Unit, Microbiology Laboratory, Mahosot Hospital, Vientiane</wicri:regionArea><wicri:noRegion>Vientiane</wicri:noRegion></affiliation></author><author><name sortKey="Knappik, Michael" sort="Knappik, Michael" uniqKey="Knappik M" first="Michael" last="Knappik">Michael Knappik</name><affiliation wicri:level="1"><nlm:affiliation>Lao-Oxford-Mahosot Hospital-Wellcome Trust Research Unit, Microbiology Laboratory, Mahosot Hospital, Vientiane, Lao People's Democratic Republic.</nlm:affiliation><country xml:lang="fr">Laos</country><wicri:regionArea>Lao-Oxford-Mahosot Hospital-Wellcome Trust Research Unit, Microbiology Laboratory, Mahosot Hospital, Vientiane</wicri:regionArea><wicri:noRegion>Vientiane</wicri:noRegion></affiliation></author><author><name sortKey="Soulileuth, Bounsamai" sort="Soulileuth, Bounsamai" uniqKey="Soulileuth B" first="Bounsamai" last="Soulileuth">Bounsamai Soulileuth</name><affiliation wicri:level="1"><nlm:affiliation>Institute of Ecology and Environmental Science-Paris, Institut de Recherche pour le Développement (IRD), Vientiane, Lao People's Democratic Republic.</nlm:affiliation><country xml:lang="fr">Laos</country><wicri:regionArea>Institute of Ecology and Environmental Science-Paris, Institut de Recherche pour le Développement (IRD), Vientiane</wicri:regionArea><wicri:noRegion>Vientiane</wicri:noRegion></affiliation></author><author><name sortKey="Sengtaheuanghoung, Oloth" sort="Sengtaheuanghoung, Oloth" uniqKey="Sengtaheuanghoung O" first="Oloth" last="Sengtaheuanghoung">Oloth Sengtaheuanghoung</name><affiliation wicri:level="1"><nlm:affiliation>Department of Agricultural Land Management (DALaM), P.O. Box 4199, Ban Nogviengkham, Xaythany District, Vientiane, Lao People's Democratic Republic.</nlm:affiliation><country xml:lang="fr">Laos</country><wicri:regionArea>Department of Agricultural Land Management (DALaM), P.O. Box 4199, Ban Nogviengkham, Xaythany District, Vientiane</wicri:regionArea><wicri:noRegion>Vientiane</wicri:noRegion></affiliation></author><author><name sortKey="Dance, David A B" sort="Dance, David A B" uniqKey="Dance D" first="David A B" last="Dance">David A B. 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Newton</name><affiliation wicri:level="1"><nlm:affiliation>Lao-Oxford-Mahosot Hospital-Wellcome Trust Research Unit, Microbiology Laboratory, Mahosot Hospital, Vientiane, Lao People's Democratic Republic.</nlm:affiliation><country xml:lang="fr">Laos</country><wicri:regionArea>Lao-Oxford-Mahosot Hospital-Wellcome Trust Research Unit, Microbiology Laboratory, Mahosot Hospital, Vientiane</wicri:regionArea><wicri:noRegion>Vientiane</wicri:noRegion></affiliation></author><author><name sortKey="Rattanavong, Sayaphet" sort="Rattanavong, Sayaphet" uniqKey="Rattanavong S" first="Sayaphet" last="Rattanavong">Sayaphet Rattanavong</name><affiliation wicri:level="1"><nlm:affiliation>Lao-Oxford-Mahosot Hospital-Wellcome Trust Research Unit, Microbiology Laboratory, Mahosot Hospital, Vientiane, Lao People's Democratic Republic.</nlm:affiliation><country xml:lang="fr">Laos</country><wicri:regionArea>Lao-Oxford-Mahosot Hospital-Wellcome Trust Research Unit, Microbiology Laboratory, Mahosot Hospital, Vientiane</wicri:regionArea><wicri:noRegion>Vientiane</wicri:noRegion></affiliation></author><author><name sortKey="Knappik, Michael" sort="Knappik, Michael" uniqKey="Knappik M" first="Michael" last="Knappik">Michael Knappik</name><affiliation wicri:level="1"><nlm:affiliation>Lao-Oxford-Mahosot Hospital-Wellcome Trust Research Unit, Microbiology Laboratory, Mahosot Hospital, Vientiane, Lao People's Democratic Republic.</nlm:affiliation><country xml:lang="fr">Laos</country><wicri:regionArea>Lao-Oxford-Mahosot Hospital-Wellcome Trust Research Unit, Microbiology Laboratory, Mahosot Hospital, Vientiane</wicri:regionArea><wicri:noRegion>Vientiane</wicri:noRegion></affiliation></author><author><name sortKey="Soulileuth, Bounsamai" sort="Soulileuth, Bounsamai" uniqKey="Soulileuth B" first="Bounsamai" last="Soulileuth">Bounsamai Soulileuth</name><affiliation wicri:level="1"><nlm:affiliation>Institute of Ecology and Environmental Science-Paris, Institut de Recherche pour le Développement (IRD), Vientiane, Lao People's Democratic Republic.</nlm:affiliation><country xml:lang="fr">Laos</country><wicri:regionArea>Institute of Ecology and Environmental Science-Paris, Institut de Recherche pour le Développement (IRD), Vientiane</wicri:regionArea><wicri:noRegion>Vientiane</wicri:noRegion></affiliation></author><author><name sortKey="Sengtaheuanghoung, Oloth" sort="Sengtaheuanghoung, Oloth" uniqKey="Sengtaheuanghoung O" first="Oloth" last="Sengtaheuanghoung">Oloth Sengtaheuanghoung</name><affiliation wicri:level="1"><nlm:affiliation>Department of Agricultural Land Management (DALaM), P.O. Box 4199, Ban Nogviengkham, Xaythany District, Vientiane, Lao People's Democratic Republic.</nlm:affiliation><country xml:lang="fr">Laos</country><wicri:regionArea>Department of Agricultural Land Management (DALaM), P.O. Box 4199, Ban Nogviengkham, Xaythany District, Vientiane</wicri:regionArea><wicri:noRegion>Vientiane</wicri:noRegion></affiliation></author><author><name sortKey="Dance, David A B" sort="Dance, David A B" uniqKey="Dance D" first="David A B" last="Dance">David A B. Dance</name><affiliation wicri:level="1"><nlm:affiliation>Lao-Oxford-Mahosot Hospital-Wellcome Trust Research Unit, Microbiology Laboratory, Mahosot Hospital, Vientiane, Lao People's Democratic Republic.</nlm:affiliation><country xml:lang="fr">Laos</country><wicri:regionArea>Lao-Oxford-Mahosot Hospital-Wellcome Trust Research Unit, Microbiology Laboratory, Mahosot Hospital, Vientiane</wicri:regionArea><wicri:noRegion>Vientiane</wicri:noRegion></affiliation></author><author><name sortKey="Pierret, Alain" sort="Pierret, Alain" uniqKey="Pierret A" first="Alain" last="Pierret">Alain Pierret</name><affiliation wicri:level="1"><nlm:affiliation>Institute of Ecology and Environmental Science-Paris, Institut de Recherche pour le Développement (IRD), Vientiane, Lao People's Democratic Republic.</nlm:affiliation><country xml:lang="fr">Laos</country><wicri:regionArea>Institute of Ecology and Environmental Science-Paris, Institut de Recherche pour le Développement (IRD), Vientiane</wicri:regionArea><wicri:noRegion>Vientiane</wicri:noRegion></affiliation></author></analytic><series><title level="j">Environmental science and pollution research international</title><idno type="eISSN">1614-7499</idno><imprint><date when="2016" type="published">2016</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Burkholderia pseudomallei is the bacterium that causes melioidosis in humans. While B. pseudomallei is known to be endemic in South East Asia (SEA), the occurrence of the disease in other parts of the tropics points towards a potentially large global distribution. We investigated the environmental factors that influence the presence (and absence) of B. pseudomallei in a tropical watershed in SEA. Our main objective was to determine whether there is a link between the presence of the organism in the hydrographic network and the upstream soil and land-use type. The presence of B. pseudomallei was determined using a specific quantitative real-time PCR assay following enrichment culture. Land use, soil, geomorphology, and environmental data were then analyzed using partial least squares discriminant analysis (PLSDA) to compare the B. pseudomallei positive and negative sites. Soil type in the surrounding catchment and turbidity had a strong positive influence on the presence (acrisols and luvisols) or absence (ferralsols) of B. pseudomallei. Given the strong apparent links between soil characteristics, water turbidity, and the presence/absence of B. pseudomallei, actions to raise public awareness about factors increasing the risk of exposure should be undertaken in order to reduce the incidence of melioidosis in regions of endemicity.</div></front></TEI><pubmed><MedlineCitation Status="In-Process" Owner="NLM"><PMID Version="1">26758304</PMID><DateCreated><Year>2016</Year><Month>04</Month><Day>27</Day></DateCreated><DateRevised><Year>2017</Year><Month>02</Month><Day>08</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1614-7499</ISSN><JournalIssue CitedMedium="Internet"><Volume>23</Volume><Issue>8</Issue><PubDate><Year>2016</Year><Month>Apr</Month></PubDate></JournalIssue><Title>Environmental science and pollution research international</Title><ISOAbbreviation>Environ Sci Pollut Res Int</ISOAbbreviation></Journal><ArticleTitle>Land use and soil type determine the presence of the pathogen Burkholderia pseudomallei in tropical rivers.</ArticleTitle><Pagination><MedlinePgn>7828-39</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1007/s11356-015-5943-z</ELocationID><Abstract><AbstractText>Burkholderia pseudomallei is the bacterium that causes melioidosis in humans. While B. pseudomallei is known to be endemic in South East Asia (SEA), the occurrence of the disease in other parts of the tropics points towards a potentially large global distribution. We investigated the environmental factors that influence the presence (and absence) of B. pseudomallei in a tropical watershed in SEA. Our main objective was to determine whether there is a link between the presence of the organism in the hydrographic network and the upstream soil and land-use type. The presence of B. pseudomallei was determined using a specific quantitative real-time PCR assay following enrichment culture. Land use, soil, geomorphology, and environmental data were then analyzed using partial least squares discriminant analysis (PLSDA) to compare the B. pseudomallei positive and negative sites. Soil type in the surrounding catchment and turbidity had a strong positive influence on the presence (acrisols and luvisols) or absence (ferralsols) of B. pseudomallei. Given the strong apparent links between soil characteristics, water turbidity, and the presence/absence of B. pseudomallei, actions to raise public awareness about factors increasing the risk of exposure should be undertaken in order to reduce the incidence of melioidosis in regions of endemicity.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Ribolzi</LastName><ForeName>Olivier</ForeName><Initials>O</Initials><AffiliationInfo><Affiliation>Géosciences Environnement Toulouse (GET), UMR 5563, (IRD, CNRS, UPS), Université de Toulouse, UPS (OMP), CNRS, Toulouse, France. olivier.ribolzi@ird.fr.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Rochelle-Newall</LastName><ForeName>Emma</ForeName><Initials>E</Initials><AffiliationInfo><Affiliation>iEES-Paris (IRD-UPMC-CNRS-INRA-UDD-UPEC), Sorbonne Universités, UPMC Univ Paris 06, Institut de Recherche pour le Développement (IRD), case 23, 4 place Jussieu, Paris cedex, 75252, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Dittrich</LastName><ForeName>Sabine</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>Lao-Oxford-Mahosot Hospital-Wellcome Trust Research Unit, Microbiology Laboratory, Mahosot Hospital, Vientiane, Lao People's Democratic Republic.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Centre for Tropical Medicine and Global Health, Nuffield Department of Medicine, University of Oxford, Oxford, UK.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Auda</LastName><ForeName>Yves</ForeName><Initials>Y</Initials><AffiliationInfo><Affiliation>Géosciences Environnement Toulouse (GET), UMR 5563, (IRD, CNRS, UPS), Université de Toulouse, UPS (OMP), CNRS, Toulouse, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Newton</LastName><ForeName>Paul N</ForeName><Initials>PN</Initials><AffiliationInfo><Affiliation>Lao-Oxford-Mahosot Hospital-Wellcome Trust Research Unit, Microbiology Laboratory, Mahosot Hospital, Vientiane, Lao People's Democratic Republic.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Centre for Tropical Medicine and Global Health, Nuffield Department of Medicine, University of Oxford, Oxford, UK.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Rattanavong</LastName><ForeName>Sayaphet</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>Lao-Oxford-Mahosot Hospital-Wellcome Trust Research Unit, Microbiology Laboratory, Mahosot Hospital, Vientiane, Lao People's Democratic Republic.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Knappik</LastName><ForeName>Michael</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Lao-Oxford-Mahosot Hospital-Wellcome Trust Research Unit, Microbiology Laboratory, Mahosot Hospital, Vientiane, Lao People's Democratic Republic.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Centre for Tropical Medicine and Global Health, Nuffield Department of Medicine, University of Oxford, Oxford, UK.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Soulileuth</LastName><ForeName>Bounsamai</ForeName><Initials>B</Initials><AffiliationInfo><Affiliation>Institute of Ecology and Environmental Science-Paris, Institut de Recherche pour le Développement (IRD), Vientiane, Lao People's Democratic Republic.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Sengtaheuanghoung</LastName><ForeName>Oloth</ForeName><Initials>O</Initials><AffiliationInfo><Affiliation>Department of Agricultural Land Management (DALaM), P.O. Box 4199, Ban Nogviengkham, Xaythany District, Vientiane, Lao People's Democratic Republic.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Dance</LastName><ForeName>David A B</ForeName><Initials>DA</Initials><AffiliationInfo><Affiliation>Lao-Oxford-Mahosot Hospital-Wellcome Trust Research Unit, Microbiology Laboratory, Mahosot Hospital, Vientiane, Lao People's Democratic Republic.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Centre for Tropical Medicine and Global Health, Nuffield Department of Medicine, University of Oxford, Oxford, UK.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Pierret</LastName><ForeName>Alain</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Institute of Ecology and Environmental Science-Paris, Institut de Recherche pour le Développement (IRD), Vientiane, Lao People's Democratic Republic.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2016</Year><Month>01</Month><Day>13</Day></ArticleDate></Article><MedlineJournalInfo><Country>Germany</Country><MedlineTA>Environ Sci Pollut Res Int</MedlineTA><NlmUniqueID>9441769</NlmUniqueID><ISSNLinking>0944-1344</ISSNLinking></MedlineJournalInfo><CitationSubset>IM</CitationSubset><CommentsCorrectionsList><CommentsCorrections RefType="Cites"><RefSource>Emerg Infect Dis. 2014 Feb;20(2):265-8</RefSource><PMID Version="1">24447771</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Mol Microbiol. 2014 Feb;91(4):805-20</RefSource><PMID Version="1">24354890</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Nat Rev Microbiol. 2014 Dec;12(12):797-808</RefSource><PMID Version="1">25329406</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>ISME J. 2015 Mar;9(3):721-34</RefSource><PMID Version="1">25171335</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>PLoS Negl Trop Dis. 2015 Mar;9(3):e0003635</RefSource><PMID Version="1">25803046</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Appl Environ Microbiol. 2015 Jun;81(11):3722-7</RefSource><PMID Version="1">25819969</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>PLoS One. 2015;10(9):e0138953</RefSource><PMID Version="1">26398904</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Environ Sci Pollut Res Int. 2016 Feb;23(4):3427-35</RefSource><PMID Version="1">26490918</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Am J Trop Med Hyg. 2001 Sep;65(3):177-9</RefSource><PMID Version="1">11561699</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Acta Trop. 2001 Dec 21;80(3):237-44</RefSource><PMID Version="1">11700181</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Clin Microbiol Rev. 1991 Jan;4(1):52-60</RefSource><PMID Version="1">2004347</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Annu Rev Microbiol. 1994;48:743-72</RefSource><PMID Version="1">7826025</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>J Biol Chem. 1995 Nov 10;270(45):26723-6</RefSource><PMID Version="1">7592901</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>J Clin Microbiol. 2005 Feb;43(2):970-2</RefSource><PMID Version="1">15695721</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Clin Microbiol Rev. 2005 Apr;18(2):383-416</RefSource><PMID Version="1">15831829</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>PLoS Comput Biol. 2005 Oct;1(5):e55</RefSource><PMID Version="1">16261196</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>J Clin Microbiol. 2006 Jan;44(1):85-90</RefSource><PMID Version="1">16390953</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>J Med Microbiol. 2006 Jun;55(Pt 6):661-8</RefSource><PMID Version="1">16687582</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Trans R Soc Trop Med Hyg. 2008 Dec;102 Suppl 1:S1-4</RefSource><PMID Version="1">19121666</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Trans R Soc Trop Med Hyg. 2008 Dec;102 Suppl 1:S5-9</RefSource><PMID Version="1">19121688</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>PLoS Negl Trop Dis. 2010;4(6):e694</RefSource><PMID Version="1">20532233</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Appl Environ Microbiol. 2010 Aug;76(15):5305-7</RefSource><PMID Version="1">20543039</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Appl Environ Microbiol. 2011 Jan;77(2):532-6</RefSource><PMID Version="1">21075883</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Emerg Infect Dis. 2011 Jul;17(7):1322-4</RefSource><PMID Version="1">21762606</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Appl Environ Microbiol. 2011 Oct;77(20):7243-6</RefSource><PMID Version="1">21873480</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Am J Trop Med Hyg. 2012 May;86(5):872-7</RefSource><PMID Version="1">22556090</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>PLoS Negl Trop Dis. 2012;6(6):e1715</RefSource><PMID Version="1">22745846</PMID></CommentsCorrections></CommentsCorrectionsList><OtherID Source="NLM">PMC4846699</OtherID><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Acrisols</Keyword><Keyword 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sortKey="Rochelle Newall, Emma" sort="Rochelle Newall, Emma" uniqKey="Rochelle Newall E" first="Emma" last="Rochelle-Newall">Emma Rochelle-Newall</name></country><country name="Laos"><noRegion><name sortKey="Dittrich, Sabine" sort="Dittrich, Sabine" uniqKey="Dittrich S" first="Sabine" last="Dittrich">Sabine Dittrich</name></noRegion><name sortKey="Dance, David A B" sort="Dance, David A B" uniqKey="Dance D" first="David A B" last="Dance">David A B. Dance</name><name sortKey="Knappik, Michael" sort="Knappik, Michael" uniqKey="Knappik M" first="Michael" last="Knappik">Michael Knappik</name><name sortKey="Newton, Paul N" sort="Newton, Paul N" uniqKey="Newton P" first="Paul N" last="Newton">Paul N. Newton</name><name sortKey="Pierret, Alain" sort="Pierret, Alain" uniqKey="Pierret A" first="Alain" last="Pierret">Alain Pierret</name><name sortKey="Rattanavong, Sayaphet" sort="Rattanavong, Sayaphet" uniqKey="Rattanavong S" first="Sayaphet" last="Rattanavong">Sayaphet Rattanavong</name><name sortKey="Sengtaheuanghoung, Oloth" sort="Sengtaheuanghoung, Oloth" uniqKey="Sengtaheuanghoung O" first="Oloth" last="Sengtaheuanghoung">Oloth Sengtaheuanghoung</name><name sortKey="Soulileuth, Bounsamai" sort="Soulileuth, Bounsamai" uniqKey="Soulileuth B" first="Bounsamai" last="Soulileuth">Bounsamai Soulileuth</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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