Phylogenetic analysis of the hexon and protease genes of a fish adenovirus isolated from white sturgeon (Acipenser transmontanus) supports the proposal for a new adenovirus genus.
Identifieur interne : 001191 ( Main/Merge ); précédent : 001190; suivant : 001192Phylogenetic analysis of the hexon and protease genes of a fish adenovirus isolated from white sturgeon (Acipenser transmontanus) supports the proposal for a new adenovirus genus.
Auteurs : Gábor M. Kovács [Hongrie] ; Scott E. Lapatra ; Jean Claude D'Halluin ; Mária BenkoSource :
- Virus research [ 0168-1702 ] ; 2003.
English descriptors
- KwdEn :
- Adenoviridae (classification), Adenoviridae (genetics), Adenoviridae (isolation & purification), Adenoviridae Infections (veterinary), Adenoviridae Infections (virology), Amino Acid Sequence, Animals, Base Sequence, Capsid Proteins (genetics), Endopeptidases (genetics), Fish Diseases (virology), Fishes (virology), Molecular Sequence Data, Phylogeny, Sequence Analysis, DNA.
- MESH :
- chemical , genetics : Capsid Proteins, Endopeptidases.
- classification : Adenoviridae.
- genetics : Adenoviridae.
- isolation & purification : Adenoviridae.
- veterinary : Adenoviridae Infections.
- virology : Adenoviridae Infections, Fish Diseases, Fishes.
- Amino Acid Sequence, Animals, Base Sequence, Molecular Sequence Data, Phylogeny, Sequence Analysis, DNA.
Abstract
The organisation of the central part of the genome of a fish adenovirus (AdV) isolated from white sturgeon (Acipenser transmontanus) was studied. The putative genes identified between those of the viral DNA polymerase and the pVIII protein showed no significant difference in size or localisation compared to other known non-mastadenoviral genomes. The complete nucleotide sequences of the hexon and the viral protease genes and the intergenic region in the white sturgeon adenovirus (WSAdV-1) were compared with members of the four official AdV genera. In the case of WSAdV-1, merely two nucleotides separated the hexon and the protease genes, while in the other AdVs certain genus-specific features were recognised. In distance analyses based on complete sequence of the hexon or the protease proteins, the clear separation of five groups was seen corresponding to the four accepted AdV genera and WSAdV-1. Although there were slight differences between the topologies of the phylogenetic trees, the results unambiguously confirmed the distinctness of WSAdV-1 thus supporting the establishment of a new, fifth AdV genus.
PubMed: 14609627
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Phylogenetic analysis of the hexon and protease genes of a fish adenovirus isolated from white sturgeon (Acipenser transmontanus) supports the proposal for a new adenovirus genus.</title><author><name sortKey="Kovacs, Gabor M" sort="Kovacs, Gabor M" uniqKey="Kovacs G" first="Gábor M" last="Kovács">Gábor M. Kovács</name><affiliation wicri:level="1"><nlm:affiliation>Veterinary Medical Research Institute, Hungarian Academy of Sciences, P.O. Box 18, H-1581 Budapest, Hungary. gkovacs@vmri.hu</nlm:affiliation><country xml:lang="fr">Hongrie</country><wicri:regionArea>Veterinary Medical Research Institute, Hungarian Academy of Sciences, P.O. Box 18, H-1581 Budapest</wicri:regionArea><wicri:noRegion>H-1581 Budapest</wicri:noRegion></affiliation></author><author><name sortKey="Lapatra, Scott E" sort="Lapatra, Scott E" uniqKey="Lapatra S" first="Scott E" last="Lapatra">Scott E. Lapatra</name></author><author><name sortKey="D Halluin, Jean Claude" sort="D Halluin, Jean Claude" uniqKey="D Halluin J" first="Jean Claude" last="D'Halluin">Jean Claude D'Halluin</name></author><author><name sortKey="Benko, Maria" sort="Benko, Maria" uniqKey="Benko M" first="Mária" last="Benko">Mária Benko</name></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2003">2003</date><idno type="RBID">pubmed:14609627</idno><idno type="pmid">14609627</idno><idno type="wicri:Area/PubMed/Corpus">000575</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Corpus" wicri:corpus="PubMed">000575</idno><idno type="wicri:Area/PubMed/Curation">000575</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Curation">000575</idno><idno type="wicri:Area/PubMed/Checkpoint">000575</idno><idno type="wicri:explorRef" wicri:stream="Checkpoint" wicri:step="PubMed">000575</idno><idno type="wicri:Area/Ncbi/Merge">000106</idno><idno type="wicri:Area/Ncbi/Curation">000106</idno><idno type="wicri:Area/Ncbi/Checkpoint">000106</idno><idno type="wicri:doubleKey">0168-1702:2003:Kovacs G:phylogenetic:analysis:of</idno><idno type="wicri:Area/Main/Merge">001191</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Phylogenetic analysis of the hexon and protease genes of a fish adenovirus isolated from white sturgeon (Acipenser transmontanus) supports the proposal for a new adenovirus genus.</title><author><name sortKey="Kovacs, Gabor M" sort="Kovacs, Gabor M" uniqKey="Kovacs G" first="Gábor M" last="Kovács">Gábor M. Kovács</name><affiliation wicri:level="1"><nlm:affiliation>Veterinary Medical Research Institute, Hungarian Academy of Sciences, P.O. Box 18, H-1581 Budapest, Hungary. gkovacs@vmri.hu</nlm:affiliation><country xml:lang="fr">Hongrie</country><wicri:regionArea>Veterinary Medical Research Institute, Hungarian Academy of Sciences, P.O. Box 18, H-1581 Budapest</wicri:regionArea><wicri:noRegion>H-1581 Budapest</wicri:noRegion></affiliation></author><author><name sortKey="Lapatra, Scott E" sort="Lapatra, Scott E" uniqKey="Lapatra S" first="Scott E" last="Lapatra">Scott E. Lapatra</name></author><author><name sortKey="D Halluin, Jean Claude" sort="D Halluin, Jean Claude" uniqKey="D Halluin J" first="Jean Claude" last="D'Halluin">Jean Claude D'Halluin</name></author><author><name sortKey="Benko, Maria" sort="Benko, Maria" uniqKey="Benko M" first="Mária" last="Benko">Mária Benko</name></author></analytic><series><title level="j">Virus research</title><idno type="ISSN">0168-1702</idno><imprint><date when="2003" type="published">2003</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Adenoviridae (classification)</term><term>Adenoviridae (genetics)</term><term>Adenoviridae (isolation & purification)</term><term>Adenoviridae Infections (veterinary)</term><term>Adenoviridae Infections (virology)</term><term>Amino Acid Sequence</term><term>Animals</term><term>Base Sequence</term><term>Capsid Proteins (genetics)</term><term>Endopeptidases (genetics)</term><term>Fish Diseases (virology)</term><term>Fishes (virology)</term><term>Molecular Sequence Data</term><term>Phylogeny</term><term>Sequence Analysis, DNA</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Capsid Proteins</term><term>Endopeptidases</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Adenoviridae</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Adenoviridae</term></keywords><keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Adenoviridae</term></keywords><keywords scheme="MESH" qualifier="veterinary" xml:lang="en"><term>Adenoviridae Infections</term></keywords><keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Adenoviridae Infections</term><term>Fish Diseases</term><term>Fishes</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Amino Acid Sequence</term><term>Animals</term><term>Base Sequence</term><term>Molecular Sequence Data</term><term>Phylogeny</term><term>Sequence Analysis, DNA</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">The organisation of the central part of the genome of a fish adenovirus (AdV) isolated from white sturgeon (Acipenser transmontanus) was studied. The putative genes identified between those of the viral DNA polymerase and the pVIII protein showed no significant difference in size or localisation compared to other known non-mastadenoviral genomes. The complete nucleotide sequences of the hexon and the viral protease genes and the intergenic region in the white sturgeon adenovirus (WSAdV-1) were compared with members of the four official AdV genera. In the case of WSAdV-1, merely two nucleotides separated the hexon and the protease genes, while in the other AdVs certain genus-specific features were recognised. In distance analyses based on complete sequence of the hexon or the protease proteins, the clear separation of five groups was seen corresponding to the four accepted AdV genera and WSAdV-1. Although there were slight differences between the topologies of the phylogenetic trees, the results unambiguously confirmed the distinctness of WSAdV-1 thus supporting the establishment of a new, fifth AdV genus.</div></front></TEI></record>Pour manipuler ce document sous Unix (Dilib)
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