Genetic and morphological evidence for introgression between three species of willows.
Identifieur interne : 000E18 ( Main/Corpus ); précédent : 000E17; suivant : 000E19Genetic and morphological evidence for introgression between three species of willows.
Auteurs : Johan Fogelqvist ; Alla V. Verkhozina ; Alexander I. Katyshev ; Pascal Pucholt ; Christina Dixelius ; Ann Christin Rönnberg-W Stljung ; Martin Lascoux ; Sofia BerlinSource :
- BMC evolutionary biology [ 1471-2148 ] ; 2015.
English descriptors
- KwdEn :
- MESH :
- chemical , genetics : DNA, Plant.
- anatomy & histology : Salix.
- classification : Salix.
- genetics : Salix.
- Genotype, Hybridization, Genetic, Microsatellite Repeats, Polymorphism, Single Nucleotide, Siberia.
Abstract
BACKGROUND
Hybridization and introgression are said to occur relatively frequently in plants, and in particular among different species of willows. However, data on the actual frequency of natural hybridization and introgression is rare. Here, we report the first fine-scale genetic analysis of a contact zone shared between the three basket willow species, Salix dasyclados, S. schwerinii and S. viminalis in the vicinity of the Lake Baikal in Southern Siberia. Individuals were sampled in fourteen populations and classified as pure species or hybrids based on a set of morphological characters. They were then genotyped at 384 nuclear SNP and four chloroplast SSR loci. The STRUCTURE and NewHybrids softwares were used to estimate the frequency and direction of hybridization using genotypic data at the nuclear SNP loci.
RESULTS
As many as 19 % of the genotyped individuals were classified as introgressed individuals and these were mainly encountered in the centre of the contact zone. All introgressed individuals were backcrosses to S. viminalis or S. schwerinii and no F1 or F2 hybrids were found. The rest of the genotyped individuals were classified as pure species and formed two clusters, one with S. schwerinii individuals and the other with S. viminalis and S. dasyclados individuals. The two clusters were significantly genetically differentiated, with F ST = 0.333 (0.282-0.382, p < 0.001). In contrast, for the chloroplast haplotypes, no genetic differentiation was observed as they were completely shared between the species. Based on morphological classification only 5 % of the individuals were classified as introgressed individuals, which was much less than what was detected using genotypic data.
CONCLUSIONS
We have discovered a new willow hybrid zone with relatively high frequency of introgressed individuals. The low frequency of F1 hybrids indicates that ongoing hybridization is limited, which could be because of the presence of reproductive barriers or simply because the conditions are not favorable for hybridization. We further conclude that in order to get a complete picture of the species composition of a hybrid zone it is necessary to use a combination of morphological characters and genetic data from both nuclear and chloroplast markers.
DOI: 10.1186/s12862-015-0461-7
PubMed: 26376815
PubMed Central: PMC4574262
Links to Exploration step
pubmed:26376815Le document en format XML
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Box 317, 664033, Irkutsk, Russia. allaverh@list.ru.</nlm:affiliation></affiliation></author><author><name sortKey="Katyshev, Alexander I" sort="Katyshev, Alexander I" uniqKey="Katyshev A" first="Alexander I" last="Katyshev">Alexander I. Katyshev</name><affiliation><nlm:affiliation>Siberian Institute of Plant Physiology & Biochemistry, Irkutsk-33, P.O. Box 317, 664033, Irkutsk, Russia. alex@sifibr.irk.ru.</nlm:affiliation></affiliation></author><author><name sortKey="Pucholt, Pascal" sort="Pucholt, Pascal" uniqKey="Pucholt P" first="Pascal" last="Pucholt">Pascal Pucholt</name><affiliation><nlm:affiliation>Swedish University of Agricultural Sciences, Department of Plant Biology, Uppsala BioCenter, Linnean Centre for Plant Biology, P.O. Box 7080, SE-75007, Uppsala, Sweden. pascal.pucholt@slu.se.</nlm:affiliation></affiliation></author><author><name sortKey="Dixelius, Christina" sort="Dixelius, Christina" uniqKey="Dixelius C" first="Christina" last="Dixelius">Christina Dixelius</name><affiliation><nlm:affiliation>Swedish University of Agricultural Sciences, Department of Plant Biology, Uppsala BioCenter, Linnean Centre for Plant Biology, P.O. Box 7080, SE-75007, Uppsala, Sweden. christina.dixelius@slu.se.</nlm:affiliation></affiliation></author><author><name sortKey="Ronnberg W Stljung, Ann Christin" sort="Ronnberg W Stljung, Ann Christin" uniqKey="Ronnberg W Stljung A" first="Ann Christin" last="Rönnberg-W Stljung">Ann Christin Rönnberg-W Stljung</name><affiliation><nlm:affiliation>Swedish University of Agricultural Sciences, Department of Plant Biology, Uppsala BioCenter, Linnean Centre for Plant Biology, P.O. Box 7080, SE-75007, Uppsala, Sweden. anki.wastljung@slu.se.</nlm:affiliation></affiliation></author><author><name sortKey="Lascoux, Martin" sort="Lascoux, Martin" uniqKey="Lascoux M" first="Martin" last="Lascoux">Martin Lascoux</name><affiliation><nlm:affiliation>Uppsala University, Department of Ecology and Genetics, Evolutionary Biology Centre, Science for Life Laboratory, Norbyvägen 18D, 752 36, Uppsala, Sweden. martin.lascoux@ebc.uu.se.</nlm:affiliation></affiliation></author><author><name sortKey="Berlin, Sofia" sort="Berlin, Sofia" uniqKey="Berlin S" first="Sofia" last="Berlin">Sofia Berlin</name><affiliation><nlm:affiliation>Swedish University of Agricultural Sciences, Department of Plant Biology, Uppsala BioCenter, Linnean Centre for Plant Biology, P.O. Box 7080, SE-75007, Uppsala, Sweden. sofia.berlin@slu.se.</nlm:affiliation></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2015">2015</date><idno type="RBID">pubmed:26376815</idno><idno type="pmid">26376815</idno><idno type="doi">10.1186/s12862-015-0461-7</idno><idno type="pmc">PMC4574262</idno><idno type="wicri:Area/Main/Corpus">000E18</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">000E18</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Genetic and morphological evidence for introgression between three species of willows.</title><author><name sortKey="Fogelqvist, Johan" sort="Fogelqvist, Johan" uniqKey="Fogelqvist J" first="Johan" last="Fogelqvist">Johan Fogelqvist</name><affiliation><nlm:affiliation>Swedish University of Agricultural Sciences, Department of Plant Biology, Uppsala BioCenter, Linnean Centre for Plant Biology, P.O. Box 7080, SE-75007, Uppsala, Sweden. johan.fogelqvist@slu.se.</nlm:affiliation></affiliation></author><author><name sortKey="Verkhozina, Alla V" sort="Verkhozina, Alla V" uniqKey="Verkhozina A" first="Alla V" last="Verkhozina">Alla V. Verkhozina</name><affiliation><nlm:affiliation>Siberian Institute of Plant Physiology & Biochemistry, Irkutsk-33, P.O. Box 317, 664033, Irkutsk, Russia. allaverh@list.ru.</nlm:affiliation></affiliation></author><author><name sortKey="Katyshev, Alexander I" sort="Katyshev, Alexander I" uniqKey="Katyshev A" first="Alexander I" last="Katyshev">Alexander I. Katyshev</name><affiliation><nlm:affiliation>Siberian Institute of Plant Physiology & Biochemistry, Irkutsk-33, P.O. Box 317, 664033, Irkutsk, Russia. alex@sifibr.irk.ru.</nlm:affiliation></affiliation></author><author><name sortKey="Pucholt, Pascal" sort="Pucholt, Pascal" uniqKey="Pucholt P" first="Pascal" last="Pucholt">Pascal Pucholt</name><affiliation><nlm:affiliation>Swedish University of Agricultural Sciences, Department of Plant Biology, Uppsala BioCenter, Linnean Centre for Plant Biology, P.O. Box 7080, SE-75007, Uppsala, Sweden. pascal.pucholt@slu.se.</nlm:affiliation></affiliation></author><author><name sortKey="Dixelius, Christina" sort="Dixelius, Christina" uniqKey="Dixelius C" first="Christina" last="Dixelius">Christina Dixelius</name><affiliation><nlm:affiliation>Swedish University of Agricultural Sciences, Department of Plant Biology, Uppsala BioCenter, Linnean Centre for Plant Biology, P.O. Box 7080, SE-75007, Uppsala, Sweden. christina.dixelius@slu.se.</nlm:affiliation></affiliation></author><author><name sortKey="Ronnberg W Stljung, Ann Christin" sort="Ronnberg W Stljung, Ann Christin" uniqKey="Ronnberg W Stljung A" first="Ann Christin" last="Rönnberg-W Stljung">Ann Christin Rönnberg-W Stljung</name><affiliation><nlm:affiliation>Swedish University of Agricultural Sciences, Department of Plant Biology, Uppsala BioCenter, Linnean Centre for Plant Biology, P.O. Box 7080, SE-75007, Uppsala, Sweden. anki.wastljung@slu.se.</nlm:affiliation></affiliation></author><author><name sortKey="Lascoux, Martin" sort="Lascoux, Martin" uniqKey="Lascoux M" first="Martin" last="Lascoux">Martin Lascoux</name><affiliation><nlm:affiliation>Uppsala University, Department of Ecology and Genetics, Evolutionary Biology Centre, Science for Life Laboratory, Norbyvägen 18D, 752 36, Uppsala, Sweden. martin.lascoux@ebc.uu.se.</nlm:affiliation></affiliation></author><author><name sortKey="Berlin, Sofia" sort="Berlin, Sofia" uniqKey="Berlin S" first="Sofia" last="Berlin">Sofia Berlin</name><affiliation><nlm:affiliation>Swedish University of Agricultural Sciences, Department of Plant Biology, Uppsala BioCenter, Linnean Centre for Plant Biology, P.O. Box 7080, SE-75007, Uppsala, Sweden. sofia.berlin@slu.se.</nlm:affiliation></affiliation></author></analytic><series><title level="j">BMC evolutionary biology</title><idno type="eISSN">1471-2148</idno><imprint><date when="2015" type="published">2015</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>DNA, Plant (genetics)</term><term>Genotype (MeSH)</term><term>Hybridization, Genetic (MeSH)</term><term>Microsatellite Repeats (MeSH)</term><term>Polymorphism, Single Nucleotide (MeSH)</term><term>Salix (anatomy & histology)</term><term>Salix (classification)</term><term>Salix (genetics)</term><term>Siberia (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>DNA, Plant</term></keywords><keywords scheme="MESH" qualifier="anatomy & histology" xml:lang="en"><term>Salix</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Salix</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Salix</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Genotype</term><term>Hybridization, Genetic</term><term>Microsatellite Repeats</term><term>Polymorphism, Single Nucleotide</term><term>Siberia</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p><b>BACKGROUND</b></p><p>Hybridization and introgression are said to occur relatively frequently in plants, and in particular among different species of willows. However, data on the actual frequency of natural hybridization and introgression is rare. Here, we report the first fine-scale genetic analysis of a contact zone shared between the three basket willow species, Salix dasyclados, S. schwerinii and S. viminalis in the vicinity of the Lake Baikal in Southern Siberia. Individuals were sampled in fourteen populations and classified as pure species or hybrids based on a set of morphological characters. They were then genotyped at 384 nuclear SNP and four chloroplast SSR loci. The STRUCTURE and NewHybrids softwares were used to estimate the frequency and direction of hybridization using genotypic data at the nuclear SNP loci.</p></div><div type="abstract" xml:lang="en"><p><b>RESULTS</b></p><p>As many as 19 % of the genotyped individuals were classified as introgressed individuals and these were mainly encountered in the centre of the contact zone. All introgressed individuals were backcrosses to S. viminalis or S. schwerinii and no F1 or F2 hybrids were found. The rest of the genotyped individuals were classified as pure species and formed two clusters, one with S. schwerinii individuals and the other with S. viminalis and S. dasyclados individuals. The two clusters were significantly genetically differentiated, with F ST = 0.333 (0.282-0.382, p < 0.001). In contrast, for the chloroplast haplotypes, no genetic differentiation was observed as they were completely shared between the species. Based on morphological classification only 5 % of the individuals were classified as introgressed individuals, which was much less than what was detected using genotypic data.</p></div><div type="abstract" xml:lang="en"><p><b>CONCLUSIONS</b></p><p>We have discovered a new willow hybrid zone with relatively high frequency of introgressed individuals. The low frequency of F1 hybrids indicates that ongoing hybridization is limited, which could be because of the presence of reproductive barriers or simply because the conditions are not favorable for hybridization. We further conclude that in order to get a complete picture of the species composition of a hybrid zone it is necessary to use a combination of morphological characters and genetic data from both nuclear and chloroplast markers.</p></div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" IndexingMethod="Curated" Owner="NLM"><PMID Version="1">26376815</PMID><DateCompleted><Year>2015</Year><Month>12</Month><Day>18</Day></DateCompleted><DateRevised><Year>2018</Year><Month>12</Month><Day>02</Day></DateRevised><Article PubModel="Electronic"><Journal><ISSN IssnType="Electronic">1471-2148</ISSN><JournalIssue CitedMedium="Internet"><Volume>15</Volume><PubDate><Year>2015</Year><Month>Sep</Month><Day>16</Day></PubDate></JournalIssue><Title>BMC evolutionary biology</Title><ISOAbbreviation>BMC Evol Biol</ISOAbbreviation></Journal><ArticleTitle>Genetic and morphological evidence for introgression between three species of willows.</ArticleTitle><Pagination><MedlinePgn>193</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1186/s12862-015-0461-7</ELocationID><Abstract><AbstractText Label="BACKGROUND" NlmCategory="BACKGROUND">Hybridization and introgression are said to occur relatively frequently in plants, and in particular among different species of willows. However, data on the actual frequency of natural hybridization and introgression is rare. Here, we report the first fine-scale genetic analysis of a contact zone shared between the three basket willow species, Salix dasyclados, S. schwerinii and S. viminalis in the vicinity of the Lake Baikal in Southern Siberia. Individuals were sampled in fourteen populations and classified as pure species or hybrids based on a set of morphological characters. They were then genotyped at 384 nuclear SNP and four chloroplast SSR loci. The STRUCTURE and NewHybrids softwares were used to estimate the frequency and direction of hybridization using genotypic data at the nuclear SNP loci.</AbstractText><AbstractText Label="RESULTS" NlmCategory="RESULTS">As many as 19 % of the genotyped individuals were classified as introgressed individuals and these were mainly encountered in the centre of the contact zone. All introgressed individuals were backcrosses to S. viminalis or S. schwerinii and no F1 or F2 hybrids were found. The rest of the genotyped individuals were classified as pure species and formed two clusters, one with S. schwerinii individuals and the other with S. viminalis and S. dasyclados individuals. The two clusters were significantly genetically differentiated, with F ST = 0.333 (0.282-0.382, p < 0.001). In contrast, for the chloroplast haplotypes, no genetic differentiation was observed as they were completely shared between the species. Based on morphological classification only 5 % of the individuals were classified as introgressed individuals, which was much less than what was detected using genotypic data.</AbstractText><AbstractText Label="CONCLUSIONS" NlmCategory="CONCLUSIONS">We have discovered a new willow hybrid zone with relatively high frequency of introgressed individuals. The low frequency of F1 hybrids indicates that ongoing hybridization is limited, which could be because of the presence of reproductive barriers or simply because the conditions are not favorable for hybridization. We further conclude that in order to get a complete picture of the species composition of a hybrid zone it is necessary to use a combination of morphological characters and genetic data from both nuclear and chloroplast markers.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Fogelqvist</LastName><ForeName>Johan</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>Swedish University of Agricultural Sciences, Department of Plant Biology, Uppsala BioCenter, Linnean Centre for Plant Biology, P.O. Box 7080, SE-75007, Uppsala, Sweden. johan.fogelqvist@slu.se.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Verkhozina</LastName><ForeName>Alla V</ForeName><Initials>AV</Initials><AffiliationInfo><Affiliation>Siberian Institute of Plant Physiology & Biochemistry, Irkutsk-33, P.O. Box 317, 664033, Irkutsk, Russia. allaverh@list.ru.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Katyshev</LastName><ForeName>Alexander I</ForeName><Initials>AI</Initials><AffiliationInfo><Affiliation>Siberian Institute of Plant Physiology & Biochemistry, Irkutsk-33, P.O. Box 317, 664033, Irkutsk, Russia. alex@sifibr.irk.ru.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Pucholt</LastName><ForeName>Pascal</ForeName><Initials>P</Initials><AffiliationInfo><Affiliation>Swedish University of Agricultural Sciences, Department of Plant Biology, Uppsala BioCenter, Linnean Centre for Plant Biology, P.O. Box 7080, SE-75007, Uppsala, Sweden. pascal.pucholt@slu.se.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Dixelius</LastName><ForeName>Christina</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>Swedish University of Agricultural Sciences, Department of Plant Biology, Uppsala BioCenter, Linnean Centre for Plant Biology, P.O. Box 7080, SE-75007, Uppsala, Sweden. christina.dixelius@slu.se.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Rönnberg-Wästljung</LastName><ForeName>Ann Christin</ForeName><Initials>AC</Initials><AffiliationInfo><Affiliation>Swedish University of Agricultural Sciences, Department of Plant Biology, Uppsala BioCenter, Linnean Centre for Plant Biology, P.O. Box 7080, SE-75007, Uppsala, Sweden. anki.wastljung@slu.se.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Lascoux</LastName><ForeName>Martin</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Uppsala University, Department of Ecology and Genetics, Evolutionary Biology Centre, Science for Life Laboratory, Norbyvägen 18D, 752 36, Uppsala, Sweden. martin.lascoux@ebc.uu.se.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Berlin</LastName><ForeName>Sofia</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>Swedish University of Agricultural Sciences, Department of Plant Biology, Uppsala BioCenter, Linnean Centre for Plant Biology, P.O. Box 7080, SE-75007, Uppsala, Sweden. sofia.berlin@slu.se.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2015</Year><Month>09</Month><Day>16</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>BMC Evol Biol</MedlineTA><NlmUniqueID>100966975</NlmUniqueID><ISSNLinking>1471-2148</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D018744">DNA, Plant</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D018744" MajorTopicYN="N">DNA, Plant</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D005838" MajorTopicYN="N">Genotype</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D006824" MajorTopicYN="N">Hybridization, Genetic</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D018895" MajorTopicYN="N">Microsatellite Repeats</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D020641" MajorTopicYN="N">Polymorphism, Single Nucleotide</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D032108" MajorTopicYN="N">Salix</DescriptorName><QualifierName UI="Q000033" MajorTopicYN="Y">anatomy & histology</QualifierName><QualifierName UI="Q000145" MajorTopicYN="N">classification</QualifierName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D012800" MajorTopicYN="N">Siberia</DescriptorName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2015</Year><Month>03</Month><Day>18</Day></PubMedPubDate><PubMedPubDate 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