Molecular inference, multivariate morphometrics and ecological assessment are applied in concert to delimit species in the Russula clavipes complex.
Identifieur interne : 000C45 ( Main/Corpus ); précédent : 000C44; suivant : 000C46Molecular inference, multivariate morphometrics and ecological assessment are applied in concert to delimit species in the Russula clavipes complex.
Auteurs : Slavomír Adam K ; Marek Slovák ; Ursula Eberhardt ; Anna Ronikier ; Teele Jairus ; Felix Hampe ; Annemieke VerbekenSource :
- Mycologia [ 0027-5514 ]
English descriptors
- KwdEn :
- Basidiomycota (classification), Basidiomycota (cytology), Basidiomycota (genetics), Basidiomycota (isolation & purification), Betula (microbiology), Cluster Analysis (MeSH), DNA, Fungal (chemistry), DNA, Fungal (genetics), DNA, Ribosomal Spacer (chemistry), DNA, Ribosomal Spacer (genetics), Microscopy (MeSH), Phylogeny (MeSH), Populus (microbiology), Salix (microbiology), Sequence Analysis, DNA (MeSH), Tracheophyta (microbiology).
- MESH :
- chemical , chemistry : DNA, Fungal, DNA, Ribosomal Spacer.
- classification : Basidiomycota.
- cytology : Basidiomycota.
- genetics : Basidiomycota, DNA, Fungal, DNA, Ribosomal Spacer.
- isolation & purification : Basidiomycota.
- microbiology : Betula, Populus, Salix, Tracheophyta.
- Cluster Analysis, Microscopy, Phylogeny, Sequence Analysis, DNA.
Abstract
Species of Russula subsect. Xerampelinae are notoriously difficult to identify and name and have not been subject to molecular study. A group of species, referred to here as the R. clavipes complex, growing in association with Salix, Betula and Populus as well as coniferous tree species from temperate to arctic and alpine habitats, were examined. Analyses of the nuc rDNA internal transcribed spacer (ITS) region and a numerical analysis of morphological characters were used. The R. clavipes complex is a monophyletic group within Russula subsect. Xerampelinae, according to molecular results. The complex includes three species: R. nuoljae is a phylogenetically and morphologically well-supported species while the other two, R. clavipes and R. pascua, are similar based on ITS data and morphology but separate based on their ecology. Russula pseudoolivascens is conspecific with R. clavipes Several combinations of characters traditionally used in the taxonomy of R. subsect. Xerampelinae are inappropriate for species delimitation in this group and the adequacy of the ITS for species identification in this group is discussed. Detailed microscopic observations on the type collection of R. nuoljae are presented and illustrated, along with a key to the European members of R. subsect. Xerampelinae.
DOI: 10.3852/15-194
PubMed: 27091390
Links to Exploration step
pubmed:27091390Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Molecular inference, multivariate morphometrics and ecological assessment are applied in concert to delimit species in the Russula clavipes complex.</title><author><name sortKey="Adam K, Slavomir" sort="Adam K, Slavomir" uniqKey="Adam K S" first="Slavomír" last="Adam K">Slavomír Adam K</name><affiliation><nlm:affiliation>Institute of Botany SAS, Dúbravská cesta 14, SK-845 23 Bratislava, Slovakia slavomir.adamcik@savba.sk.</nlm:affiliation></affiliation></author><author><name sortKey="Slovak, Marek" sort="Slovak, Marek" uniqKey="Slovak M" first="Marek" last="Slovák">Marek Slovák</name><affiliation><nlm:affiliation>Institute of Botany SAS, Dúbravská cesta 14, SK-845 23 Bratislava, Slovakia.</nlm:affiliation></affiliation></author><author><name sortKey="Eberhardt, Ursula" sort="Eberhardt, Ursula" uniqKey="Eberhardt U" first="Ursula" last="Eberhardt">Ursula Eberhardt</name><affiliation><nlm:affiliation>Staatliches Museum für Naturkunde Stuttgart, Rosenstein 1, DE-70191 Stuttgart, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Ronikier, Anna" sort="Ronikier, Anna" uniqKey="Ronikier A" first="Anna" last="Ronikier">Anna Ronikier</name><affiliation><nlm:affiliation>Department of Mycology, W. Szafer Institute of Botany, Polish Academy of Sciences, Lubicz 46, PL-31-512 Cracow, Poland.</nlm:affiliation></affiliation></author><author><name sortKey="Jairus, Teele" sort="Jairus, Teele" uniqKey="Jairus T" first="Teele" last="Jairus">Teele Jairus</name><affiliation><nlm:affiliation>Institute of Ecology and Earth Sciences, University of Tartu, Lai 40, Tartu 51005, Estonia.</nlm:affiliation></affiliation></author><author><name sortKey="Hampe, Felix" sort="Hampe, Felix" uniqKey="Hampe F" first="Felix" last="Hampe">Felix Hampe</name><affiliation><nlm:affiliation>Ghent University, K.L. Ledeganckstraat 35, B-9000 Ghent, Belgium.</nlm:affiliation></affiliation></author><author><name sortKey="Verbeken, Annemieke" sort="Verbeken, Annemieke" uniqKey="Verbeken A" first="Annemieke" last="Verbeken">Annemieke Verbeken</name><affiliation><nlm:affiliation>Ghent University, K.L. Ledeganckstraat 35, B-9000 Ghent, Belgium.</nlm:affiliation></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2016">2016 Jul-Aug</date><idno type="RBID">pubmed:27091390</idno><idno type="pmid">27091390</idno><idno type="doi">10.3852/15-194</idno><idno type="wicri:Area/Main/Corpus">000C45</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">000C45</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Molecular inference, multivariate morphometrics and ecological assessment are applied in concert to delimit species in the Russula clavipes complex.</title><author><name sortKey="Adam K, Slavomir" sort="Adam K, Slavomir" uniqKey="Adam K S" first="Slavomír" last="Adam K">Slavomír Adam K</name><affiliation><nlm:affiliation>Institute of Botany SAS, Dúbravská cesta 14, SK-845 23 Bratislava, Slovakia slavomir.adamcik@savba.sk.</nlm:affiliation></affiliation></author><author><name sortKey="Slovak, Marek" sort="Slovak, Marek" uniqKey="Slovak M" first="Marek" last="Slovák">Marek Slovák</name><affiliation><nlm:affiliation>Institute of Botany SAS, Dúbravská cesta 14, SK-845 23 Bratislava, Slovakia.</nlm:affiliation></affiliation></author><author><name sortKey="Eberhardt, Ursula" sort="Eberhardt, Ursula" uniqKey="Eberhardt U" first="Ursula" last="Eberhardt">Ursula Eberhardt</name><affiliation><nlm:affiliation>Staatliches Museum für Naturkunde Stuttgart, Rosenstein 1, DE-70191 Stuttgart, Germany.</nlm:affiliation></affiliation></author><author><name sortKey="Ronikier, Anna" sort="Ronikier, Anna" uniqKey="Ronikier A" first="Anna" last="Ronikier">Anna Ronikier</name><affiliation><nlm:affiliation>Department of Mycology, W. Szafer Institute of Botany, Polish Academy of Sciences, Lubicz 46, PL-31-512 Cracow, Poland.</nlm:affiliation></affiliation></author><author><name sortKey="Jairus, Teele" sort="Jairus, Teele" uniqKey="Jairus T" first="Teele" last="Jairus">Teele Jairus</name><affiliation><nlm:affiliation>Institute of Ecology and Earth Sciences, University of Tartu, Lai 40, Tartu 51005, Estonia.</nlm:affiliation></affiliation></author><author><name sortKey="Hampe, Felix" sort="Hampe, Felix" uniqKey="Hampe F" first="Felix" last="Hampe">Felix Hampe</name><affiliation><nlm:affiliation>Ghent University, K.L. Ledeganckstraat 35, B-9000 Ghent, Belgium.</nlm:affiliation></affiliation></author><author><name sortKey="Verbeken, Annemieke" sort="Verbeken, Annemieke" uniqKey="Verbeken A" first="Annemieke" last="Verbeken">Annemieke Verbeken</name><affiliation><nlm:affiliation>Ghent University, K.L. Ledeganckstraat 35, B-9000 Ghent, Belgium.</nlm:affiliation></affiliation></author></analytic><series><title level="j">Mycologia</title><idno type="ISSN">0027-5514</idno></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Basidiomycota (classification)</term><term>Basidiomycota (cytology)</term><term>Basidiomycota (genetics)</term><term>Basidiomycota (isolation & purification)</term><term>Betula (microbiology)</term><term>Cluster Analysis (MeSH)</term><term>DNA, Fungal (chemistry)</term><term>DNA, Fungal (genetics)</term><term>DNA, Ribosomal Spacer (chemistry)</term><term>DNA, Ribosomal Spacer (genetics)</term><term>Microscopy (MeSH)</term><term>Phylogeny (MeSH)</term><term>Populus (microbiology)</term><term>Salix (microbiology)</term><term>Sequence Analysis, DNA (MeSH)</term><term>Tracheophyta (microbiology)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en"><term>DNA, Fungal</term><term>DNA, Ribosomal Spacer</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Basidiomycota</term></keywords><keywords scheme="MESH" qualifier="cytology" xml:lang="en"><term>Basidiomycota</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Basidiomycota</term><term>DNA, Fungal</term><term>DNA, Ribosomal Spacer</term></keywords><keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Basidiomycota</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Betula</term><term>Populus</term><term>Salix</term><term>Tracheophyta</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Cluster Analysis</term><term>Microscopy</term><term>Phylogeny</term><term>Sequence Analysis, DNA</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Species of Russula subsect. Xerampelinae are notoriously difficult to identify and name and have not been subject to molecular study. A group of species, referred to here as the R. clavipes complex, growing in association with Salix, Betula and Populus as well as coniferous tree species from temperate to arctic and alpine habitats, were examined. Analyses of the nuc rDNA internal transcribed spacer (ITS) region and a numerical analysis of morphological characters were used. The R. clavipes complex is a monophyletic group within Russula subsect. Xerampelinae, according to molecular results. The complex includes three species: R. nuoljae is a phylogenetically and morphologically well-supported species while the other two, R. clavipes and R. pascua, are similar based on ITS data and morphology but separate based on their ecology. Russula pseudoolivascens is conspecific with R. clavipes Several combinations of characters traditionally used in the taxonomy of R. subsect. Xerampelinae are inappropriate for species delimitation in this group and the adequacy of the ITS for species identification in this group is discussed. Detailed microscopic observations on the type collection of R. nuoljae are presented and illustrated, along with a key to the European members of R. subsect. Xerampelinae.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">27091390</PMID><DateCompleted><Year>2018</Year><Month>01</Month><Day>16</Day></DateCompleted><DateRevised><Year>2019</Year><Month>12</Month><Day>10</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Print">0027-5514</ISSN><JournalIssue CitedMedium="Print"><Volume>108</Volume><Issue>4</Issue><PubDate><MedlineDate>2016 Jul-Aug</MedlineDate></PubDate></JournalIssue><Title>Mycologia</Title><ISOAbbreviation>Mycologia</ISOAbbreviation></Journal><ArticleTitle>Molecular inference, multivariate morphometrics and ecological assessment are applied in concert to delimit species in the Russula clavipes complex.</ArticleTitle><Pagination><MedlinePgn>716-30</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.3852/15-194</ELocationID><Abstract><AbstractText>Species of Russula subsect. Xerampelinae are notoriously difficult to identify and name and have not been subject to molecular study. A group of species, referred to here as the R. clavipes complex, growing in association with Salix, Betula and Populus as well as coniferous tree species from temperate to arctic and alpine habitats, were examined. Analyses of the nuc rDNA internal transcribed spacer (ITS) region and a numerical analysis of morphological characters were used. The R. clavipes complex is a monophyletic group within Russula subsect. Xerampelinae, according to molecular results. The complex includes three species: R. nuoljae is a phylogenetically and morphologically well-supported species while the other two, R. clavipes and R. pascua, are similar based on ITS data and morphology but separate based on their ecology. Russula pseudoolivascens is conspecific with R. clavipes Several combinations of characters traditionally used in the taxonomy of R. subsect. Xerampelinae are inappropriate for species delimitation in this group and the adequacy of the ITS for species identification in this group is discussed. Detailed microscopic observations on the type collection of R. nuoljae are presented and illustrated, along with a key to the European members of R. subsect. Xerampelinae.</AbstractText><CopyrightInformation>© 2016 by The Mycological Society of America.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Adamčík</LastName><ForeName>Slavomír</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>Institute of Botany SAS, Dúbravská cesta 14, SK-845 23 Bratislava, Slovakia slavomir.adamcik@savba.sk.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Slovák</LastName><ForeName>Marek</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Institute of Botany SAS, Dúbravská cesta 14, SK-845 23 Bratislava, Slovakia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Eberhardt</LastName><ForeName>Ursula</ForeName><Initials>U</Initials><AffiliationInfo><Affiliation>Staatliches Museum für Naturkunde Stuttgart, Rosenstein 1, DE-70191 Stuttgart, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ronikier</LastName><ForeName>Anna</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Department of Mycology, W. Szafer Institute of Botany, Polish Academy of Sciences, Lubicz 46, PL-31-512 Cracow, Poland.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Jairus</LastName><ForeName>Teele</ForeName><Initials>T</Initials><AffiliationInfo><Affiliation>Institute of Ecology and Earth Sciences, University of Tartu, Lai 40, Tartu 51005, Estonia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Hampe</LastName><ForeName>Felix</ForeName><Initials>F</Initials><AffiliationInfo><Affiliation>Ghent University, K.L. Ledeganckstraat 35, B-9000 Ghent, Belgium.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Verbeken</LastName><ForeName>Annemieke</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Ghent University, K.L. Ledeganckstraat 35, B-9000 Ghent, Belgium.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2016</Year><Month>04</Month><Day>18</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Mycologia</MedlineTA><NlmUniqueID>0400764</NlmUniqueID><ISSNLinking>0027-5514</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004271">DNA, Fungal</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D021903">DNA, Ribosomal Spacer</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D001487" MajorTopicYN="N">Basidiomycota</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="Y">classification</QualifierName><QualifierName UI="Q000166" MajorTopicYN="N">cytology</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000302" MajorTopicYN="N">isolation & purification</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D029662" MajorTopicYN="N">Betula</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D016000" MajorTopicYN="N">Cluster Analysis</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D004271" MajorTopicYN="N">DNA, Fungal</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D021903" MajorTopicYN="N">DNA, Ribosomal Spacer</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D008853" MajorTopicYN="N">Microscopy</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010802" MajorTopicYN="N">Phylogeny</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D032108" MajorTopicYN="N">Salix</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D017422" MajorTopicYN="N">Sequence Analysis, DNA</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D064028" MajorTopicYN="N">Tracheophyta</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="Y">DNA barcode</Keyword><Keyword MajorTopicYN="Y">Europe</Keyword><Keyword MajorTopicYN="Y">R. pascua</Keyword><Keyword MajorTopicYN="Y">Russula nuoljae</Keyword><Keyword MajorTopicYN="Y">ectomycorrhizal fungi</Keyword><Keyword MajorTopicYN="Y">haplotype analysis</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2015</Year><Month>07</Month><Day>17</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2016</Year><Month>02</Month><Day>29</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2016</Year><Month>4</Month><Day>20</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2016</Year><Month>4</Month><Day>20</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2018</Year><Month>1</Month><Day>18</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">27091390</ArticleId><ArticleId IdType="pii">15-194</ArticleId><ArticleId IdType="doi">10.3852/15-194</ArticleId></ArticleIdList></PubmedData></pubmed></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Bois/explor/WillowV1/Data/Main/Corpus
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000C45 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Corpus/biblio.hfd -nk 000C45 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Bois
|area= WillowV1
|flux= Main
|étape= Corpus
|type= RBID
|clé= pubmed:27091390
|texte= Molecular inference, multivariate morphometrics and ecological assessment are applied in concert to delimit species in the Russula clavipes complex.
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Corpus/RBID.i -Sk "pubmed:27091390" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Main/Corpus/biblio.hfd \
| NlmPubMed2Wicri -a WillowV1
| This area was generated with Dilib version V0.6.37. |  |