In silico assessment data of allergenicity and cross-reactivity of NP24 epitopes from Solanum lycopersicum (Tomato) fruit.
Identifieur interne : 000052 ( Main/Curation ); précédent : 000051; suivant : 000053In silico assessment data of allergenicity and cross-reactivity of NP24 epitopes from Solanum lycopersicum (Tomato) fruit.
Auteurs : Majeed Jamakhani [Inde] ; S S Lele [Inde] ; Bhagwan Rekadwad [Inde]Source :
- Data in brief [ 2352-3409 ] ; 2018.
Abstract
This paper describes data on allergies caused by food (vegetable) and their negative impact on the nutritional balance of the human body. Allergic responses to vegetables such as tomatoes, capsicum and spinach are next to fish, eggs and nuts. Epitopes such as NP24 (allergens) are one of the salt-induced allergenic proteins found in the thaumatin-like protein (TLP) family. The mechanism of allergenicity of TLP found in Solanum lycopersicum (Tomato) fruit is poorly studied. Here we demonstrated allergenicity conferred by the NP24 protein found in Tomato. The data on the cross-reactivity of NP24 protein was generated using Allergen Online and Allermatch tools. Tomato allergenic protein epitope shows a significant identity of with allergens reported in Capsicum, Olive, Kiwi, Tobacco and Banana allergens. Hence, the datasets of sequences, comparative analysis and homology epitope mapping over three dimensional (3D) structures revealed that NP24 has higher cross-reactivity to Capsicum and Tobacco proteins. Thus, this data probably act as limelight for planning wet lab experiments.
DOI: 10.1016/j.dib.2018.09.074
PubMed: 30377651
PubMed Central: PMC6203245
Links toward previous steps (curation, corpus...)
- to stream Main, to step Corpus: Pour aller vers cette notice dans l'étape Curation :000052
Links to Exploration step
pubmed:30377651Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en"><i>In silico</i> assessment data of allergenicity and cross-reactivity of NP24 epitopes from <i>Solanum lycopersicum</i> (Tomato) fruit.</title><author><name sortKey="Jamakhani, Majeed" sort="Jamakhani, Majeed" uniqKey="Jamakhani M" first="Majeed" last="Jamakhani">Majeed Jamakhani</name><affiliation wicri:level="1"><nlm:affiliation>Department of Food Engineering and Technology, Institute of Chemical Technology, Nathalal Parikh Marg, Matunga (E), Mumbai 400019, India.</nlm:affiliation><country xml:lang="fr">Inde</country><wicri:regionArea>Department of Food Engineering and Technology, Institute of Chemical Technology, Nathalal Parikh Marg, Matunga (E), Mumbai 400019</wicri:regionArea></affiliation></author><author><name sortKey="Lele, S S" sort="Lele, S S" uniqKey="Lele S" first="S S" last="Lele">S S Lele</name><affiliation wicri:level="1"><nlm:affiliation>Department of Food Engineering and Technology, Institute of Chemical Technology, Nathalal Parikh Marg, Matunga (E), Mumbai 400019, India.</nlm:affiliation><country xml:lang="fr">Inde</country><wicri:regionArea>Department of Food Engineering and Technology, Institute of Chemical Technology, Nathalal Parikh Marg, Matunga (E), Mumbai 400019</wicri:regionArea></affiliation></author><author><name sortKey="Rekadwad, Bhagwan" sort="Rekadwad, Bhagwan" uniqKey="Rekadwad B" first="Bhagwan" last="Rekadwad">Bhagwan Rekadwad</name><affiliation wicri:level="1"><nlm:affiliation>National Centre for Microbial Resource, National Centre for Cell Science, NCCS Complex, Savitribai Phule Pune University Campus, Ganeshkhind Road, Pune 411007, Maharashtra, India.</nlm:affiliation><country xml:lang="fr">Inde</country><wicri:regionArea>National Centre for Microbial Resource, National Centre for Cell Science, NCCS Complex, Savitribai Phule Pune University Campus, Ganeshkhind Road, Pune 411007, Maharashtra</wicri:regionArea></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2018">2018</date><idno type="RBID">pubmed:30377651</idno><idno type="pmid">30377651</idno><idno type="doi">10.1016/j.dib.2018.09.074</idno><idno type="pmc">PMC6203245</idno><idno type="wicri:Area/Main/Corpus">000052</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">000052</idno><idno type="wicri:Area/Main/Curation">000052</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">000052</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en"><i>In silico</i> assessment data of allergenicity and cross-reactivity of NP24 epitopes from <i>Solanum lycopersicum</i> (Tomato) fruit.</title><author><name sortKey="Jamakhani, Majeed" sort="Jamakhani, Majeed" uniqKey="Jamakhani M" first="Majeed" last="Jamakhani">Majeed Jamakhani</name><affiliation wicri:level="1"><nlm:affiliation>Department of Food Engineering and Technology, Institute of Chemical Technology, Nathalal Parikh Marg, Matunga (E), Mumbai 400019, India.</nlm:affiliation><country xml:lang="fr">Inde</country><wicri:regionArea>Department of Food Engineering and Technology, Institute of Chemical Technology, Nathalal Parikh Marg, Matunga (E), Mumbai 400019</wicri:regionArea></affiliation></author><author><name sortKey="Lele, S S" sort="Lele, S S" uniqKey="Lele S" first="S S" last="Lele">S S Lele</name><affiliation wicri:level="1"><nlm:affiliation>Department of Food Engineering and Technology, Institute of Chemical Technology, Nathalal Parikh Marg, Matunga (E), Mumbai 400019, India.</nlm:affiliation><country xml:lang="fr">Inde</country><wicri:regionArea>Department of Food Engineering and Technology, Institute of Chemical Technology, Nathalal Parikh Marg, Matunga (E), Mumbai 400019</wicri:regionArea></affiliation></author><author><name sortKey="Rekadwad, Bhagwan" sort="Rekadwad, Bhagwan" uniqKey="Rekadwad B" first="Bhagwan" last="Rekadwad">Bhagwan Rekadwad</name><affiliation wicri:level="1"><nlm:affiliation>National Centre for Microbial Resource, National Centre for Cell Science, NCCS Complex, Savitribai Phule Pune University Campus, Ganeshkhind Road, Pune 411007, Maharashtra, India.</nlm:affiliation><country xml:lang="fr">Inde</country><wicri:regionArea>National Centre for Microbial Resource, National Centre for Cell Science, NCCS Complex, Savitribai Phule Pune University Campus, Ganeshkhind Road, Pune 411007, Maharashtra</wicri:regionArea></affiliation></author></analytic><series><title level="j">Data in brief</title><idno type="eISSN">2352-3409</idno><imprint><date when="2018" type="published">2018</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">This paper describes data on allergies caused by food (vegetable) and their negative impact on the nutritional balance of the human body. Allergic responses to vegetables such as tomatoes, capsicum and spinach are next to fish, eggs and nuts. Epitopes such as NP24 (allergens) are one of the salt-induced allergenic proteins found in the thaumatin-like protein (TLP) family. The mechanism of allergenicity of TLP found in <i>Solanum lycopersicum</i> (Tomato) fruit is poorly studied. Here we demonstrated allergenicity conferred by the NP24 protein found in Tomato. The data on the cross-reactivity of NP24 protein was generated using Allergen Online and Allermatch tools. Tomato allergenic protein epitope shows a significant identity of with allergens reported in Capsicum, Olive, Kiwi, Tobacco and Banana allergens. Hence, the datasets of sequences, comparative analysis and homology epitope mapping over three dimensional (3D) structures revealed that NP24 has higher cross-reactivity to Capsicum and Tobacco proteins. Thus, this data probably act as limelight for planning wet lab experiments.</div></front></TEI><pubmed><MedlineCitation Status="PubMed-not-MEDLINE" Owner="NLM"><PMID Version="1">30377651</PMID><DateRevised><Year>2020</Year><Month>10</Month><Day>01</Day></DateRevised><Article PubModel="Electronic-eCollection"><Journal><ISSN IssnType="Electronic">2352-3409</ISSN><JournalIssue CitedMedium="Internet"><Volume>21</Volume><PubDate><Year>2018</Year><Month>Dec</Month></PubDate></JournalIssue><Title>Data in brief</Title><ISOAbbreviation>Data Brief</ISOAbbreviation></Journal><ArticleTitle><i>In silico</i> assessment data of allergenicity and cross-reactivity of NP24 epitopes from <i>Solanum lycopersicum</i> (Tomato) fruit.</ArticleTitle><Pagination><MedlinePgn>660-674</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1016/j.dib.2018.09.074</ELocationID><Abstract><AbstractText>This paper describes data on allergies caused by food (vegetable) and their negative impact on the nutritional balance of the human body. Allergic responses to vegetables such as tomatoes, capsicum and spinach are next to fish, eggs and nuts. Epitopes such as NP24 (allergens) are one of the salt-induced allergenic proteins found in the thaumatin-like protein (TLP) family. The mechanism of allergenicity of TLP found in <i>Solanum lycopersicum</i> (Tomato) fruit is poorly studied. Here we demonstrated allergenicity conferred by the NP24 protein found in Tomato. The data on the cross-reactivity of NP24 protein was generated using Allergen Online and Allermatch tools. Tomato allergenic protein epitope shows a significant identity of with allergens reported in Capsicum, Olive, Kiwi, Tobacco and Banana allergens. Hence, the datasets of sequences, comparative analysis and homology epitope mapping over three dimensional (3D) structures revealed that NP24 has higher cross-reactivity to Capsicum and Tobacco proteins. Thus, this data probably act as limelight for planning wet lab experiments.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Jamakhani</LastName><ForeName>Majeed</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Department of Food Engineering and Technology, Institute of Chemical Technology, Nathalal Parikh Marg, Matunga (E), Mumbai 400019, India.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Lele</LastName><ForeName>S S</ForeName><Initials>SS</Initials><AffiliationInfo><Affiliation>Department of Food Engineering and Technology, Institute of Chemical Technology, Nathalal Parikh Marg, Matunga (E), Mumbai 400019, India.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Rekadwad</LastName><ForeName>Bhagwan</ForeName><Initials>B</Initials><AffiliationInfo><Affiliation>National Centre for Microbial Resource, National Centre for Cell Science, NCCS Complex, Savitribai Phule Pune University Campus, Ganeshkhind Road, Pune 411007, Maharashtra, India.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2018</Year><Month>10</Month><Day>03</Day></ArticleDate></Article><MedlineJournalInfo><Country>Netherlands</Country><MedlineTA>Data Brief</MedlineTA><NlmUniqueID>101654995</NlmUniqueID><ISSNLinking>2352-3409</ISSNLinking></MedlineJournalInfo><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Epitope mapping</Keyword><Keyword MajorTopicYN="N">Fruit and vegetable allergies</Keyword><Keyword MajorTopicYN="N">IgE antibody</Keyword><Keyword MajorTopicYN="N">NP24 protein</Keyword><Keyword MajorTopicYN="N">Oral allergy syndrome</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2018</Year><Month>07</Month><Day>09</Day></PubMedPubDate><PubMedPubDate PubStatus="revised"><Year>2018</Year><Month>07</Month><Day>26</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2018</Year><Month>09</Month><Day>25</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2018</Year><Month>11</Month><Day>1</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2018</Year><Month>11</Month><Day>1</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2018</Year><Month>11</Month><Day>1</Day><Hour>6</Hour><Minute>1</Minute></PubMedPubDate></History><PublicationStatus>epublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">30377651</ArticleId><ArticleId IdType="doi">10.1016/j.dib.2018.09.074</ArticleId><ArticleId IdType="pii">S2352-3409(18)31152-1</ArticleId><ArticleId IdType="pmc">PMC6203245</ArticleId></ArticleIdList><ReferenceList><Reference><Citation>Allergy. 2004 May;59(5):479-81</Citation><ArticleIdList><ArticleId IdType="pubmed">15080826</ArticleId></ArticleIdList></Reference><Reference><Citation>Allergy. 2010 Sep;65(9):1182-8</Citation><ArticleIdList><ArticleId IdType="pubmed">20180791</ArticleId></ArticleIdList></Reference><Reference><Citation>Virology. 1970 Feb;40(2):190-211</Citation><ArticleIdList><ArticleId IdType="pubmed">4191688</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Immunol. 2014 Feb;57(2):119-28</Citation><ArticleIdList><ArticleId IdType="pubmed">24091295</ArticleId></ArticleIdList></Reference><Reference><Citation>Int Arch Allergy Immunol. 2001 Dec;126(4):294-9</Citation><ArticleIdList><ArticleId IdType="pubmed">11815736</ArticleId></ArticleIdList></Reference><Reference><Citation>Allergy. 1988 Apr;43(3):206-13</Citation><ArticleIdList><ArticleId IdType="pubmed">3377144</ArticleId></ArticleIdList></Reference><Reference><Citation>Ann Hum Biol. 2014 Nov-Dec;41(6):548-53</Citation><ArticleIdList><ArticleId IdType="pubmed">24734931</ArticleId></ArticleIdList></Reference><Reference><Citation>Allergy. 2005 Nov;60(11):1357-60</Citation><ArticleIdList><ArticleId IdType="pubmed">16197466</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Physiol. 2006 Jun;141(2):793-801</Citation><ArticleIdList><ArticleId IdType="pubmed">16648221</ArticleId></ArticleIdList></Reference><Reference><Citation>World Allergy Organ J. 2013 Dec 04;6(1):21</Citation><ArticleIdList><ArticleId IdType="pubmed">24304599</ArticleId></ArticleIdList></Reference><Reference><Citation>J Allergy Clin Immunol. 2008 Apr;121(4):847-52.e7</Citation><ArticleIdList><ArticleId IdType="pubmed">18395549</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Cell Rep. 2010 May;29(5):419-36</Citation><ArticleIdList><ArticleId IdType="pubmed">20204373</ArticleId></ArticleIdList></Reference><Reference><Citation>Ann Allergy. 1988 Dec;61(6 Pt 2):47-52</Citation><ArticleIdList><ArticleId IdType="pubmed">3264668</ArticleId></ArticleIdList></Reference><Reference><Citation>Phytochemistry. 1997 Apr;44(7):1241-5</Citation><ArticleIdList><ArticleId IdType="pubmed">9115696</ArticleId></ArticleIdList></Reference><Reference><Citation>J Mol Evol. 2006 Jul;63(1):12-29</Citation><ArticleIdList><ArticleId IdType="pubmed">16736102</ArticleId></ArticleIdList></Reference><Reference><Citation>C R Acad Sci Hebd Seances Acad Sci D. 1970 May 11;270(19):2383-6</Citation><ArticleIdList><ArticleId IdType="pubmed">4997619</ArticleId></ArticleIdList></Reference><Reference><Citation>J Allergy Clin Immunol. 2007 Sep;120(3):518-25</Citation><ArticleIdList><ArticleId IdType="pubmed">17689599</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Physiol. 1993 Mar;101(3):873-880</Citation><ArticleIdList><ArticleId IdType="pubmed">12231738</ArticleId></ArticleIdList></Reference><Reference><Citation>FEBS Lett. 2004 Aug 13;572(1-3):3-7</Citation><ArticleIdList><ArticleId IdType="pubmed">15304314</ArticleId></ArticleIdList></Reference><Reference><Citation>J Mol Biol. 2003 Jun 13;329(4):721-30</Citation><ArticleIdList><ArticleId IdType="pubmed">12787673</ArticleId></ArticleIdList></Reference><Reference><Citation>J Allergy Clin Immunol. 2006 Jan;117(1):141-7</Citation><ArticleIdList><ArticleId IdType="pubmed">16387597</ArticleId></ArticleIdList></Reference><Reference><Citation>Annu Rev Biochem. 1990;59:873-907</Citation><ArticleIdList><ArticleId IdType="pubmed">2197993</ArticleId></ArticleIdList></Reference><Reference><Citation>Allergy. 2005 Apr;60(4):538-9</Citation><ArticleIdList><ArticleId IdType="pubmed">15727592</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Mol Biol. 1988 Sep;10(5):401-12</Citation><ArticleIdList><ArticleId IdType="pubmed">24277588</ArticleId></ArticleIdList></Reference><Reference><Citation>Planta. 2008 Oct;228(5):883-90</Citation><ArticleIdList><ArticleId IdType="pubmed">18651170</ArticleId></ArticleIdList></Reference><Reference><Citation>Gene. 1982 Apr;18(1):1-12</Citation><ArticleIdList><ArticleId IdType="pubmed">7049841</ArticleId></ArticleIdList></Reference><Reference><Citation>Clin Exp Allergy. 2006 Mar;36(3):359-68</Citation><ArticleIdList><ArticleId IdType="pubmed">16499648</ArticleId></ArticleIdList></Reference></ReferenceList></PubmedData></pubmed></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Bois/explor/ThaumatinV1/Data/Main/Curation
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000052 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Curation/biblio.hfd -nk 000052 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Bois
|area= ThaumatinV1
|flux= Main
|étape= Curation
|type= RBID
|clé= pubmed:30377651
|texte= In silico assessment data of allergenicity and cross-reactivity of NP24 epitopes from Solanum lycopersicum (Tomato) fruit.
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Curation/RBID.i -Sk "pubmed:30377651" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Main/Curation/biblio.hfd \
| NlmPubMed2Wicri -a ThaumatinV1
| This area was generated with Dilib version V0.6.37. |  |