Serveur d'exploration Thomatine

Attention, ce site est en cours de développement !
Attention, site généré par des moyens informatiques à partir de corpus bruts.
Les informations ne sont donc pas validées.

Structure of thaumatin in a hexagonal space group: comparison of packing contacts in four crystal lattices.

Identifieur interne : 000457 ( Main/Corpus ); précédent : 000456; suivant : 000458

Structure of thaumatin in a hexagonal space group: comparison of packing contacts in four crystal lattices.

Auteurs : Christophe Charron ; Richard Giegé ; Bernard Lorber

Source :

RBID : pubmed:14684896

English descriptors

Abstract

The intensely sweet protein thaumatin has been crystallized in a hexagonal lattice after a temperature shift from 293 to 277 K. The structure of the protein in the new crystal was solved at 1.6 A resolution. The protein fold is identical to that found in three other crystal forms grown in the presence of crystallizing agents of differing chemical natures. The proportions of lattice interactions involving hydrogen bonds, hydrophobic or ionic groups differ greatly from one form to another. Moreover, the distribution of acidic and basic residues taking part in contacts also varies. The hexagonal packing is characterized by the presence of channels parallel to the c axis that are so wide that protein molecules can diffuse through them.

DOI: 10.1107/s0907444903022613
PubMed: 14684896

Links to Exploration step

pubmed:14684896

Le document en format XML

<record>
<TEI>
<teiHeader>
<fileDesc>
<titleStmt>
<title xml:lang="en">Structure of thaumatin in a hexagonal space group: comparison of packing contacts in four crystal lattices.</title>
<author>
<name sortKey="Charron, Christophe" sort="Charron, Christophe" uniqKey="Charron C" first="Christophe" last="Charron">Christophe Charron</name>
<affiliation>
<nlm:affiliation>Département 'Mécanismes et Macromolécules de la Synthèse Protéique et Cristallogenèse' UPR 9002, Institut de Biologie Moléculaire et Cellulaire du CNRS, 15Rue René Descartes, F-67084 Strasbourg CEDEX, France.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Giege, Richard" sort="Giege, Richard" uniqKey="Giege R" first="Richard" last="Giegé">Richard Giegé</name>
</author>
<author>
<name sortKey="Lorber, Bernard" sort="Lorber, Bernard" uniqKey="Lorber B" first="Bernard" last="Lorber">Bernard Lorber</name>
</author>
</titleStmt>
<publicationStmt>
<idno type="wicri:source">PubMed</idno>
<date when="2004">2004</date>
<idno type="RBID">pubmed:14684896</idno>
<idno type="pmid">14684896</idno>
<idno type="doi">10.1107/s0907444903022613</idno>
<idno type="wicri:Area/Main/Corpus">000457</idno>
<idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">000457</idno>
</publicationStmt>
<sourceDesc>
<biblStruct>
<analytic>
<title xml:lang="en">Structure of thaumatin in a hexagonal space group: comparison of packing contacts in four crystal lattices.</title>
<author>
<name sortKey="Charron, Christophe" sort="Charron, Christophe" uniqKey="Charron C" first="Christophe" last="Charron">Christophe Charron</name>
<affiliation>
<nlm:affiliation>Département 'Mécanismes et Macromolécules de la Synthèse Protéique et Cristallogenèse' UPR 9002, Institut de Biologie Moléculaire et Cellulaire du CNRS, 15Rue René Descartes, F-67084 Strasbourg CEDEX, France.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Giege, Richard" sort="Giege, Richard" uniqKey="Giege R" first="Richard" last="Giegé">Richard Giegé</name>
</author>
<author>
<name sortKey="Lorber, Bernard" sort="Lorber, Bernard" uniqKey="Lorber B" first="Bernard" last="Lorber">Bernard Lorber</name>
</author>
</analytic>
<series>
<title level="j">Acta crystallographica. Section D, Biological crystallography</title>
<idno type="ISSN">0907-4449</idno>
<imprint>
<date when="2004" type="published">2004</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc>
<textClass>
<keywords scheme="KwdEn" xml:lang="en">
<term>Crystallization (MeSH)</term>
<term>Crystallography, X-Ray (MeSH)</term>
<term>Hydrogen Bonding (MeSH)</term>
<term>Models, Molecular (MeSH)</term>
<term>Plant Proteins (chemistry)</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en">
<term>Plant Proteins</term>
</keywords>
<keywords scheme="MESH" xml:lang="en">
<term>Crystallization</term>
<term>Crystallography, X-Ray</term>
<term>Hydrogen Bonding</term>
<term>Models, Molecular</term>
</keywords>
</textClass>
</profileDesc>
</teiHeader>
<front>
<div type="abstract" xml:lang="en">The intensely sweet protein thaumatin has been crystallized in a hexagonal lattice after a temperature shift from 293 to 277 K. The structure of the protein in the new crystal was solved at 1.6 A resolution. The protein fold is identical to that found in three other crystal forms grown in the presence of crystallizing agents of differing chemical natures. The proportions of lattice interactions involving hydrogen bonds, hydrophobic or ionic groups differ greatly from one form to another. Moreover, the distribution of acidic and basic residues taking part in contacts also varies. The hexagonal packing is characterized by the presence of channels parallel to the c axis that are so wide that protein molecules can diffuse through them.</div>
</front>
</TEI>
<pubmed>
<MedlineCitation Status="MEDLINE" Owner="NLM">
<PMID Version="1">14684896</PMID>
<DateCompleted>
<Year>2004</Year>
<Month>08</Month>
<Day>31</Day>
</DateCompleted>
<DateRevised>
<Year>2019</Year>
<Month>06</Month>
<Day>05</Day>
</DateRevised>
<Article PubModel="Print-Electronic">
<Journal>
<ISSN IssnType="Print">0907-4449</ISSN>
<JournalIssue CitedMedium="Print">
<Volume>60</Volume>
<Issue>Pt 1</Issue>
<PubDate>
<Year>2004</Year>
<Month>Jan</Month>
</PubDate>
</JournalIssue>
<Title>Acta crystallographica. Section D, Biological crystallography</Title>
<ISOAbbreviation>Acta Crystallogr D Biol Crystallogr</ISOAbbreviation>
</Journal>
<ArticleTitle>Structure of thaumatin in a hexagonal space group: comparison of packing contacts in four crystal lattices.</ArticleTitle>
<Pagination>
<MedlinePgn>83-9</MedlinePgn>
</Pagination>
<Abstract>
<AbstractText>The intensely sweet protein thaumatin has been crystallized in a hexagonal lattice after a temperature shift from 293 to 277 K. The structure of the protein in the new crystal was solved at 1.6 A resolution. The protein fold is identical to that found in three other crystal forms grown in the presence of crystallizing agents of differing chemical natures. The proportions of lattice interactions involving hydrogen bonds, hydrophobic or ionic groups differ greatly from one form to another. Moreover, the distribution of acidic and basic residues taking part in contacts also varies. The hexagonal packing is characterized by the presence of channels parallel to the c axis that are so wide that protein molecules can diffuse through them.</AbstractText>
</Abstract>
<AuthorList CompleteYN="Y">
<Author ValidYN="Y">
<LastName>Charron</LastName>
<ForeName>Christophe</ForeName>
<Initials>C</Initials>
<AffiliationInfo>
<Affiliation>Département 'Mécanismes et Macromolécules de la Synthèse Protéique et Cristallogenèse' UPR 9002, Institut de Biologie Moléculaire et Cellulaire du CNRS, 15Rue René Descartes, F-67084 Strasbourg CEDEX, France.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Giegé</LastName>
<ForeName>Richard</ForeName>
<Initials>R</Initials>
</Author>
<Author ValidYN="Y">
<LastName>Lorber</LastName>
<ForeName>Bernard</ForeName>
<Initials>B</Initials>
</Author>
</AuthorList>
<Language>eng</Language>
<PublicationTypeList>
<PublicationType UI="D003160">Comparative Study</PublicationType>
<PublicationType UI="D016428">Journal Article</PublicationType>
<PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType>
</PublicationTypeList>
<ArticleDate DateType="Electronic">
<Year>2003</Year>
<Month>12</Month>
<Day>18</Day>
</ArticleDate>
</Article>
<MedlineJournalInfo>
<Country>United States</Country>
<MedlineTA>Acta Crystallogr D Biol Crystallogr</MedlineTA>
<NlmUniqueID>9305878</NlmUniqueID>
<ISSNLinking>0907-4449</ISSNLinking>
</MedlineJournalInfo>
<ChemicalList>
<Chemical>
<RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D010940">Plant Proteins</NameOfSubstance>
</Chemical>
<Chemical>
<RegistryNumber>53850-34-3</RegistryNumber>
<NameOfSubstance UI="C003427">thaumatin protein, plant</NameOfSubstance>
</Chemical>
</ChemicalList>
<CitationSubset>IM</CitationSubset>
<MeshHeadingList>
<MeshHeading>
<DescriptorName UI="D003460" MajorTopicYN="N">Crystallization</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D018360" MajorTopicYN="N">Crystallography, X-Ray</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D006860" MajorTopicYN="N">Hydrogen Bonding</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D008958" MajorTopicYN="N">Models, Molecular</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D010940" MajorTopicYN="N">Plant Proteins</DescriptorName>
<QualifierName UI="Q000737" MajorTopicYN="Y">chemistry</QualifierName>
</MeshHeading>
</MeshHeadingList>
</MedlineCitation>
<PubmedData>
<History>
<PubMedPubDate PubStatus="received">
<Year>2003</Year>
<Month>08</Month>
<Day>06</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="accepted">
<Year>2003</Year>
<Month>10</Month>
<Day>09</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="pubmed">
<Year>2003</Year>
<Month>12</Month>
<Day>20</Day>
<Hour>5</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="medline">
<Year>2004</Year>
<Month>9</Month>
<Day>1</Day>
<Hour>5</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="entrez">
<Year>2003</Year>
<Month>12</Month>
<Day>20</Day>
<Hour>5</Hour>
<Minute>0</Minute>
</PubMedPubDate>
</History>
<PublicationStatus>ppublish</PublicationStatus>
<ArticleIdList>
<ArticleId IdType="pubmed">14684896</ArticleId>
<ArticleId IdType="pii">S0907444903022613</ArticleId>
<ArticleId IdType="doi">10.1107/s0907444903022613</ArticleId>
</ArticleIdList>
</PubmedData>
</pubmed>
</record>

Pour manipuler ce document sous Unix (Dilib)

EXPLOR_STEP=$WICRI_ROOT/Bois/explor/ThaumatinV1/Data/Main/Corpus
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000457 | SxmlIndent | more

Ou

HfdSelect -h $EXPLOR_AREA/Data/Main/Corpus/biblio.hfd -nk 000457 | SxmlIndent | more

Pour mettre un lien sur cette page dans le réseau Wicri

{{Explor lien
   |wiki=    Bois
   |area=    ThaumatinV1
   |flux=    Main
   |étape=   Corpus
   |type=    RBID
   |clé=     pubmed:14684896
   |texte=   Structure of thaumatin in a hexagonal space group: comparison of packing contacts in four crystal lattices.
}}

Pour générer des pages wiki

HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Corpus/RBID.i   -Sk "pubmed:14684896" \
       | HfdSelect -Kh $EXPLOR_AREA/Data/Main/Corpus/biblio.hfd   \
       | NlmPubMed2Wicri -a ThaumatinV1 

Wicri

This area was generated with Dilib version V0.6.37.
Data generation: Tue Nov 3 10:25:16 2020. Site generation: Tue Nov 3 10:26:24 2020