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Cloning, characterization, and bacterial over-expression of an osmotin-like protein gene from Solanum nigrum L. with antifungal activity against three necrotrophic fungi.

Identifieur interne : 000148 ( Main/Corpus ); précédent : 000147; suivant : 000149

Cloning, characterization, and bacterial over-expression of an osmotin-like protein gene from Solanum nigrum L. with antifungal activity against three necrotrophic fungi.

Auteurs : Supriyo Chowdhury ; Arpita Basu ; Surekha Kundu

Source :

RBID : pubmed:25572937

English descriptors

Abstract

A new osmotin-like protein gene from Solanum nigrum L. var indica (SindOLP) was cloned and overexpressed in Escherichia coli. The full-length intron-less gene is 744 bp, encoding a mature protein of 247 amino acids with a molecular mass of 26 kDa. The protein has an N-terminal cleavable signal sequence of 21 amino acids. There is the Thaumatin family signature pattern, with one each of amidation, N-myristoylation, casein kinase II phosphorylation, tyrosine kinase phosphorylation, and protein kinase C phosphorylation sites. Hydropathy plot showed that it has six transmembrane helices. It has antifungal activity and can permeabilize fungal hyphae and spores. SindOLP is most active at pH 8, 25 °C and its antifungal activity is retained after 75 °C for 30 min. SindOLP inhibits fungal spore germination. The protein however lacks glucanase activity. The potential for SindOLP in developing fungus-resistant, transgenic crops is discussed.

DOI: 10.1007/s12033-014-9831-4
PubMed: 25572937

Links to Exploration step

pubmed:25572937

Le document en format XML

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<div type="abstract" xml:lang="en">A new osmotin-like protein gene from Solanum nigrum L. var indica (SindOLP) was cloned and overexpressed in Escherichia coli. The full-length intron-less gene is 744 bp, encoding a mature protein of 247 amino acids with a molecular mass of 26 kDa. The protein has an N-terminal cleavable signal sequence of 21 amino acids. There is the Thaumatin family signature pattern, with one each of amidation, N-myristoylation, casein kinase II phosphorylation, tyrosine kinase phosphorylation, and protein kinase C phosphorylation sites. Hydropathy plot showed that it has six transmembrane helices. It has antifungal activity and can permeabilize fungal hyphae and spores. SindOLP is most active at pH 8, 25 °C and its antifungal activity is retained after 75 °C for 30 min. SindOLP inhibits fungal spore germination. The protein however lacks glucanase activity. The potential for SindOLP in developing fungus-resistant, transgenic crops is discussed.</div>
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<ReferenceList>
<Reference>
<Citation>Springerplus. 2013 Dec;2(1):117</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">23543825</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Transgenic Res. 2011 Apr;20(2):231-46</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">20549349</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Funct Integr Genomics. 2012 Nov;12(4):625-34</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">23053199</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Microb Cell Fact. 2008 Mar 11;7:7</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">18334031</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Protoplasma. 2014 Sep;251(5):1175-90</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">24590594</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Phytopathology. 2003 Dec;93(12):1505-12</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">18943614</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Planta. 2012 Dec;236(6):1909-25</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">22936305</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>J Plant Physiol. 2007 Mar;164(3):238-52</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">16542753</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Biotechnol Lett. 2011 Mar;33(3):539-43</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">21046196</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>PLoS One. 2013 Dec 19;8(12):e83963</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">24367621</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>BMC Plant Biol. 2008 Jul 08;8:75</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">18611251</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Phytopathology. 2005 May;95(5):506-11</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">18943315</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Protoplasma. 2010 Sep;245(1-4):133-41</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">20467880</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Biochim Biophys Acta. 2011 Oct;1808(10):2501-7</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">21798235</ArticleId>
</ArticleIdList>
</Reference>
</ReferenceList>
</PubmedData>
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