Genome-wide identification, characterization and expression analysis of the TLP gene family in melon (Cucumis melo L.).
Identifieur interne : 000019 ( Main/Corpus ); précédent : 000018; suivant : 000020Genome-wide identification, characterization and expression analysis of the TLP gene family in melon (Cucumis melo L.).
Auteurs : Yarong Liu ; Jun Cui ; Xiaoxu Zhou ; Yushi Luan ; Feishi LuanSource :
- Genomics [ 1089-8646 ] ; 2020.
Abstract
Thaumatin-like proteins (TLPs), which belong to pathogenesis-related (PR) protein family 5 (PR5), are involved in plant host defense and various developmental processes. The functions of the TLP family have been extensively discussed in multiple organisms, whereas the detailed information of this family in melon has not been reported yet. In this study, we identified 28 TLP genes in the melon genome and a N-terminal signal peptide was found highly conserved within each member of this family. Phylogeny analysis indicated that TLPs from melon and other plant species were clustered into ten groups. Twelve segmental and seven tandem duplication gene pairs that underwent purifying selection were identified. TLP genes expressed differentially in different tissues/organs, and were significantly induced after Podosphaera xanthii infection. TLPs in breeding line MR-1 tend to express early after pathogen infection compared with cultivar Top Mark. Our study provides a comprehensive understanding of the melon TLP family and demonstrates their potential roles in disease resistance, therefore provides more reference for further research.
DOI: 10.1016/j.ygeno.2020.02.001
PubMed: 32044327
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Electronic address: ysluan@dlut.edu.cn.</nlm:affiliation></affiliation></author><author><name sortKey="Luan, Feishi" sort="Luan, Feishi" uniqKey="Luan F" first="Feishi" last="Luan">Feishi Luan</name><affiliation><nlm:affiliation>Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (Northeast Region), Ministry of Agriculture, Harbin 150030, China; College of Horticulture and Landscape Architecture, Northeast Agricultural University, Harbin 150030, China. Electronic address: luanfeishi@neau.edu.cn.</nlm:affiliation></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2020">2020</date><idno type="RBID">pubmed:32044327</idno><idno type="pmid">32044327</idno><idno type="doi">10.1016/j.ygeno.2020.02.001</idno><idno type="wicri:Area/Main/Corpus">000019</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">000019</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Genome-wide identification, characterization and expression analysis of the TLP gene family in melon (Cucumis melo L.).</title><author><name sortKey="Liu, Yarong" sort="Liu, Yarong" uniqKey="Liu Y" first="Yarong" last="Liu">Yarong Liu</name><affiliation><nlm:affiliation>School of Bioengineering, Dalian University of Technology, Dalian 116033, China.</nlm:affiliation></affiliation></author><author><name sortKey="Cui, Jun" sort="Cui, Jun" uniqKey="Cui J" first="Jun" last="Cui">Jun Cui</name><affiliation><nlm:affiliation>School of Bioengineering, Dalian University of Technology, Dalian 116033, China.</nlm:affiliation></affiliation></author><author><name sortKey="Zhou, Xiaoxu" sort="Zhou, Xiaoxu" uniqKey="Zhou X" first="Xiaoxu" last="Zhou">Xiaoxu Zhou</name><affiliation><nlm:affiliation>School of Bioengineering, Dalian University of Technology, Dalian 116033, China.</nlm:affiliation></affiliation></author><author><name sortKey="Luan, Yushi" sort="Luan, Yushi" uniqKey="Luan Y" first="Yushi" last="Luan">Yushi Luan</name><affiliation><nlm:affiliation>School of Bioengineering, Dalian University of Technology, Dalian 116033, China. Electronic address: ysluan@dlut.edu.cn.</nlm:affiliation></affiliation></author><author><name sortKey="Luan, Feishi" sort="Luan, Feishi" uniqKey="Luan F" first="Feishi" last="Luan">Feishi Luan</name><affiliation><nlm:affiliation>Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (Northeast Region), Ministry of Agriculture, Harbin 150030, China; College of Horticulture and Landscape Architecture, Northeast Agricultural University, Harbin 150030, China. Electronic address: luanfeishi@neau.edu.cn.</nlm:affiliation></affiliation></author></analytic><series><title level="j">Genomics</title><idno type="eISSN">1089-8646</idno><imprint><date when="2020" type="published">2020</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Thaumatin-like proteins (TLPs), which belong to pathogenesis-related (PR) protein family 5 (PR5), are involved in plant host defense and various developmental processes. The functions of the TLP family have been extensively discussed in multiple organisms, whereas the detailed information of this family in melon has not been reported yet. In this study, we identified 28 TLP genes in the melon genome and a N-terminal signal peptide was found highly conserved within each member of this family. Phylogeny analysis indicated that TLPs from melon and other plant species were clustered into ten groups. Twelve segmental and seven tandem duplication gene pairs that underwent purifying selection were identified. TLP genes expressed differentially in different tissues/organs, and were significantly induced after Podosphaera xanthii infection. TLPs in breeding line MR-1 tend to express early after pathogen infection compared with cultivar Top Mark. Our study provides a comprehensive understanding of the melon TLP family and demonstrates their potential roles in disease resistance, therefore provides more reference for further research.</div></front></TEI><pubmed><MedlineCitation Status="In-Process" Owner="NLM"><PMID Version="1">32044327</PMID><DateRevised><Year>2020</Year><Month>08</Month><Day>07</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1089-8646</ISSN><JournalIssue CitedMedium="Internet"><Volume>112</Volume><Issue>3</Issue><PubDate><Year>2020</Year><Month>05</Month></PubDate></JournalIssue><Title>Genomics</Title><ISOAbbreviation>Genomics</ISOAbbreviation></Journal><ArticleTitle>Genome-wide identification, characterization and expression analysis of the TLP gene family in melon (Cucumis melo L.).</ArticleTitle><Pagination><MedlinePgn>2499-2509</MedlinePgn></Pagination><ELocationID EIdType="pii" ValidYN="Y">S0888-7543(19)30792-X</ELocationID><ELocationID EIdType="doi" ValidYN="Y">10.1016/j.ygeno.2020.02.001</ELocationID><Abstract><AbstractText>Thaumatin-like proteins (TLPs), which belong to pathogenesis-related (PR) protein family 5 (PR5), are involved in plant host defense and various developmental processes. The functions of the TLP family have been extensively discussed in multiple organisms, whereas the detailed information of this family in melon has not been reported yet. In this study, we identified 28 TLP genes in the melon genome and a N-terminal signal peptide was found highly conserved within each member of this family. Phylogeny analysis indicated that TLPs from melon and other plant species were clustered into ten groups. Twelve segmental and seven tandem duplication gene pairs that underwent purifying selection were identified. TLP genes expressed differentially in different tissues/organs, and were significantly induced after Podosphaera xanthii infection. TLPs in breeding line MR-1 tend to express early after pathogen infection compared with cultivar Top Mark. Our study provides a comprehensive understanding of the melon TLP family and demonstrates their potential roles in disease resistance, therefore provides more reference for further research.</AbstractText><CopyrightInformation>Copyright © 2020 Elsevier Inc. All rights reserved.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Liu</LastName><ForeName>Yarong</ForeName><Initials>Y</Initials><AffiliationInfo><Affiliation>School of Bioengineering, Dalian University of Technology, Dalian 116033, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Cui</LastName><ForeName>Jun</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>School of Bioengineering, Dalian University of Technology, Dalian 116033, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zhou</LastName><ForeName>Xiaoxu</ForeName><Initials>X</Initials><AffiliationInfo><Affiliation>School of Bioengineering, Dalian University of Technology, Dalian 116033, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Luan</LastName><ForeName>Yushi</ForeName><Initials>Y</Initials><AffiliationInfo><Affiliation>School of Bioengineering, Dalian University of Technology, Dalian 116033, China. Electronic address: ysluan@dlut.edu.cn.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Luan</LastName><ForeName>Feishi</ForeName><Initials>F</Initials><AffiliationInfo><Affiliation>Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (Northeast Region), Ministry of Agriculture, Harbin 150030, China; College of Horticulture and Landscape Architecture, Northeast Agricultural University, Harbin 150030, China. Electronic address: luanfeishi@neau.edu.cn.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2020</Year><Month>02</Month><Day>08</Day></ArticleDate></Article><MedlineJournalInfo><Country>United States</Country><MedlineTA>Genomics</MedlineTA><NlmUniqueID>8800135</NlmUniqueID><ISSNLinking>0888-7543</ISSNLinking></MedlineJournalInfo><CitationSubset>IM</CitationSubset><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="Y">Genome-wide</Keyword><Keyword MajorTopicYN="Y">Melon</Keyword><Keyword MajorTopicYN="Y">PR5</Keyword><Keyword MajorTopicYN="Y">Powdery mildew</Keyword><Keyword MajorTopicYN="Y">Resistance</Keyword><Keyword MajorTopicYN="Y">Thaumatin-like protein</Keyword></KeywordList><CoiStatement>Declaration of Competing Interest The authors declare no conflict of interest.</CoiStatement></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2019</Year><Month>10</Month><Day>17</Day></PubMedPubDate><PubMedPubDate PubStatus="revised"><Year>2020</Year><Month>02</Month><Day>04</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2020</Year><Month>02</Month><Day>06</Day></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2020</Year><Month>2</Month><Day>12</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2020</Year><Month>2</Month><Day>12</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2020</Year><Month>2</Month><Day>12</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">32044327</ArticleId><ArticleId IdType="pii">S0888-7543(19)30792-X</ArticleId><ArticleId IdType="doi">10.1016/j.ygeno.2020.02.001</ArticleId></ArticleIdList></PubmedData></pubmed></record>Pour manipuler ce document sous Unix (Dilib)
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