Host-Pathogen Interactions between Xanthomonas fragariae and Its Host Fragaria × ananassa Investigated with a Dual RNA-Seq Analysis.
Identifieur interne : 000007 ( Main/Corpus ); précédent : 000006; suivant : 000008Host-Pathogen Interactions between Xanthomonas fragariae and Its Host Fragaria × ananassa Investigated with a Dual RNA-Seq Analysis.
Auteurs : Michael Gétaz ; Joanna Puławska ; Theo H M. Smits ; Joël F. PothierSource :
- Microorganisms [ 2076-2607 ] ; 2020.
Abstract
Strawberry is economically important and widely grown, but susceptible to a large variety of phytopathogenic organisms. Among them, Xanthomonas fragariae is a quarantine bacterial pathogen threatening strawberry productions by causing angular leaf spots. Using whole transcriptome sequencing, the gene expression of both plant and bacteria in planta was analyzed at two time points, 12 and 29 days post inoculation, in order to compare the pathogen and host response between the stages of early visible and of well-developed symptoms. Among 28,588 known genes in strawberry and 4046 known genes in X. fragariae expressed at both time points, a total of 361 plant and 144 bacterial genes were significantly differentially expressed, respectively. The identified higher expressed genes in the plants were pathogen-associated molecular pattern receptors and pathogenesis-related thaumatin encoding genes, whereas the more expressed early genes were related to chloroplast metabolism as well as photosynthesis related coding genes. Most X. fragariae genes involved in host interaction, recognition, and pathogenesis were lower expressed at late-phase infection. This study gives a first insight into the interaction of X. fragariae with its host. The strawberry plant changed gene expression in order to consistently adapt its metabolism with the progression of infection.
DOI: 10.3390/microorganisms8081253
PubMed: 32824783
PubMed Central: PMC7465820
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Host-Pathogen Interactions between <i>Xanthomonas fragariae</i> and Its Host <i>Fragaria</i> × <i>ananassa</i> Investigated with a Dual RNA-Seq Analysis.</title><author><name sortKey="Getaz, Michael" sort="Getaz, Michael" uniqKey="Getaz M" first="Michael" last="Gétaz">Michael Gétaz</name><affiliation><nlm:affiliation>Environmental Genomics and Systems Biology Research Group, Institute of Natural Resource Sciences, Zurich University of Applied Sciences (ZHAW), CH-8820 Wädenswil, Switzerland.</nlm:affiliation></affiliation></author><author><name sortKey="Pulawska, Joanna" sort="Pulawska, Joanna" uniqKey="Pulawska J" first="Joanna" last="Puławska">Joanna Puławska</name><affiliation><nlm:affiliation>Department of Phytopathology, Research Institute of Horticulture, 96-100 Skierniewice, Poland.</nlm:affiliation></affiliation></author><author><name sortKey="Smits, Theo H M" sort="Smits, Theo H M" uniqKey="Smits T" first="Theo H M" last="Smits">Theo H M. Smits</name><affiliation><nlm:affiliation>Environmental Genomics and Systems Biology Research Group, Institute of Natural Resource Sciences, Zurich University of Applied Sciences (ZHAW), CH-8820 Wädenswil, Switzerland.</nlm:affiliation></affiliation></author><author><name sortKey="Pothier, Joel F" sort="Pothier, Joel F" uniqKey="Pothier J" first="Joël F" last="Pothier">Joël F. Pothier</name><affiliation><nlm:affiliation>Environmental Genomics and Systems Biology Research Group, Institute of Natural Resource Sciences, Zurich University of Applied Sciences (ZHAW), CH-8820 Wädenswil, Switzerland.</nlm:affiliation></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2020">2020</date><idno type="RBID">pubmed:32824783</idno><idno type="pmid">32824783</idno><idno type="doi">10.3390/microorganisms8081253</idno><idno type="pmc">PMC7465820</idno><idno type="wicri:Area/Main/Corpus">000007</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">000007</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Host-Pathogen Interactions between <i>Xanthomonas fragariae</i> and Its Host <i>Fragaria</i> × <i>ananassa</i> Investigated with a Dual RNA-Seq Analysis.</title><author><name sortKey="Getaz, Michael" sort="Getaz, Michael" uniqKey="Getaz M" first="Michael" last="Gétaz">Michael Gétaz</name><affiliation><nlm:affiliation>Environmental Genomics and Systems Biology Research Group, Institute of Natural Resource Sciences, Zurich University of Applied Sciences (ZHAW), CH-8820 Wädenswil, Switzerland.</nlm:affiliation></affiliation></author><author><name sortKey="Pulawska, Joanna" sort="Pulawska, Joanna" uniqKey="Pulawska J" first="Joanna" last="Puławska">Joanna Puławska</name><affiliation><nlm:affiliation>Department of Phytopathology, Research Institute of Horticulture, 96-100 Skierniewice, Poland.</nlm:affiliation></affiliation></author><author><name sortKey="Smits, Theo H M" sort="Smits, Theo H M" uniqKey="Smits T" first="Theo H M" last="Smits">Theo H M. Smits</name><affiliation><nlm:affiliation>Environmental Genomics and Systems Biology Research Group, Institute of Natural Resource Sciences, Zurich University of Applied Sciences (ZHAW), CH-8820 Wädenswil, Switzerland.</nlm:affiliation></affiliation></author><author><name sortKey="Pothier, Joel F" sort="Pothier, Joel F" uniqKey="Pothier J" first="Joël F" last="Pothier">Joël F. Pothier</name><affiliation><nlm:affiliation>Environmental Genomics and Systems Biology Research Group, Institute of Natural Resource Sciences, Zurich University of Applied Sciences (ZHAW), CH-8820 Wädenswil, Switzerland.</nlm:affiliation></affiliation></author></analytic><series><title level="j">Microorganisms</title><idno type="ISSN">2076-2607</idno><imprint><date when="2020" type="published">2020</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Strawberry is economically important and widely grown, but susceptible to a large variety of phytopathogenic organisms. Among them, <i>Xanthomonas fragariae</i> is a quarantine bacterial pathogen threatening strawberry productions by causing angular leaf spots. Using whole transcriptome sequencing, the gene expression of both plant and bacteria in planta was analyzed at two time points, 12 and 29 days post inoculation, in order to compare the pathogen and host response between the stages of early visible and of well-developed symptoms. Among 28,588 known genes in strawberry and 4046 known genes in <i>X. fragariae</i> expressed at both time points, a total of 361 plant and 144 bacterial genes were significantly differentially expressed, respectively. The identified higher expressed genes in the plants were pathogen-associated molecular pattern receptors and pathogenesis-related thaumatin encoding genes, whereas the more expressed early genes were related to chloroplast metabolism as well as photosynthesis related coding genes. Most <i>X. fragariae</i> genes involved in host interaction, recognition, and pathogenesis were lower expressed at late-phase infection. This study gives a first insight into the interaction of <i>X. fragariae</i> with its host. The strawberry plant changed gene expression in order to consistently adapt its metabolism with the progression of infection.</div></front></TEI><pubmed><MedlineCitation Status="PubMed-not-MEDLINE" Owner="NLM"><PMID Version="1">32824783</PMID><DateRevised><Year>2020</Year><Month>09</Month><Day>28</Day></DateRevised><Article PubModel="Electronic"><Journal><ISSN IssnType="Print">2076-2607</ISSN><JournalIssue CitedMedium="Print"><Volume>8</Volume><Issue>8</Issue><PubDate><Year>2020</Year><Month>Aug</Month><Day>18</Day></PubDate></JournalIssue><Title>Microorganisms</Title><ISOAbbreviation>Microorganisms</ISOAbbreviation></Journal><ArticleTitle>Host-Pathogen Interactions between <i>Xanthomonas fragariae</i> and Its Host <i>Fragaria</i> × <i>ananassa</i> Investigated with a Dual RNA-Seq Analysis.</ArticleTitle><ELocationID EIdType="pii" ValidYN="Y">E1253</ELocationID><ELocationID EIdType="doi" ValidYN="Y">10.3390/microorganisms8081253</ELocationID><Abstract><AbstractText>Strawberry is economically important and widely grown, but susceptible to a large variety of phytopathogenic organisms. Among them, <i>Xanthomonas fragariae</i> is a quarantine bacterial pathogen threatening strawberry productions by causing angular leaf spots. Using whole transcriptome sequencing, the gene expression of both plant and bacteria in planta was analyzed at two time points, 12 and 29 days post inoculation, in order to compare the pathogen and host response between the stages of early visible and of well-developed symptoms. Among 28,588 known genes in strawberry and 4046 known genes in <i>X. fragariae</i> expressed at both time points, a total of 361 plant and 144 bacterial genes were significantly differentially expressed, respectively. The identified higher expressed genes in the plants were pathogen-associated molecular pattern receptors and pathogenesis-related thaumatin encoding genes, whereas the more expressed early genes were related to chloroplast metabolism as well as photosynthesis related coding genes. Most <i>X. fragariae</i> genes involved in host interaction, recognition, and pathogenesis were lower expressed at late-phase infection. This study gives a first insight into the interaction of <i>X. fragariae</i> with its host. The strawberry plant changed gene expression in order to consistently adapt its metabolism with the progression of infection.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Gétaz</LastName><ForeName>Michael</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Environmental Genomics and Systems Biology Research Group, Institute of Natural Resource Sciences, Zurich University of Applied Sciences (ZHAW), CH-8820 Wädenswil, Switzerland.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Puławska</LastName><ForeName>Joanna</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>Department of Phytopathology, Research Institute of Horticulture, 96-100 Skierniewice, Poland.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Smits</LastName><ForeName>Theo H M</ForeName><Initials>THM</Initials><Identifier Source="ORCID">0000-0002-1237-235X</Identifier><AffiliationInfo><Affiliation>Environmental Genomics and Systems Biology Research Group, Institute of Natural Resource Sciences, Zurich University of Applied Sciences (ZHAW), CH-8820 Wädenswil, Switzerland.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Pothier</LastName><ForeName>Joël F</ForeName><Initials>JF</Initials><Identifier Source="ORCID">0000-0002-9604-7780</Identifier><AffiliationInfo><Affiliation>Environmental Genomics and Systems Biology Research Group, Institute of Natural Resource Sciences, Zurich University of Applied Sciences (ZHAW), CH-8820 Wädenswil, Switzerland.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><GrantList CompleteYN="Y"><Grant><GrantID>613678</GrantID><Agency>Seventh Framework Programme</Agency><Country></Country></Grant></GrantList><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate 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|texte= Host-Pathogen Interactions between Xanthomonas fragariae and Its Host Fragaria × ananassa Investigated with a Dual RNA-Seq Analysis.
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Corpus/RBID.i -Sk "pubmed:32824783" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Main/Corpus/biblio.hfd \
| NlmPubMed2Wicri -a ThaumatinV1
| This area was generated with Dilib version V0.6.37. |  |