Molecular evolution of VEF-domain-containing PcG genes in plants.
Identifieur interne : 003557 ( Main/Exploration ); précédent : 003556; suivant : 003558Molecular evolution of VEF-domain-containing PcG genes in plants.
Auteurs : Ling-Jing Chen [États-Unis] ; Zhao-Yan Diao [États-Unis] ; Chelsea Specht [États-Unis] ; Z Renee Sung [États-Unis]Source :
- Molecular plant [ 1674-2052 ] ; 2009.
Descripteurs français
- KwdFr :
- Données de séquences moléculaires (MeSH), Facteurs de transcription (classification), Facteurs de transcription (composition chimique), Facteurs de transcription (génétique), Modèles génétiques (MeSH), Phylogenèse (MeSH), Protéines d'Arabidopsis (classification), Protéines d'Arabidopsis (composition chimique), Protéines d'Arabidopsis (génétique), Protéines de liaison à l'ADN (MeSH), Protéines de répression (classification), Protéines de répression (composition chimique), Protéines de répression (génétique), Protéines de transport (classification), Protéines de transport (composition chimique), Protéines de transport (génétique), Protéines nucléaires (classification), Protéines nucléaires (composition chimique), Protéines nucléaires (génétique), Protéines végétales (classification), Protéines végétales (composition chimique), Protéines végétales (génétique), Similitude de séquences d'acides aminés (MeSH), Structure tertiaire des protéines (MeSH), Séquence d'acides aminés (MeSH), Évolution moléculaire (MeSH).
- MESH :
- classification : Facteurs de transcription, Protéines d'Arabidopsis, Protéines de répression, Protéines de transport, Protéines nucléaires, Protéines végétales.
- composition chimique : Facteurs de transcription, Protéines d'Arabidopsis, Protéines de répression, Protéines de transport, Protéines nucléaires, Protéines végétales.
- génétique : Facteurs de transcription, Protéines d'Arabidopsis, Protéines de répression, Protéines de transport, Protéines nucléaires, Protéines végétales.
- Données de séquences moléculaires, Modèles génétiques, Phylogenèse, Protéines de liaison à l'ADN, Similitude de séquences d'acides aminés, Structure tertiaire des protéines, Séquence d'acides aminés, Évolution moléculaire.
English descriptors
- KwdEn :
- Amino Acid Sequence (MeSH), Arabidopsis Proteins (chemistry), Arabidopsis Proteins (classification), Arabidopsis Proteins (genetics), Carrier Proteins (chemistry), Carrier Proteins (classification), Carrier Proteins (genetics), DNA-Binding Proteins (MeSH), Evolution, Molecular (MeSH), Models, Genetic (MeSH), Molecular Sequence Data (MeSH), Nuclear Proteins (chemistry), Nuclear Proteins (classification), Nuclear Proteins (genetics), Phylogeny (MeSH), Plant Proteins (chemistry), Plant Proteins (classification), Plant Proteins (genetics), Protein Structure, Tertiary (MeSH), Repressor Proteins (chemistry), Repressor Proteins (classification), Repressor Proteins (genetics), Sequence Homology, Amino Acid (MeSH), Transcription Factors (chemistry), Transcription Factors (classification), Transcription Factors (genetics).
- MESH :
- chemical , chemistry : Arabidopsis Proteins, Carrier Proteins, Nuclear Proteins, Plant Proteins, Repressor Proteins, Transcription Factors.
- chemical , classification : Arabidopsis Proteins, Carrier Proteins, Nuclear Proteins, Plant Proteins, Repressor Proteins, Transcription Factors.
- chemical , genetics : Arabidopsis Proteins, Carrier Proteins, Nuclear Proteins, Plant Proteins, Repressor Proteins, Transcription Factors.
- Amino Acid Sequence, DNA-Binding Proteins, Evolution, Molecular, Models, Genetic, Molecular Sequence Data, Phylogeny, Protein Structure, Tertiary, Sequence Homology, Amino Acid.
Abstract
Arabidopsis VERNALIZATION2 (VRN2), EMBRYONIC FLOWER2 (EMF2), and FERTILIZATION-INDEPENDENT SEED2 (FIS2) are involved in vernalization-mediated flowering, vegetative development, and seed development, respectively. Together with Arabidopsis VEF-L36, they share a VEF domain that is conserved in plants and animals. To investigate the evolution of VEF-domain-containing genes (VEF genes), we analyzed sequences related to VEF genes across land plants. To date, 24 full-length sequences from 11 angiosperm families and 54 partial sequences from another nine families were identified. The majority of the full-length sequences identified share greatest sequence similarity with and possess the same major domain structure as Arabidopsis EMF2. EMF2-like sequences are not only widespread among angiosperms, but are also found in genomic sequences of gymnosperms, lycophyte, and moss. No FIS2- or VEF-L36-like sequences were recovered from plants other than Arabidopsis, including from rice and poplar for which whole genomes have been sequenced. Phylogenetic analysis of the full-length sequences showed a high degree of amino acid sequence conservation in EMF2 homologs of closely related taxa. VRN2 homologs are recovered as a clade nested within the larger EMF2 clade. FIS2 and VEF-L36 are recovered in the VRN2 clade. VRN2 clade may have evolved from an EMF2 duplication event that occurred in the rosids prior to the divergence of the eurosid I and eurosid II lineages. We propose that dynamic changes in genome evolution contribute to the generation of the family of VEF-domain-containing genes. Phylogenetic analysis of the VEF domain alone showed that VEF sequences continue to evolve following EMF2/VRN2 divergence in accordance with species relationship. Existence of EMF2-like sequences in animals and across land plants suggests that a prototype form of EMF2 was present prior to the divergence of the plant and animal lineages. A proposed sequence of events, based on domain organization and occurrence of intermediate sequences throughout angiosperms, could explain VRN2 evolution from an EMF2-like ancestral sequence, possibly following duplication of the ancestral EMF2. Available data further suggest that VEF-L36 and FIS2 were derived from a VRN2-like ancestral sequence. Thus, the presence of VEF-L36 and FIS2 in a genome may ultimately be dependent upon the presence of a VRN2-like sequence.
DOI: 10.1093/mp/ssp032
PubMed: 19825653
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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<term>Nuclear Proteins (genetics)</term>
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<term>Plant Proteins (classification)</term>
<term>Plant Proteins (genetics)</term>
<term>Protein Structure, Tertiary (MeSH)</term>
<term>Repressor Proteins (chemistry)</term>
<term>Repressor Proteins (classification)</term>
<term>Repressor Proteins (genetics)</term>
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<term>Transcription Factors (genetics)</term>
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<term>Facteurs de transcription (génétique)</term>
<term>Modèles génétiques (MeSH)</term>
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<term>Protéines de transport (composition chimique)</term>
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<term>Protéines nucléaires (classification)</term>
<term>Protéines nucléaires (composition chimique)</term>
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<front><div type="abstract" xml:lang="en">Arabidopsis VERNALIZATION2 (VRN2), EMBRYONIC FLOWER2 (EMF2), and FERTILIZATION-INDEPENDENT SEED2 (FIS2) are involved in vernalization-mediated flowering, vegetative development, and seed development, respectively. Together with Arabidopsis VEF-L36, they share a VEF domain that is conserved in plants and animals. To investigate the evolution of VEF-domain-containing genes (VEF genes), we analyzed sequences related to VEF genes across land plants. To date, 24 full-length sequences from 11 angiosperm families and 54 partial sequences from another nine families were identified. The majority of the full-length sequences identified share greatest sequence similarity with and possess the same major domain structure as Arabidopsis EMF2. EMF2-like sequences are not only widespread among angiosperms, but are also found in genomic sequences of gymnosperms, lycophyte, and moss. No FIS2- or VEF-L36-like sequences were recovered from plants other than Arabidopsis, including from rice and poplar for which whole genomes have been sequenced. Phylogenetic analysis of the full-length sequences showed a high degree of amino acid sequence conservation in EMF2 homologs of closely related taxa. VRN2 homologs are recovered as a clade nested within the larger EMF2 clade. FIS2 and VEF-L36 are recovered in the VRN2 clade. VRN2 clade may have evolved from an EMF2 duplication event that occurred in the rosids prior to the divergence of the eurosid I and eurosid II lineages. We propose that dynamic changes in genome evolution contribute to the generation of the family of VEF-domain-containing genes. Phylogenetic analysis of the VEF domain alone showed that VEF sequences continue to evolve following EMF2/VRN2 divergence in accordance with species relationship. Existence of EMF2-like sequences in animals and across land plants suggests that a prototype form of EMF2 was present prior to the divergence of the plant and animal lineages. A proposed sequence of events, based on domain organization and occurrence of intermediate sequences throughout angiosperms, could explain VRN2 evolution from an EMF2-like ancestral sequence, possibly following duplication of the ancestral EMF2. Available data further suggest that VEF-L36 and FIS2 were derived from a VRN2-like ancestral sequence. Thus, the presence of VEF-L36 and FIS2 in a genome may ultimately be dependent upon the presence of a VRN2-like sequence.</div>
</front>
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<Month>02</Month>
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<ArticleTitle>Molecular evolution of VEF-domain-containing PcG genes in plants.</ArticleTitle>
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<Abstract><AbstractText>Arabidopsis VERNALIZATION2 (VRN2), EMBRYONIC FLOWER2 (EMF2), and FERTILIZATION-INDEPENDENT SEED2 (FIS2) are involved in vernalization-mediated flowering, vegetative development, and seed development, respectively. Together with Arabidopsis VEF-L36, they share a VEF domain that is conserved in plants and animals. To investigate the evolution of VEF-domain-containing genes (VEF genes), we analyzed sequences related to VEF genes across land plants. To date, 24 full-length sequences from 11 angiosperm families and 54 partial sequences from another nine families were identified. The majority of the full-length sequences identified share greatest sequence similarity with and possess the same major domain structure as Arabidopsis EMF2. EMF2-like sequences are not only widespread among angiosperms, but are also found in genomic sequences of gymnosperms, lycophyte, and moss. No FIS2- or VEF-L36-like sequences were recovered from plants other than Arabidopsis, including from rice and poplar for which whole genomes have been sequenced. Phylogenetic analysis of the full-length sequences showed a high degree of amino acid sequence conservation in EMF2 homologs of closely related taxa. VRN2 homologs are recovered as a clade nested within the larger EMF2 clade. FIS2 and VEF-L36 are recovered in the VRN2 clade. VRN2 clade may have evolved from an EMF2 duplication event that occurred in the rosids prior to the divergence of the eurosid I and eurosid II lineages. We propose that dynamic changes in genome evolution contribute to the generation of the family of VEF-domain-containing genes. Phylogenetic analysis of the VEF domain alone showed that VEF sequences continue to evolve following EMF2/VRN2 divergence in accordance with species relationship. Existence of EMF2-like sequences in animals and across land plants suggests that a prototype form of EMF2 was present prior to the divergence of the plant and animal lineages. A proposed sequence of events, based on domain organization and occurrence of intermediate sequences throughout angiosperms, could explain VRN2 evolution from an EMF2-like ancestral sequence, possibly following duplication of the ancestral EMF2. Available data further suggest that VEF-L36 and FIS2 were derived from a VRN2-like ancestral sequence. Thus, the presence of VEF-L36 and FIS2 in a genome may ultimately be dependent upon the presence of a VRN2-like sequence.</AbstractText>
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<ForeName>Zhao-Yan</ForeName>
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<ForeName>Chelsea</ForeName>
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<ForeName>Z Renee</ForeName>
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<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
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<MeshHeading><DescriptorName UI="D004268" MajorTopicYN="N">DNA-Binding Proteins</DescriptorName>
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<MeshHeading><DescriptorName UI="D019143" MajorTopicYN="Y">Evolution, Molecular</DescriptorName>
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<MeshHeading><DescriptorName UI="D008957" MajorTopicYN="N">Models, Genetic</DescriptorName>
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<MeshHeading><DescriptorName UI="D008969" MajorTopicYN="N">Molecular Sequence Data</DescriptorName>
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<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
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<MeshHeading><DescriptorName UI="D010802" MajorTopicYN="N">Phylogeny</DescriptorName>
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<MeshHeading><DescriptorName UI="D010940" MajorTopicYN="N">Plant Proteins</DescriptorName>
<QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName>
<QualifierName UI="Q000145" MajorTopicYN="N">classification</QualifierName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
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<MeshHeading><DescriptorName UI="D017434" MajorTopicYN="N">Protein Structure, Tertiary</DescriptorName>
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<MeshHeading><DescriptorName UI="D012097" MajorTopicYN="N">Repressor Proteins</DescriptorName>
<QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName>
<QualifierName UI="Q000145" MajorTopicYN="N">classification</QualifierName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D017386" MajorTopicYN="N">Sequence Homology, Amino Acid</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D014157" MajorTopicYN="N">Transcription Factors</DescriptorName>
<QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName>
<QualifierName UI="Q000145" MajorTopicYN="N">classification</QualifierName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
</MeshHeadingList>
</MedlineCitation>
<PubmedData><History><PubMedPubDate PubStatus="entrez"><Year>2009</Year>
<Month>10</Month>
<Day>15</Day>
<Hour>6</Hour>
<Minute>0</Minute>
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<PubMedPubDate PubStatus="pubmed"><Year>2009</Year>
<Month>10</Month>
<Day>15</Day>
<Hour>6</Hour>
<Minute>0</Minute>
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<PubMedPubDate PubStatus="medline"><Year>2010</Year>
<Month>2</Month>
<Day>5</Day>
<Hour>6</Hour>
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<ArticleIdList><ArticleId IdType="pubmed">19825653</ArticleId>
<ArticleId IdType="pii">S1674-2052(14)60756-5</ArticleId>
<ArticleId IdType="doi">10.1093/mp/ssp032</ArticleId>
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<affiliations><list><country><li>États-Unis</li>
</country>
<region><li>Californie</li>
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<tree><country name="États-Unis"><region name="Californie"><name sortKey="Chen, Ling Jing" sort="Chen, Ling Jing" uniqKey="Chen L" first="Ling-Jing" last="Chen">Ling-Jing Chen</name>
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<name sortKey="Diao, Zhao Yan" sort="Diao, Zhao Yan" uniqKey="Diao Z" first="Zhao-Yan" last="Diao">Zhao-Yan Diao</name>
<name sortKey="Specht, Chelsea" sort="Specht, Chelsea" uniqKey="Specht C" first="Chelsea" last="Specht">Chelsea Specht</name>
<name sortKey="Sung, Z Renee" sort="Sung, Z Renee" uniqKey="Sung Z" first="Z Renee" last="Sung">Z Renee Sung</name>
</country>
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