Identification of TIFY Family Genes and Analysis of Their Expression Profiles in Response to Phytohormone Treatments and Melampsora larici-populina Infection in Poplar.
Identifieur interne : 000024 ( Main/Exploration ); précédent : 000023; suivant : 000025Identification of TIFY Family Genes and Analysis of Their Expression Profiles in Response to Phytohormone Treatments and Melampsora larici-populina Infection in Poplar.
Auteurs : Wenxiu Xia [République populaire de Chine] ; Hongyan Yu [République populaire de Chine] ; Pei Cao [République populaire de Chine] ; Jie Luo [République populaire de Chine] ; Nian Wang [République populaire de Chine]Source :
- Frontiers in plant science [ 1664-462X ] ; 2017.
Abstract
The TIFY domain contains approximately 36 conserved amino acids that form the core motif TIF[F/Y]XG, and they were reported to play important roles in plant growth, tissue development and defense regulation. Moreover, more and more evidence has shown that some members of the TIFY gene family perform their functions by modulating plant hormone signaling pathways. Poplar trees are found worldwide, and they comprise approximately 30 species. Benefit from the importance of poplar and its advanced platform, this tree is considered to be the model perennial plant. Here, we conducted a genome-wide identification of TIFY genes in poplar, and 24 TIFY genes were found. These 24 TIFY genes were assigned to different subfamilies according to the presence or absence of domains and motifs that they harbored. Careful analyses of their locations, structures, evolution and duplication patterns revealed an overview of this gene family in poplar. The expression profiles of these 24 TIFY genes were then analyzed in different tissues using publicly available expression data; their expression profiles following different JA/SA treatments and infection with leaf rust pathogen were also carefully examined by qRT-PCR assays. Based on their expression profiles, the functions of a number of TIFY genes could be predicted. By performing this study, we have provided valuable information for further functional characterisation of TIFY genes in poplar and candidate genes for the improvement of poplar disease resistance.
DOI: 10.3389/fpls.2017.00493
PubMed: 28424731
PubMed Central: PMC5380741
Affiliations:
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and Forestry Sciences, Huazhong Agricultural UniversityWuhan, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Horticulture and Forestry Sciences, Huazhong Agricultural UniversityWuhan</wicri:regionArea><wicri:noRegion>Huazhong Agricultural UniversityWuhan</wicri:noRegion></affiliation></author><author><name sortKey="Yu, Hongyan" sort="Yu, Hongyan" uniqKey="Yu H" first="Hongyan" last="Yu">Hongyan Yu</name><affiliation wicri:level="1"><nlm:affiliation>College of Horticulture and Forestry Sciences, Huazhong Agricultural UniversityWuhan, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Horticulture and Forestry Sciences, Huazhong Agricultural UniversityWuhan</wicri:regionArea><wicri:noRegion>Huazhong Agricultural UniversityWuhan</wicri:noRegion></affiliation></author><author><name sortKey="Cao, Pei" sort="Cao, Pei" uniqKey="Cao P" first="Pei" last="Cao">Pei Cao</name><affiliation wicri:level="1"><nlm:affiliation>College of Horticulture and Forestry Sciences, Huazhong Agricultural UniversityWuhan, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Horticulture and Forestry Sciences, Huazhong Agricultural UniversityWuhan</wicri:regionArea><wicri:noRegion>Huazhong Agricultural UniversityWuhan</wicri:noRegion></affiliation></author><author><name sortKey="Luo, Jie" sort="Luo, Jie" uniqKey="Luo J" first="Jie" last="Luo">Jie Luo</name><affiliation wicri:level="1"><nlm:affiliation>College of Horticulture and Forestry Sciences, Huazhong Agricultural UniversityWuhan, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Horticulture and Forestry Sciences, Huazhong Agricultural UniversityWuhan</wicri:regionArea><wicri:noRegion>Huazhong Agricultural UniversityWuhan</wicri:noRegion></affiliation></author><author><name sortKey="Wang, Nian" sort="Wang, Nian" uniqKey="Wang N" first="Nian" last="Wang">Nian Wang</name><affiliation wicri:level="1"><nlm:affiliation>College of Horticulture and Forestry Sciences, Huazhong Agricultural UniversityWuhan, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Horticulture and Forestry Sciences, Huazhong Agricultural UniversityWuhan</wicri:regionArea><wicri:noRegion>Huazhong Agricultural UniversityWuhan</wicri:noRegion></affiliation></author></analytic><series><title level="j">Frontiers in plant science</title><idno type="ISSN">1664-462X</idno><imprint><date when="2017" type="published">2017</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">The TIFY domain contains approximately 36 conserved amino acids that form the core motif TIF[F/Y]XG, and they were reported to play important roles in plant growth, tissue development and defense regulation. Moreover, more and more evidence has shown that some members of the TIFY gene family perform their functions by modulating plant hormone signaling pathways. Poplar trees are found worldwide, and they comprise approximately 30 species. Benefit from the importance of poplar and its advanced platform, this tree is considered to be the model perennial plant. Here, we conducted a genome-wide identification of TIFY genes in poplar, and 24 TIFY genes were found. These 24 TIFY genes were assigned to different subfamilies according to the presence or absence of domains and motifs that they harbored. Careful analyses of their locations, structures, evolution and duplication patterns revealed an overview of this gene family in poplar. The expression profiles of these 24 TIFY genes were then analyzed in different tissues using publicly available expression data; their expression profiles following different JA/SA treatments and infection with leaf rust pathogen were also carefully examined by qRT-PCR assays. Based on their expression profiles, the functions of a number of TIFY genes could be predicted. By performing this study, we have provided valuable information for further functional characterisation of TIFY genes in poplar and candidate genes for the improvement of poplar disease resistance.</div></front></TEI><pubmed><MedlineCitation Status="PubMed-not-MEDLINE" Owner="NLM"><PMID Version="1">28424731</PMID><DateRevised><Year>2020</Year><Month>10</Month><Day>01</Day></DateRevised><Article PubModel="Electronic-eCollection"><Journal><ISSN IssnType="Print">1664-462X</ISSN><JournalIssue CitedMedium="Print"><Volume>8</Volume><PubDate><Year>2017</Year></PubDate></JournalIssue><Title>Frontiers in plant science</Title><ISOAbbreviation>Front Plant Sci</ISOAbbreviation></Journal><ArticleTitle>Identification of TIFY Family Genes and Analysis of Their Expression Profiles in Response to Phytohormone Treatments and <i>Melampsora larici-populina</i> Infection in Poplar.</ArticleTitle><Pagination><MedlinePgn>493</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.3389/fpls.2017.00493</ELocationID><Abstract><AbstractText>The TIFY domain contains approximately 36 conserved amino acids that form the core motif TIF[F/Y]XG, and they were reported to play important roles in plant growth, tissue development and defense regulation. Moreover, more and more evidence has shown that some members of the TIFY gene family perform their functions by modulating plant hormone signaling pathways. Poplar trees are found worldwide, and they comprise approximately 30 species. Benefit from the importance of poplar and its advanced platform, this tree is considered to be the model perennial plant. Here, we conducted a genome-wide identification of TIFY genes in poplar, and 24 TIFY genes were found. These 24 TIFY genes were assigned to different subfamilies according to the presence or absence of domains and motifs that they harbored. Careful analyses of their locations, structures, evolution and duplication patterns revealed an overview of this gene family in poplar. The expression profiles of these 24 TIFY genes were then analyzed in different tissues using publicly available expression data; their expression profiles following different JA/SA treatments and infection with leaf rust pathogen were also carefully examined by qRT-PCR assays. Based on their expression profiles, the functions of a number of TIFY genes could be predicted. By performing this study, we have provided valuable information for further functional characterisation of TIFY genes in poplar and candidate genes for the improvement of poplar disease resistance.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Xia</LastName><ForeName>Wenxiu</ForeName><Initials>W</Initials><AffiliationInfo><Affiliation>College of Horticulture and Forestry Sciences, Huazhong Agricultural UniversityWuhan, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Yu</LastName><ForeName>Hongyan</ForeName><Initials>H</Initials><AffiliationInfo><Affiliation>College of Horticulture and Forestry Sciences, Huazhong Agricultural UniversityWuhan, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Cao</LastName><ForeName>Pei</ForeName><Initials>P</Initials><AffiliationInfo><Affiliation>College of Horticulture and Forestry Sciences, Huazhong Agricultural UniversityWuhan, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Luo</LastName><ForeName>Jie</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>College of Horticulture and Forestry Sciences, Huazhong Agricultural UniversityWuhan, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Wang</LastName><ForeName>Nian</ForeName><Initials>N</Initials><AffiliationInfo><Affiliation>College of Horticulture and Forestry Sciences, Huazhong Agricultural UniversityWuhan, China.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2017</Year><Month>04</Month><Day>05</Day></ArticleDate></Article><MedlineJournalInfo><Country>Switzerland</Country><MedlineTA>Front Plant Sci</MedlineTA><NlmUniqueID>101568200</NlmUniqueID><ISSNLinking>1664-462X</ISSNLinking></MedlineJournalInfo><KeywordList 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