Small RNA and mRNA Profiling of Arabidopsis in Response to Phytophthora Infection and PAMP Treatment.
Identifieur interne : 000921 ( Main/Exploration ); précédent : 000920; suivant : 000922Small RNA and mRNA Profiling of Arabidopsis in Response to Phytophthora Infection and PAMP Treatment.
Auteurs : Yingnan Hou [États-Unis] ; Wenbo Ma [États-Unis]Source :
- Methods in molecular biology (Clifton, N.J.) [ 1940-6029 ] ; 2017.
Descripteurs français
- KwdFr :
- ARN des plantes (génétique), ARN messager (génétique), Analyse de profil d'expression de gènes (méthodes), Analyse de séquence d'ARN (méthodes), Arabidopsis (génétique), Arabidopsis (immunologie), Arabidopsis (parasitologie), Immunité des plantes (MeSH), Maladies des plantes (génétique), Maladies des plantes (parasitologie), Molécules contenant des motifs associés aux pathogènes (immunologie), Petit ARN non traduit (génétique), Phytophthora (pathogénicité), Régulation de l'expression des gènes végétaux (MeSH), Réseaux de régulation génique (MeSH).
- MESH :
- génétique : ARN des plantes, ARN messager, Arabidopsis, Maladies des plantes, Petit ARN non traduit.
- immunologie : Arabidopsis, Molécules contenant des motifs associés aux pathogènes.
- méthodes : Analyse de profil d'expression de gènes, Analyse de séquence d'ARN.
- parasitologie : Arabidopsis, Maladies des plantes.
- pathogénicité : Phytophthora.
- Immunité des plantes, Régulation de l'expression des gènes végétaux, Réseaux de régulation génique.
English descriptors
- KwdEn :
- Arabidopsis (genetics), Arabidopsis (immunology), Arabidopsis (parasitology), Gene Expression Profiling (methods), Gene Expression Regulation, Plant (MeSH), Gene Regulatory Networks (MeSH), Pathogen-Associated Molecular Pattern Molecules (immunology), Phytophthora (pathogenicity), Plant Diseases (genetics), Plant Diseases (parasitology), Plant Immunity (MeSH), RNA, Messenger (genetics), RNA, Plant (genetics), RNA, Small Untranslated (genetics), Sequence Analysis, RNA (methods).
- MESH :
- chemical , genetics : RNA, Messenger, RNA, Plant, RNA, Small Untranslated.
- chemical , immunology : Pathogen-Associated Molecular Pattern Molecules.
- genetics : Arabidopsis, Plant Diseases.
- immunology : Arabidopsis.
- methods : Gene Expression Profiling, Sequence Analysis, RNA.
- parasitology : Arabidopsis, Plant Diseases.
- pathogenicity : Phytophthora.
- Gene Expression Regulation, Plant, Gene Regulatory Networks, Plant Immunity.
Abstract
Small non-coding RNAs (smRNAs) regulate gene expression at both transcriptional and post-transcriptional levels. Well known for their roles in development, smRNAs have emerged as important regulators of plant immunity. Upon pathogen perception, accumulation of specific smRNAs are found to be altered, presumably as a host defense response. Therefore, identification of differentially accumulated smRNAs and their target genes would provide important insight into the regulation mechanism of immune responses. Here, we describe the detailed experimental procedure using Illumina sequencing to analyze the expression profiles of smRNAs and mRNAs in Arabidopsis. We focus on a newly developed pathosystem using Phytophthora capsici as the pathogen and include the treatment of Arabidopsis leaves with pathogen-associated molecular patterns (PAMPs) of Phytophthora.
DOI: 10.1007/978-1-4939-6859-6_23
PubMed: 28220433
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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<front><div type="abstract" xml:lang="en">Small non-coding RNAs (smRNAs) regulate gene expression at both transcriptional and post-transcriptional levels. Well known for their roles in development, smRNAs have emerged as important regulators of plant immunity. Upon pathogen perception, accumulation of specific smRNAs are found to be altered, presumably as a host defense response. Therefore, identification of differentially accumulated smRNAs and their target genes would provide important insight into the regulation mechanism of immune responses. Here, we describe the detailed experimental procedure using Illumina sequencing to analyze the expression profiles of smRNAs and mRNAs in Arabidopsis. We focus on a newly developed pathosystem using Phytophthora capsici as the pathogen and include the treatment of Arabidopsis leaves with pathogen-associated molecular patterns (PAMPs) of Phytophthora.</div>
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