OrangerV1, PubMed, Checkpoint, bibRecord, 000375

Citrus sinensis annotation project (CAP): a comprehensive database for sweet orange genome.

Identifieur interne : 000375 ( PubMed/Checkpoint ); précédent : 000374; suivant : 000376

Citrus sinensis annotation project (CAP): a comprehensive database for sweet orange genome.

Auteurs : Jia Wang [République populaire de Chine] ; Dijun Chen [République populaire de Chine] ; Yang Lei [République populaire de Chine] ; Ji-Wei Chang [République populaire de Chine] ; Bao-Hai Hao [République populaire de Chine] ; Feng Xing [République populaire de Chine] ; Sen Li [République populaire de Chine] ; Qiang Xu [République populaire de Chine] ; Xiu-Xin Deng [République populaire de Chine] ; Ling-Ling Chen [République populaire de Chine]

Source :

PloS one [ 1932-6203 ] ; 2014.

RBID : pubmed:24489955

English descriptors

KwdEn :
- Citrus sinensis (genetics), Databases, Genetic, Genome, Plant, Internet, Metabolic Networks and Pathways, Molecular Sequence Annotation, Molecular Sequence Data, Protein Interaction Maps.
MESH :
- genetics : Citrus sinensis.
- Databases, Genetic, Genome, Plant, Internet, Metabolic Networks and Pathways, Molecular Sequence Annotation, Molecular Sequence Data, Protein Interaction Maps.

Abstract

Citrus is one of the most important and widely grown fruit crop with global production ranking firstly among all the fruit crops in the world. Sweet orange accounts for more than half of the Citrus production both in fresh fruit and processed juice. We have sequenced the draft genome of a double-haploid sweet orange (C. sinensis cv. Valencia), and constructed the Citrus sinensis annotation project (CAP) to store and visualize the sequenced genomic and transcriptome data. CAP provides GBrowse-based organization of sweet orange genomic data, which integrates ab initio gene prediction, EST, RNA-seq and RNA-paired end tag (RNA-PET) evidence-based gene annotation. Furthermore, we provide a user-friendly web interface to show the predicted protein-protein interactions (PPIs) and metabolic pathways in sweet orange. CAP provides comprehensive information beneficial to the researchers of sweet orange and other woody plants, which is freely available at http://citrus.hzau.edu.cn/.

DOI: 10.1371/journal.pone.0087723
PubMed: 24489955

Affiliations:

République populaire de Chine

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<front><div type="abstract" xml:lang="en">Citrus is one of the most important and widely grown fruit crop with global production ranking firstly among all the fruit crops in the world. Sweet orange accounts for more than half of the Citrus production both in fresh fruit and processed juice. We have sequenced the draft genome of a double-haploid sweet orange (C. sinensis cv. Valencia), and constructed the Citrus sinensis annotation project (CAP) to store and visualize the sequenced genomic and transcriptome data. CAP provides GBrowse-based organization of sweet orange genomic data, which integrates ab initio gene prediction, EST, RNA-seq and RNA-paired end tag (RNA-PET) evidence-based gene annotation. Furthermore, we provide a user-friendly web interface to show the predicted protein-protein interactions (PPIs) and metabolic pathways in sweet orange. CAP provides comprehensive information beneficial to the researchers of sweet orange and other woody plants, which is freely available at http://citrus.hzau.edu.cn/.</div>
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<CommentsCorrectionsList><CommentsCorrections RefType="Cites"><RefSource>Bioinformatics. 2001 Sep;17(9):847-8</RefSource>
<PMID Version="1">11590104</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Nucleic Acids Res. 2013 Jul;41(Web Server issue):W349-57</RefSource>
<PMID Version="1">23748958</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Nucleic Acids Res. 2004 Jan 1;32(Database issue):D258-61</RefSource>
<PMID Version="1">14681407</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Plant J. 2004 Mar;37(6):914-39</RefSource>
<PMID Version="1">14996223</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>J Mol Biol. 1997 Apr 25;268(1):78-94</RefSource>
<PMID Version="1">9149143</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Bioinformatics. 2004 Nov 1;20(16):2878-9</RefSource>
<PMID Version="1">15145805</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Nucleic Acids Res. 2008 Jan;36(Database issue):D577-81</RefSource>
<PMID Version="1">17982175</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Nucleic Acids Res. 2008 Jan;36(Database issue):D612-7</RefSource>
<PMID Version="1">17991679</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Nucleic Acids Res. 2009 Jan;37(Database issue):D555-9</RefSource>
<PMID Version="1">18948289</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Nucleic Acids Res. 2009 Jan;37(Database issue):D380-6</RefSource>
<PMID Version="1">19036790</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Methods Mol Biol. 2009;537:243-61</RefSource>
<PMID Version="1">19378148</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Nucleic Acids Res. 2010 Jan;38(Database issue):D453-6</RefSource>
<PMID Version="1">19793867</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Bioinformatics. 2010 Sep 15;26(18):2347-8</RefSource>
<PMID Version="1">20656902</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Nucleic Acids Res. 2011 Jul;39(Web Server issue):W29-37</RefSource>
<PMID Version="1">21593126</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Nucleic Acids Res. 2012 Jan;40(Database issue):D109-14</RefSource>
<PMID Version="1">22080510</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Nucleic Acids Res. 2012 Jan;40(Database issue):D290-301</RefSource>
<PMID Version="1">22127870</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Nucleic Acids Res. 2012 Jan;40(Database issue):D1202-10</RefSource>
<PMID Version="1">22140109</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Database (Oxford). 2012;2012:bas019</RefSource>
<PMID Version="1">22508994</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Nat Genet. 2013 Jan;45(1):59-66</RefSource>
<PMID Version="1">23179022</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Brief Bioinform. 2013 Mar;14(2):162-71</RefSource>
<PMID Version="1">23376193</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Nucleic Acids Res. 2003 Jan 1;31(1):365-70</RefSource>
<PMID Version="1">12520024</PMID>
</CommentsCorrections>
</CommentsCorrectionsList>
<MeshHeadingList><MeshHeading><DescriptorName UI="D032084" MajorTopicYN="N">Citrus sinensis</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D030541" MajorTopicYN="Y">Databases, Genetic</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D018745" MajorTopicYN="Y">Genome, Plant</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D020407" MajorTopicYN="N">Internet</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D053858" MajorTopicYN="N">Metabolic Networks and Pathways</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D058977" MajorTopicYN="Y">Molecular Sequence Annotation</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D008969" MajorTopicYN="N">Molecular Sequence Data</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D060066" MajorTopicYN="N">Protein Interaction Maps</DescriptorName>
</MeshHeading>
</MeshHeadingList>
<OtherID Source="NLM">PMC3905029</OtherID>
</MedlineCitation>
<PubmedData><History><PubMedPubDate PubStatus="received"><Year>2013</Year>
<Month>11</Month>
<Day>19</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="accepted"><Year>2013</Year>
<Month>12</Month>
<Day>29</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="entrez"><Year>2014</Year>
<Month>2</Month>
<Day>4</Day>
<Hour>6</Hour>
<Minute>0</Minute>
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<PubMedPubDate PubStatus="pubmed"><Year>2014</Year>
<Month>2</Month>
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<PubMedPubDate PubStatus="medline"><Year>2014</Year>
<Month>11</Month>
<Day>9</Day>
<Hour>6</Hour>
<Minute>0</Minute>
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<PublicationStatus>epublish</PublicationStatus>
<ArticleIdList><ArticleId IdType="pubmed">24489955</ArticleId>
<ArticleId IdType="doi">10.1371/journal.pone.0087723</ArticleId>
<ArticleId IdType="pii">PONE-D-13-48672</ArticleId>
<ArticleId IdType="pmc">PMC3905029</ArticleId>
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<affiliations><list><country><li>République populaire de Chine</li>
</country>
</list>
<tree><country name="République populaire de Chine"><noRegion><name sortKey="Wang, Jia" sort="Wang, Jia" uniqKey="Wang J" first="Jia" last="Wang">Jia Wang</name>
</noRegion>
<name sortKey="Chang, Ji Wei" sort="Chang, Ji Wei" uniqKey="Chang J" first="Ji-Wei" last="Chang">Ji-Wei Chang</name>
<name sortKey="Chen, Dijun" sort="Chen, Dijun" uniqKey="Chen D" first="Dijun" last="Chen">Dijun Chen</name>
<name sortKey="Chen, Ling Ling" sort="Chen, Ling Ling" uniqKey="Chen L" first="Ling-Ling" last="Chen">Ling-Ling Chen</name>
<name sortKey="Deng, Xiu Xin" sort="Deng, Xiu Xin" uniqKey="Deng X" first="Xiu-Xin" last="Deng">Xiu-Xin Deng</name>
<name sortKey="Hao, Bao Hai" sort="Hao, Bao Hai" uniqKey="Hao B" first="Bao-Hai" last="Hao">Bao-Hai Hao</name>
<name sortKey="Lei, Yang" sort="Lei, Yang" uniqKey="Lei Y" first="Yang" last="Lei">Yang Lei</name>
<name sortKey="Li, Sen" sort="Li, Sen" uniqKey="Li S" first="Sen" last="Li">Sen Li</name>
<name sortKey="Xing, Feng" sort="Xing, Feng" uniqKey="Xing F" first="Feng" last="Xing">Feng Xing</name>
<name sortKey="Xu, Qiang" sort="Xu, Qiang" uniqKey="Xu Q" first="Qiang" last="Xu">Qiang Xu</name>
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Citrus sinensis annotation project (CAP): a comprehensive database for sweet orange genome.

Citrus sinensis annotation project (CAP): a comprehensive database for sweet orange genome.

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