OrangerV1, PubMed, Corpus, bibRecord, 000382

Citrus sinensis annotation project (CAP): a comprehensive database for sweet orange genome.

Identifieur interne : 000382 ( PubMed/Corpus ); précédent : 000381; suivant : 000383

Citrus sinensis annotation project (CAP): a comprehensive database for sweet orange genome.

Auteurs : Jia Wang ; Dijun Chen ; Yang Lei ; Ji-Wei Chang ; Bao-Hai Hao ; Feng Xing ; Sen Li ; Qiang Xu ; Xiu-Xin Deng ; Ling-Ling Chen

Source :

PloS one [ 1932-6203 ] ; 2014.

RBID : pubmed:24489955

English descriptors

KwdEn :
- Citrus sinensis (genetics), Databases, Genetic, Genome, Plant, Internet, Metabolic Networks and Pathways, Molecular Sequence Annotation, Molecular Sequence Data, Protein Interaction Maps.
MESH :
- genetics : Citrus sinensis.
- Databases, Genetic, Genome, Plant, Internet, Metabolic Networks and Pathways, Molecular Sequence Annotation, Molecular Sequence Data, Protein Interaction Maps.

Abstract

Citrus is one of the most important and widely grown fruit crop with global production ranking firstly among all the fruit crops in the world. Sweet orange accounts for more than half of the Citrus production both in fresh fruit and processed juice. We have sequenced the draft genome of a double-haploid sweet orange (C. sinensis cv. Valencia), and constructed the Citrus sinensis annotation project (CAP) to store and visualize the sequenced genomic and transcriptome data. CAP provides GBrowse-based organization of sweet orange genomic data, which integrates ab initio gene prediction, EST, RNA-seq and RNA-paired end tag (RNA-PET) evidence-based gene annotation. Furthermore, we provide a user-friendly web interface to show the predicted protein-protein interactions (PPIs) and metabolic pathways in sweet orange. CAP provides comprehensive information beneficial to the researchers of sweet orange and other woody plants, which is freely available at http://citrus.hzau.edu.cn/.

DOI: 10.1371/journal.pone.0087723
PubMed: 24489955

Links to Exploration step

pubmed:24489955

Le document en format XML

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<front><div type="abstract" xml:lang="en">Citrus is one of the most important and widely grown fruit crop with global production ranking firstly among all the fruit crops in the world. Sweet orange accounts for more than half of the Citrus production both in fresh fruit and processed juice. We have sequenced the draft genome of a double-haploid sweet orange (C. sinensis cv. Valencia), and constructed the Citrus sinensis annotation project (CAP) to store and visualize the sequenced genomic and transcriptome data. CAP provides GBrowse-based organization of sweet orange genomic data, which integrates ab initio gene prediction, EST, RNA-seq and RNA-paired end tag (RNA-PET) evidence-based gene annotation. Furthermore, we provide a user-friendly web interface to show the predicted protein-protein interactions (PPIs) and metabolic pathways in sweet orange. CAP provides comprehensive information beneficial to the researchers of sweet orange and other woody plants, which is freely available at http://citrus.hzau.edu.cn/.</div>
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Citrus sinensis annotation project (CAP): a comprehensive database for sweet orange genome.

Citrus sinensis annotation project (CAP): a comprehensive database for sweet orange genome.

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English descriptors

Abstract

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