Comparative Transcriptome Analyses between a Spontaneous Late-Ripening Sweet Orange Mutant and Its Wild Type Suggest the Functions of ABA, Sucrose and JA during Citrus Fruit Ripening
Identifieur interne : 000229 ( Pmc/Curation ); précédent : 000228; suivant : 000230Comparative Transcriptome Analyses between a Spontaneous Late-Ripening Sweet Orange Mutant and Its Wild Type Suggest the Functions of ABA, Sucrose and JA during Citrus Fruit Ripening
Auteurs : Ya-Jian Zhang [République populaire de Chine] ; Xing-Jian Wang [République populaire de Chine] ; Ju-Xun Wu [République populaire de Chine] ; Shan-Yan Chen [République populaire de Chine] ; Hong Chen [République populaire de Chine] ; Li-Jun Chai [République populaire de Chine] ; Hua-Lin Yi [République populaire de Chine]Source :
- PLoS ONE [ 1932-6203 ] ; 2014.
Abstract
A spontaneous late-ripening mutant of ‘Jincheng’ (
Url:
DOI: 10.1371/journal.pone.0116056
PubMed: 25551568
PubMed Central: 4281182
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<author><name sortKey="Chen, Hong" sort="Chen, Hong" uniqKey="Chen H" first="Hong" last="Chen">Hong Chen</name>
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<author><name sortKey="Chai, Li Jun" sort="Chai, Li Jun" uniqKey="Chai L" first="Li-Jun" last="Chai">Li-Jun Chai</name>
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<author><name sortKey="Yi, Hua Lin" sort="Yi, Hua Lin" uniqKey="Yi H" first="Hua-Lin" last="Yi">Hua-Lin Yi</name>
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<front><div type="abstract" xml:lang="en"><p>A spontaneous late-ripening mutant of ‘Jincheng’ (<italic>C. sinensis</italic>
L. Osbeck) sweet orange exhibited a delay of fruit pigmentation and harvesting. In this work, we studied the processes of orange fruit ripening through the comparative analysis between the Jincheng mutant and its wild type. This study revealed that the fruit quality began to differ on 166<sup>th</sup>
days after anthesis. At this stage, fruits were subjected to transcriptome analysis by RNA sequencing. 13,412 differentially expressed unigenes (DEGs) were found. Of these unigenes, 75.8% were down-regulated in the wild type, suggesting that the transcription level of wild type was lower than that of the mutant during this stage. These DEGs were mainly clustered into five pathways: metabolic pathways, plant-pathogen interaction, spliceosome, biosynthesis of plant hormones and biosynthesis of phenylpropanoids. Therefore, the expression profiles of the genes that are involved in abscisic acid, sucrose, and jasmonic acid metabolism and signal transduction pathways were analyzed during the six fruit ripening stages. The results revealed the regulation mechanism of sweet orange fruit ripening metabolism in the following four aspects: First, the more mature orange fruits were, the lower the transcription levels were. Second, the expression level of <italic>PME</italic>
boosted with the maturity of the citrus fruit. Therefore, the expression level of <italic>PME</italic>
might represent the degree of the orange fruit ripeness. Third, the interaction of PP2C, PYR/PYL, and SnRK2 was peculiar to the orange fruit ripening process. Fourth, abscisic acid, sucrose, and jasmonic acid all took part in orange fruit ripening process and might interact with each other. These findings provide an insight into the intricate process of sweet orange fruit ripening.</p>
</div>
</front>
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<pmc article-type="research-article"><pmc-dir>properties open_access</pmc-dir>
<front><journal-meta><journal-id journal-id-type="nlm-ta">PLoS One</journal-id>
<journal-id journal-id-type="iso-abbrev">PLoS ONE</journal-id>
<journal-id journal-id-type="publisher-id">plos</journal-id>
<journal-id journal-id-type="pmc">plosone</journal-id>
<journal-title-group><journal-title>PLoS ONE</journal-title>
</journal-title-group>
<issn pub-type="epub">1932-6203</issn>
<publisher><publisher-name>Public Library of Science</publisher-name>
<publisher-loc>San Francisco, USA</publisher-loc>
</publisher>
</journal-meta>
<article-meta><article-id pub-id-type="pmid">25551568</article-id>
<article-id pub-id-type="pmc">4281182</article-id>
<article-id pub-id-type="publisher-id">PONE-D-14-35480</article-id>
<article-id pub-id-type="doi">10.1371/journal.pone.0116056</article-id>
<article-categories><subj-group subj-group-type="heading"><subject>Research Article</subject>
</subj-group>
<subj-group subj-group-type="Discipline-v2"><subject>Biology and Life Sciences</subject>
<subj-group><subject>Agriculture</subject>
<subj-group><subject>Agricultural Biotechnology</subject>
</subj-group>
</subj-group>
<subj-group><subject>Developmental Biology</subject>
<subj-group><subject>Plant Growth and Development</subject>
</subj-group>
</subj-group>
<subj-group><subject>Genetics</subject>
<subj-group><subject>Gene Expression</subject>
<subject>Genomics</subject>
<subject>Plant Genetics</subject>
</subj-group>
</subj-group>
<subj-group><subject>Plant Science</subject>
<subj-group><subject>Plant Physiology</subject>
</subj-group>
</subj-group>
</subj-group>
</article-categories>
<title-group><article-title>Comparative Transcriptome Analyses between a Spontaneous Late-Ripening Sweet Orange Mutant and Its Wild Type Suggest the Functions of ABA, Sucrose and JA during Citrus Fruit Ripening</article-title>
<alt-title alt-title-type="running-head">ABA, Sucrose and JA Function in Citrus Fruit Ripening</alt-title>
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<contrib-group><contrib contrib-type="author"><name><surname>Zhang</surname>
<given-names>Ya-Jian</given-names>
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<xref ref-type="aff" rid="aff1"><sup>1</sup>
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<xref ref-type="aff" rid="aff2"><sup>2</sup>
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<contrib contrib-type="author"><name><surname>Wang</surname>
<given-names>Xing-Jian</given-names>
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<xref ref-type="aff" rid="aff1"><sup>1</sup>
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<xref ref-type="aff" rid="aff2"><sup>2</sup>
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<given-names>Ju-Xun</given-names>
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<xref ref-type="aff" rid="aff1"><sup>1</sup>
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<xref ref-type="aff" rid="aff2"><sup>2</sup>
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<contrib contrib-type="author"><name><surname>Chen</surname>
<given-names>Shan-Yan</given-names>
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<xref ref-type="aff" rid="aff1"><sup>1</sup>
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<xref ref-type="aff" rid="aff2"><sup>2</sup>
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<xref ref-type="aff" rid="aff3"><sup>3</sup>
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<given-names>Hong</given-names>
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<xref ref-type="aff" rid="aff4"><sup>4</sup>
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<contrib contrib-type="author"><name><surname>Chai</surname>
<given-names>Li-Jun</given-names>
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<xref ref-type="aff" rid="aff1"><sup>1</sup>
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<xref ref-type="aff" rid="aff2"><sup>2</sup>
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<xref ref-type="corresp" rid="cor1"><sup>*</sup>
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<contrib contrib-type="author"><name><surname>Yi</surname>
<given-names>Hua-Lin</given-names>
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<xref ref-type="aff" rid="aff1"><sup>1</sup>
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<xref ref-type="aff" rid="aff2"><sup>2</sup>
</xref>
<xref ref-type="corresp" rid="cor1"><sup>*</sup>
</xref>
</contrib>
</contrib-group>
<aff id="aff1"><label>1</label>
<addr-line>Key Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan, 430070, China</addr-line>
</aff>
<aff id="aff2"><label>2</label>
<addr-line>National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070, China</addr-line>
</aff>
<aff id="aff3"><label>3</label>
<addr-line>Kunming Academy of Agricultural Sciences, Kunming, 650000, China</addr-line>
</aff>
<aff id="aff4"><label>4</label>
<addr-line>Engineering Technology College, Huazhong Agricultural University, Wuhan, 430070, China</addr-line>
</aff>
<contrib-group><contrib contrib-type="editor"><name><surname>Fang</surname>
<given-names>David D.</given-names>
</name>
<role>Editor</role>
<xref ref-type="aff" rid="edit1"></xref>
</contrib>
</contrib-group>
<aff id="edit1"><addr-line>USDA-ARS-SRRC, United States of America</addr-line>
</aff>
<author-notes><corresp id="cor1">* E-mail: <email>chailijun@mail.hzau.edu.cn</email>
(LJC); <email>yihualin@mail.hzau.edu.cn</email>
(HLY)</corresp>
<fn fn-type="conflict"><p><bold>Competing Interests: </bold>
The authors have declared that no competing interests exist.</p>
</fn>
<fn fn-type="con"><p>Conceived and designed the experiments: HLY. Performed the experiments: YJZ XJW SYC JXW. Analyzed the data: YJZ. Contributed reagents/materials/analysis tools: HLY. Wrote the paper: YJZ LJC HC HLY.</p>
</fn>
</author-notes>
<pub-date pub-type="collection"><year>2014</year>
</pub-date>
<pub-date pub-type="epub"><day>31</day>
<month>12</month>
<year>2014</year>
</pub-date>
<volume>9</volume>
<issue>12</issue>
<elocation-id>e116056</elocation-id>
<history><date date-type="received"><day>8</day>
<month>8</month>
<year>2014</year>
</date>
<date date-type="accepted"><day>1</day>
<month>12</month>
<year>2014</year>
</date>
</history>
<permissions><copyright-year>2014</copyright-year>
<copyright-holder>Zhang et al</copyright-holder>
<license><license-p>This is an open-access article distributed under the terms of the <ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by/4.0/">Creative Commons Attribution License</ext-link>
, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.</license-p>
</license>
</permissions>
<abstract><p>A spontaneous late-ripening mutant of ‘Jincheng’ (<italic>C. sinensis</italic>
L. Osbeck) sweet orange exhibited a delay of fruit pigmentation and harvesting. In this work, we studied the processes of orange fruit ripening through the comparative analysis between the Jincheng mutant and its wild type. This study revealed that the fruit quality began to differ on 166<sup>th</sup>
days after anthesis. At this stage, fruits were subjected to transcriptome analysis by RNA sequencing. 13,412 differentially expressed unigenes (DEGs) were found. Of these unigenes, 75.8% were down-regulated in the wild type, suggesting that the transcription level of wild type was lower than that of the mutant during this stage. These DEGs were mainly clustered into five pathways: metabolic pathways, plant-pathogen interaction, spliceosome, biosynthesis of plant hormones and biosynthesis of phenylpropanoids. Therefore, the expression profiles of the genes that are involved in abscisic acid, sucrose, and jasmonic acid metabolism and signal transduction pathways were analyzed during the six fruit ripening stages. The results revealed the regulation mechanism of sweet orange fruit ripening metabolism in the following four aspects: First, the more mature orange fruits were, the lower the transcription levels were. Second, the expression level of <italic>PME</italic>
boosted with the maturity of the citrus fruit. Therefore, the expression level of <italic>PME</italic>
might represent the degree of the orange fruit ripeness. Third, the interaction of PP2C, PYR/PYL, and SnRK2 was peculiar to the orange fruit ripening process. Fourth, abscisic acid, sucrose, and jasmonic acid all took part in orange fruit ripening process and might interact with each other. These findings provide an insight into the intricate process of sweet orange fruit ripening.</p>
</abstract>
<funding-group><funding-statement>This research was funded by the State Agriculture Research System (SARS) of China, the National Natural Science Foundation of China (nos. 31301706, 31460507), the Fundamental Research Funds for the Central Universities (2013QC037), and the Special Project on the Integration of Industry, Education and Research of Guangdong Province (2012B091100169). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.</funding-statement>
</funding-group>
<counts><page-count count="27"></page-count>
</counts>
<custom-meta-group><custom-meta id="data-availability"><meta-name>Data Availability</meta-name>
<meta-value>The authors confirm that all data underlying the findings are fully available without restriction. All relevant data are within the paper and its Supporting Information files.</meta-value>
</custom-meta>
</custom-meta-group>
</article-meta>
<notes><title>Data Availability</title>
<p>The authors confirm that all data underlying the findings are fully available without restriction. All relevant data are within the paper and its Supporting Information files.</p>
</notes>
</front>
</pmc>
</record>
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