Identification of early salt stress responsive proteins in seedling roots of upland cotton (Gossypium hirsutum L.) employing iTRAQ-based proteomic technique
Identifieur interne : 001D37 ( Ncbi/Merge ); précédent : 001D36; suivant : 001D38Identification of early salt stress responsive proteins in seedling roots of upland cotton (Gossypium hirsutum L.) employing iTRAQ-based proteomic technique
Auteurs : Wu Li [République populaire de Chine] ; Fu'An Zhao [République populaire de Chine] ; Weiping Fang [République populaire de Chine] ; Deyi Xie [République populaire de Chine] ; Jianan Hou [République populaire de Chine] ; Xiaojie Yang [République populaire de Chine] ; Yuanming Zhao [République populaire de Chine] ; Zhongjie Tang [République populaire de Chine] ; Lihong Nie [République populaire de Chine] ; Shuping Lv [République populaire de Chine]Source :
- Frontiers in Plant Science [ 1664-462X ] ; 2015.
Abstract
Soil salinity is a major abiotic stress that limits plant growth and agricultural productivity. Upland cotton (
Url:
DOI: 10.3389/fpls.2015.00732
PubMed: 26442045
PubMed Central: 4566050
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<sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Identification of early salt stress responsive proteins in seedling roots of upland cotton (<italic>Gossypium hirsutum</italic>
L.) employing iTRAQ-based proteomic technique</title>
<author><name sortKey="Li, Wu" sort="Li, Wu" uniqKey="Li W" first="Wu" last="Li">Wu Li</name>
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<country>Kaifeng, China</country>
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<affiliation wicri:level="1"><nlm:aff id="aff2"><institution>Economic Crop Research Institute, Henan Academy of Agricultural Sciences</institution>
<country>Zhengzhou, China</country>
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<country xml:lang="fr">République populaire de Chine</country>
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<author><name sortKey="Zhao, Fu An" sort="Zhao, Fu An" uniqKey="Zhao F" first="Fu'An" last="Zhao">Fu'An Zhao</name>
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<author><name sortKey="Fang, Weiping" sort="Fang, Weiping" uniqKey="Fang W" first="Weiping" last="Fang">Weiping Fang</name>
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<author><name sortKey="Xie, Deyi" sort="Xie, Deyi" uniqKey="Xie D" first="Deyi" last="Xie">Deyi Xie</name>
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<country>Zhengzhou, China</country>
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<author><name sortKey="Hou, Jianan" sort="Hou, Jianan" uniqKey="Hou J" first="Jianan" last="Hou">Jianan Hou</name>
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<country xml:lang="fr">République populaire de Chine</country>
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<author><name sortKey="Yang, Xiaojie" sort="Yang, Xiaojie" uniqKey="Yang X" first="Xiaojie" last="Yang">Xiaojie Yang</name>
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<author><name sortKey="Zhao, Yuanming" sort="Zhao, Yuanming" uniqKey="Zhao Y" first="Yuanming" last="Zhao">Yuanming Zhao</name>
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<country>Zhengzhou, China</country>
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<country xml:lang="fr">République populaire de Chine</country>
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<author><name sortKey="Tang, Zhongjie" sort="Tang, Zhongjie" uniqKey="Tang Z" first="Zhongjie" last="Tang">Zhongjie Tang</name>
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<country>Zhengzhou, China</country>
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<author><name sortKey="Nie, Lihong" sort="Nie, Lihong" uniqKey="Nie L" first="Lihong" last="Nie">Lihong Nie</name>
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<author><name sortKey="Lv, Shuping" sort="Lv, Shuping" uniqKey="Lv S" first="Shuping" last="Lv">Shuping Lv</name>
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<series><title level="j">Frontiers in Plant Science</title>
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<front><div type="abstract" xml:lang="en"><p>Soil salinity is a major abiotic stress that limits plant growth and agricultural productivity. Upland cotton (<italic>Gossypium hirsutum</italic>
L.) is highly tolerant to salinity; however, large-scale proteomic data of cotton in response to salt stress are still scant. Here, an isobaric tag for relative and absolute quantitation (iTRAQ)-based proteomic technique was employed to identify the early differentially expressed proteins (DEPs) from salt-treated cotton roots. One hundred and twenty-eight DEPs were identified, 76 of which displayed increased abundance and 52 decreased under salt stress conditions. The majority of the proteins have functions related to carbohydrate and energy metabolism, transcription, protein metabolism, cell wall and cytoskeleton metabolism, membrane and transport, signal transduction, in addition to stress and defense. It is worth emphasizing that some novel salt-responsive proteins were identified, which are involved in cell cytoskeleton metabolism (actin-related protein2, ARP2, and fasciclin-like arabinogalactan proteins, FLAs), membrane transport (tonoplast intrinsic proteins, TIPs, and plasma membrane intrinsic proteins, PIPs), signal transduction (leucine-rich repeat receptor-like kinase encoding genes, LRR-RLKs) and stress responses (thaumatin-like protein, TLP, universal stress protein, USP, dirigent-like protein, DIR, desiccation-related protein PCC13-62). High positive correlation between the abundance of some altered proteins (superoxide dismutase, SOD, peroxidase, POD, glutathione S-transferase, GST, monodehydroascorbate reductase, MDAR, and malate dehydrogenase, MDH) and their enzyme activity was evaluated. The results demonstrate that the iTRAQ-based proteomic technique is reliable for identifying and quantifying a large number of cotton root proteins. qRT-PCR was used to study the gene expression levels of the five above-mentioned proteins; four patterns are consistent with those of induced protein. These results showed that the proteome of cotton roots under NaCl stress is complex. The comparative protein profiles of roots under salinity vs control improves the understanding of the molecular mechanisms involved in the tolerance of plants to salt stress. This work provides a good basis for further functional elucidation of these DEPs using genetic and/or other approaches, and, consequently, candidate genes for genetic engineering to improve crop salt tolerance.</p>
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<pmc article-type="research-article"><pmc-dir>properties open_access</pmc-dir>
<front><journal-meta><journal-id journal-id-type="nlm-ta">Front Plant Sci</journal-id>
<journal-id journal-id-type="iso-abbrev">Front Plant Sci</journal-id>
<journal-id journal-id-type="publisher-id">Front. Plant Sci.</journal-id>
<journal-title-group><journal-title>Frontiers in Plant Science</journal-title>
</journal-title-group>
<issn pub-type="epub">1664-462X</issn>
<publisher><publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta><article-id pub-id-type="pmid">26442045</article-id>
<article-id pub-id-type="pmc">4566050</article-id>
<article-id pub-id-type="doi">10.3389/fpls.2015.00732</article-id>
<article-categories><subj-group subj-group-type="heading"><subject>Plant Science</subject>
<subj-group><subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group><article-title>Identification of early salt stress responsive proteins in seedling roots of upland cotton (<italic>Gossypium hirsutum</italic>
L.) employing iTRAQ-based proteomic technique</article-title>
</title-group>
<contrib-group><contrib contrib-type="author"><name><surname>Li</surname>
<given-names>Wu</given-names>
</name>
<xref ref-type="aff" rid="aff1"><sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2"><sup>2</sup>
</xref>
<xref ref-type="author-notes" rid="fn002"><sup>†</sup>
</xref>
<uri xlink:type="simple" xlink:href="http://loop.frontiersin.org/people/269525/overview"></uri>
</contrib>
<contrib contrib-type="author"><name><surname>Zhao</surname>
<given-names>Fu'an</given-names>
</name>
<xref ref-type="aff" rid="aff2"><sup>2</sup>
</xref>
<xref ref-type="author-notes" rid="fn002"><sup>†</sup>
</xref>
<uri xlink:type="simple" xlink:href="http://loop.frontiersin.org/people/269531/overview"></uri>
</contrib>
<contrib contrib-type="author"><name><surname>Fang</surname>
<given-names>Weiping</given-names>
</name>
<xref ref-type="aff" rid="aff2"><sup>2</sup>
</xref>
<xref ref-type="author-notes" rid="fn001"><sup>*</sup>
</xref>
<uri xlink:type="simple" xlink:href="http://loop.frontiersin.org/people/237120/overview"></uri>
</contrib>
<contrib contrib-type="author"><name><surname>Xie</surname>
<given-names>Deyi</given-names>
</name>
<xref ref-type="aff" rid="aff2"><sup>2</sup>
</xref>
<uri xlink:type="simple" xlink:href="http://loop.frontiersin.org/people/269534/overview"></uri>
</contrib>
<contrib contrib-type="author"><name><surname>Hou</surname>
<given-names>Jianan</given-names>
</name>
<xref ref-type="aff" rid="aff2"><sup>2</sup>
</xref>
<uri xlink:type="simple" xlink:href="http://loop.frontiersin.org/people/269541/overview"></uri>
</contrib>
<contrib contrib-type="author"><name><surname>Yang</surname>
<given-names>Xiaojie</given-names>
</name>
<xref ref-type="aff" rid="aff2"><sup>2</sup>
</xref>
<uri xlink:type="simple" xlink:href="http://loop.frontiersin.org/people/269543/overview"></uri>
</contrib>
<contrib contrib-type="author"><name><surname>Zhao</surname>
<given-names>Yuanming</given-names>
</name>
<xref ref-type="aff" rid="aff2"><sup>2</sup>
</xref>
<uri xlink:type="simple" xlink:href="http://loop.frontiersin.org/people/269544/overview"></uri>
</contrib>
<contrib contrib-type="author"><name><surname>Tang</surname>
<given-names>Zhongjie</given-names>
</name>
<xref ref-type="aff" rid="aff2"><sup>2</sup>
</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Nie</surname>
<given-names>Lihong</given-names>
</name>
<xref ref-type="aff" rid="aff2"><sup>2</sup>
</xref>
<uri xlink:type="simple" xlink:href="http://loop.frontiersin.org/people/269545/overview"></uri>
</contrib>
<contrib contrib-type="author"><name><surname>Lv</surname>
<given-names>Shuping</given-names>
</name>
<xref ref-type="aff" rid="aff2"><sup>2</sup>
</xref>
<uri xlink:type="simple" xlink:href="http://loop.frontiersin.org/people/269547/overview"></uri>
</contrib>
</contrib-group>
<aff id="aff1"><sup>1</sup>
<institution>College of Life Sciences, Henan University</institution>
<country>Kaifeng, China</country>
</aff>
<aff id="aff2"><sup>2</sup>
<institution>Economic Crop Research Institute, Henan Academy of Agricultural Sciences</institution>
<country>Zhengzhou, China</country>
</aff>
<author-notes><fn fn-type="edited-by"><p>Edited by: Hans-Peter Mock, Institute of Plant Genetics and Crop Plant Reserach, Germany</p>
</fn>
<fn fn-type="edited-by"><p>Reviewed by: Keyvan Aghaei, The University of Zanjan, Iran; Giridara Kumar Surabhi, Regional Plant Resource Centre, India</p>
</fn>
<corresp id="fn001">*Correspondence: Weiping Fang, Economic Crop Research Institute, Henan Academy of Agricultural Sciences, NO. 115, Huayuan Road, Zhengzhou 450002, China <email xlink:type="simple">fangweiping0425@126.com</email>
</corresp>
<fn fn-type="present-address" id="fn002"><p>†These authors have contributed equally to this work.</p>
</fn>
<fn fn-type="other" id="fn003"><p>This article was submitted to Plant Proteomics, a section of the journal Frontiers in Plant Science</p>
</fn>
</author-notes>
<pub-date pub-type="epub"><day>11</day>
<month>9</month>
<year>2015</year>
</pub-date>
<pub-date pub-type="collection"><year>2015</year>
</pub-date>
<volume>6</volume>
<elocation-id>732</elocation-id>
<history><date date-type="received"><day>12</day>
<month>5</month>
<year>2015</year>
</date>
<date date-type="accepted"><day>28</day>
<month>8</month>
<year>2015</year>
</date>
</history>
<permissions><copyright-statement>Copyright © 2015 Li, Zhao, Fang, Xie, Hou, Yang, Zhao, Tang, Nie and Lv.</copyright-statement>
<copyright-year>2015</copyright-year>
<copyright-holder>Li, Zhao, Fang, Xie, Hou, Yang, Zhao, Tang, Nie and Lv</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/"><license-p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</license-p>
</license>
</permissions>
<abstract><p>Soil salinity is a major abiotic stress that limits plant growth and agricultural productivity. Upland cotton (<italic>Gossypium hirsutum</italic>
L.) is highly tolerant to salinity; however, large-scale proteomic data of cotton in response to salt stress are still scant. Here, an isobaric tag for relative and absolute quantitation (iTRAQ)-based proteomic technique was employed to identify the early differentially expressed proteins (DEPs) from salt-treated cotton roots. One hundred and twenty-eight DEPs were identified, 76 of which displayed increased abundance and 52 decreased under salt stress conditions. The majority of the proteins have functions related to carbohydrate and energy metabolism, transcription, protein metabolism, cell wall and cytoskeleton metabolism, membrane and transport, signal transduction, in addition to stress and defense. It is worth emphasizing that some novel salt-responsive proteins were identified, which are involved in cell cytoskeleton metabolism (actin-related protein2, ARP2, and fasciclin-like arabinogalactan proteins, FLAs), membrane transport (tonoplast intrinsic proteins, TIPs, and plasma membrane intrinsic proteins, PIPs), signal transduction (leucine-rich repeat receptor-like kinase encoding genes, LRR-RLKs) and stress responses (thaumatin-like protein, TLP, universal stress protein, USP, dirigent-like protein, DIR, desiccation-related protein PCC13-62). High positive correlation between the abundance of some altered proteins (superoxide dismutase, SOD, peroxidase, POD, glutathione S-transferase, GST, monodehydroascorbate reductase, MDAR, and malate dehydrogenase, MDH) and their enzyme activity was evaluated. The results demonstrate that the iTRAQ-based proteomic technique is reliable for identifying and quantifying a large number of cotton root proteins. qRT-PCR was used to study the gene expression levels of the five above-mentioned proteins; four patterns are consistent with those of induced protein. These results showed that the proteome of cotton roots under NaCl stress is complex. The comparative protein profiles of roots under salinity vs control improves the understanding of the molecular mechanisms involved in the tolerance of plants to salt stress. This work provides a good basis for further functional elucidation of these DEPs using genetic and/or other approaches, and, consequently, candidate genes for genetic engineering to improve crop salt tolerance.</p>
</abstract>
<kwd-group><kwd><italic>Gossypium hirsutum</italic>
</kwd>
<kwd>salt stress</kwd>
<kwd>iTRAQ</kwd>
<kwd>root</kwd>
<kwd>proteomics</kwd>
</kwd-group>
<counts><fig-count count="5"></fig-count>
<table-count count="1"></table-count>
<equation-count count="0"></equation-count>
<ref-count count="78"></ref-count>
<page-count count="14"></page-count>
<word-count count="9794"></word-count>
</counts>
</article-meta>
</front>
</pmc>
<affiliations><list><country><li>République populaire de Chine</li>
</country>
</list>
<tree><country name="République populaire de Chine"><noRegion><name sortKey="Li, Wu" sort="Li, Wu" uniqKey="Li W" first="Wu" last="Li">Wu Li</name>
</noRegion>
<name sortKey="Fang, Weiping" sort="Fang, Weiping" uniqKey="Fang W" first="Weiping" last="Fang">Weiping Fang</name>
<name sortKey="Hou, Jianan" sort="Hou, Jianan" uniqKey="Hou J" first="Jianan" last="Hou">Jianan Hou</name>
<name sortKey="Li, Wu" sort="Li, Wu" uniqKey="Li W" first="Wu" last="Li">Wu Li</name>
<name sortKey="Lv, Shuping" sort="Lv, Shuping" uniqKey="Lv S" first="Shuping" last="Lv">Shuping Lv</name>
<name sortKey="Nie, Lihong" sort="Nie, Lihong" uniqKey="Nie L" first="Lihong" last="Nie">Lihong Nie</name>
<name sortKey="Tang, Zhongjie" sort="Tang, Zhongjie" uniqKey="Tang Z" first="Zhongjie" last="Tang">Zhongjie Tang</name>
<name sortKey="Xie, Deyi" sort="Xie, Deyi" uniqKey="Xie D" first="Deyi" last="Xie">Deyi Xie</name>
<name sortKey="Yang, Xiaojie" sort="Yang, Xiaojie" uniqKey="Yang X" first="Xiaojie" last="Yang">Xiaojie Yang</name>
<name sortKey="Zhao, Fu An" sort="Zhao, Fu An" uniqKey="Zhao F" first="Fu'An" last="Zhao">Fu'An Zhao</name>
<name sortKey="Zhao, Yuanming" sort="Zhao, Yuanming" uniqKey="Zhao Y" first="Yuanming" last="Zhao">Yuanming Zhao</name>
</country>
</tree>
</affiliations>
</record>
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