Structural and Functional Analysis of the GRAS Gene Family in Grapevine Indicates a Role of GRAS Proteins in the Control of Development and Stress Responses
Identifieur interne : 001F81 ( Ncbi/Curation ); précédent : 001F80; suivant : 001F82Structural and Functional Analysis of the GRAS Gene Family in Grapevine Indicates a Role of GRAS Proteins in the Control of Development and Stress Responses
Auteurs : Jérôme Grimplet [Espagne] ; Patricia Agudelo-Romero [Portugal] ; Rita T. Teixeira [Portugal] ; Jose M. Martinez-Zapater [Espagne] ; Ana M. Fortes [Portugal]Source :
- Frontiers in Plant Science [ 1664-462X ] ; 2016.
Abstract
GRAS transcription factors are involved in many processes of plant growth and development (e.g., axillary shoot meristem formation, root radial patterning, nodule morphogenesis, arbuscular development) as well as in plant disease resistance and abiotic stress responses. However, little information is available concerning this gene family in grapevine (
Url:
DOI: 10.3389/fpls.2016.00353
PubMed: 27065316
PubMed Central: 4811876
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PMC:4811876Le document en format XML
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<series><title level="j">Frontiers in Plant Science</title>
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<front><div type="abstract" xml:lang="en"><p>GRAS transcription factors are involved in many processes of plant growth and development (e.g., axillary shoot meristem formation, root radial patterning, nodule morphogenesis, arbuscular development) as well as in plant disease resistance and abiotic stress responses. However, little information is available concerning this gene family in grapevine (<italic>Vitis vinifera</italic>
L.), an economically important woody crop. We performed a model curation of GRAS genes identified in the latest genome annotation leading to the identification of 52 genes. Gene models were improved and three new genes were identified that could be grapevine- or woody-plant specific. Phylogenetic analysis showed that GRAS genes could be classified into 13 groups that mapped on the 19 <italic>V. vinifera</italic>
chromosomes. Five new subfamilies, previously not characterized in other species, were identified. Multiple sequence alignment showed typical GRAS domain in the proteins and new motifs were also described. As observed in other species, both segmental and tandem duplications contributed significantly to the expansion and evolution of the GRAS gene family in grapevine. Expression patterns across a variety of tissues and upon abiotic and biotic conditions revealed possible divergent functions of GRAS genes in grapevine development and stress responses. By comparing the information available for tomato and grapevine GRAS genes, we identified candidate genes that might constitute conserved transcriptional regulators of both climacteric and non-climacteric fruit ripening. Altogether this study provides valuable information and robust candidate genes for future functional analysis aiming at improving the quality of fleshy fruits.</p>
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