Transcriptome Analysis of Syringa oblata Lindl. Inflorescence Identifies Genes Associated with Pigment Biosynthesis and Scent Metabolism
Identifieur interne : 001E05 ( Ncbi/Curation ); précédent : 001E04; suivant : 001E06Transcriptome Analysis of Syringa oblata Lindl. Inflorescence Identifies Genes Associated with Pigment Biosynthesis and Scent Metabolism
Auteurs : Jian Zheng [République populaire de Chine] ; Zenghui Hu [République populaire de Chine] ; Xuelian Guan [République populaire de Chine] ; Dequan Dou [République populaire de Chine] ; Guo Bai [République populaire de Chine] ; Yu Wang [République populaire de Chine] ; Yingtian Guo [République populaire de Chine] ; Wei Li [République populaire de Chine] ; Pingsheng Leng [République populaire de Chine]Source :
- PLoS ONE [ 1932-6203 ] ; 2015.
Abstract
Url:
DOI: 10.1371/journal.pone.0142542
PubMed: 26587670
PubMed Central: 4654506
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Transcriptome Analysis of <italic>Syringa oblata</italic> Lindl. Inflorescence Identifies Genes Associated with Pigment Biosynthesis and Scent Metabolism</title><author><name sortKey="Zheng, Jian" sort="Zheng, Jian" uniqKey="Zheng J" first="Jian" last="Zheng">Jian Zheng</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>College of Landscape Architecture, Beijing University of Agriculture, Beijing, 102206, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Landscape Architecture, Beijing University of Agriculture, Beijing, 102206</wicri:regionArea><wicri:noRegion>102206</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="aff002"><addr-line>Beijing Engineering Research Center of rural landscape planning and design, Beijing, 102206, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Beijing Engineering Research Center of rural landscape planning and design, Beijing, 102206</wicri:regionArea><wicri:noRegion>102206</wicri:noRegion></affiliation></author><author><name sortKey="Hu, Zenghui" sort="Hu, Zenghui" uniqKey="Hu Z" first="Zenghui" last="Hu">Zenghui Hu</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>College of Landscape Architecture, Beijing University of Agriculture, Beijing, 102206, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Landscape Architecture, Beijing University of Agriculture, Beijing, 102206</wicri:regionArea><wicri:noRegion>102206</wicri:noRegion></affiliation></author><author><name sortKey="Guan, Xuelian" sort="Guan, Xuelian" uniqKey="Guan X" first="Xuelian" last="Guan">Xuelian Guan</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>College of Landscape Architecture, Beijing University of Agriculture, Beijing, 102206, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Landscape Architecture, Beijing University of Agriculture, Beijing, 102206</wicri:regionArea><wicri:noRegion>102206</wicri:noRegion></affiliation></author><author><name sortKey="Dou, Dequan" sort="Dou, Dequan" uniqKey="Dou D" first="Dequan" last="Dou">Dequan Dou</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>College of Landscape Architecture, Beijing University of Agriculture, Beijing, 102206, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Landscape Architecture, Beijing University of Agriculture, Beijing, 102206</wicri:regionArea><wicri:noRegion>102206</wicri:noRegion></affiliation></author><author><name sortKey="Bai, Guo" sort="Bai, Guo" uniqKey="Bai G" first="Guo" last="Bai">Guo Bai</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>College of Landscape Architecture, Beijing University of Agriculture, Beijing, 102206, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Landscape Architecture, Beijing University of Agriculture, Beijing, 102206</wicri:regionArea><wicri:noRegion>102206</wicri:noRegion></affiliation></author><author><name sortKey="Wang, Yu" sort="Wang, Yu" uniqKey="Wang Y" first="Yu" last="Wang">Yu Wang</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>College of Landscape Architecture, Beijing University of Agriculture, Beijing, 102206, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Landscape Architecture, Beijing University of Agriculture, Beijing, 102206</wicri:regionArea><wicri:noRegion>102206</wicri:noRegion></affiliation></author><author><name sortKey="Guo, Yingtian" sort="Guo, Yingtian" uniqKey="Guo Y" first="Yingtian" last="Guo">Yingtian Guo</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>College of Landscape Architecture, Beijing University of Agriculture, Beijing, 102206, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Landscape Architecture, Beijing University of Agriculture, Beijing, 102206</wicri:regionArea><wicri:noRegion>102206</wicri:noRegion></affiliation></author><author><name sortKey="Li, Wei" sort="Li, Wei" uniqKey="Li W" first="Wei" last="Li">Wei Li</name><affiliation wicri:level="1"><nlm:aff id="aff003"><addr-line>College of Landscape Architecture and Forestry, Qingdao Agricultural University, Qingdao, 266100, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Landscape Architecture and Forestry, Qingdao Agricultural University, Qingdao, 266100</wicri:regionArea><wicri:noRegion>266100</wicri:noRegion></affiliation></author><author><name sortKey="Leng, Pingsheng" sort="Leng, Pingsheng" uniqKey="Leng P" first="Pingsheng" last="Leng">Pingsheng Leng</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>College of Landscape Architecture, Beijing University of Agriculture, Beijing, 102206, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Landscape Architecture, Beijing University of Agriculture, Beijing, 102206</wicri:regionArea><wicri:noRegion>102206</wicri:noRegion></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">26587670</idno><idno type="pmc">4654506</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4654506</idno><idno type="RBID">PMC:4654506</idno><idno type="doi">10.1371/journal.pone.0142542</idno><date when="2015">2015</date><idno type="wicri:Area/Pmc/Corpus">000199</idno><idno type="wicri:Area/Pmc/Curation">000199</idno><idno type="wicri:Area/Pmc/Checkpoint">000310</idno><idno type="wicri:Area/Ncbi/Merge">001E05</idno><idno type="wicri:Area/Ncbi/Curation">001E05</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Transcriptome Analysis of <italic>Syringa oblata</italic> Lindl. Inflorescence Identifies Genes Associated with Pigment Biosynthesis and Scent Metabolism</title><author><name sortKey="Zheng, Jian" sort="Zheng, Jian" uniqKey="Zheng J" first="Jian" last="Zheng">Jian Zheng</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>College of Landscape Architecture, Beijing University of Agriculture, Beijing, 102206, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Landscape Architecture, Beijing University of Agriculture, Beijing, 102206</wicri:regionArea><wicri:noRegion>102206</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="aff002"><addr-line>Beijing Engineering Research Center of rural landscape planning and design, Beijing, 102206, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Beijing Engineering Research Center of rural landscape planning and design, Beijing, 102206</wicri:regionArea><wicri:noRegion>102206</wicri:noRegion></affiliation></author><author><name sortKey="Hu, Zenghui" sort="Hu, Zenghui" uniqKey="Hu Z" first="Zenghui" last="Hu">Zenghui Hu</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>College of Landscape Architecture, Beijing University of Agriculture, Beijing, 102206, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Landscape Architecture, Beijing University of Agriculture, Beijing, 102206</wicri:regionArea><wicri:noRegion>102206</wicri:noRegion></affiliation></author><author><name sortKey="Guan, Xuelian" sort="Guan, Xuelian" uniqKey="Guan X" first="Xuelian" last="Guan">Xuelian Guan</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>College of Landscape Architecture, Beijing University of Agriculture, Beijing, 102206, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Landscape Architecture, Beijing University of Agriculture, Beijing, 102206</wicri:regionArea><wicri:noRegion>102206</wicri:noRegion></affiliation></author><author><name sortKey="Dou, Dequan" sort="Dou, Dequan" uniqKey="Dou D" first="Dequan" last="Dou">Dequan Dou</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>College of Landscape Architecture, Beijing University of Agriculture, Beijing, 102206, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Landscape Architecture, Beijing University of Agriculture, Beijing, 102206</wicri:regionArea><wicri:noRegion>102206</wicri:noRegion></affiliation></author><author><name sortKey="Bai, Guo" sort="Bai, Guo" uniqKey="Bai G" first="Guo" last="Bai">Guo Bai</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>College of Landscape Architecture, Beijing University of Agriculture, Beijing, 102206, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Landscape Architecture, Beijing University of Agriculture, Beijing, 102206</wicri:regionArea><wicri:noRegion>102206</wicri:noRegion></affiliation></author><author><name sortKey="Wang, Yu" sort="Wang, Yu" uniqKey="Wang Y" first="Yu" last="Wang">Yu Wang</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>College of Landscape Architecture, Beijing University of Agriculture, Beijing, 102206, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Landscape Architecture, Beijing University of Agriculture, Beijing, 102206</wicri:regionArea><wicri:noRegion>102206</wicri:noRegion></affiliation></author><author><name sortKey="Guo, Yingtian" sort="Guo, Yingtian" uniqKey="Guo Y" first="Yingtian" last="Guo">Yingtian Guo</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>College of Landscape Architecture, Beijing University of Agriculture, Beijing, 102206, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Landscape Architecture, Beijing University of Agriculture, Beijing, 102206</wicri:regionArea><wicri:noRegion>102206</wicri:noRegion></affiliation></author><author><name sortKey="Li, Wei" sort="Li, Wei" uniqKey="Li W" first="Wei" last="Li">Wei Li</name><affiliation wicri:level="1"><nlm:aff id="aff003"><addr-line>College of Landscape Architecture and Forestry, Qingdao Agricultural University, Qingdao, 266100, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Landscape Architecture and Forestry, Qingdao Agricultural University, Qingdao, 266100</wicri:regionArea><wicri:noRegion>266100</wicri:noRegion></affiliation></author><author><name sortKey="Leng, Pingsheng" sort="Leng, Pingsheng" uniqKey="Leng P" first="Pingsheng" last="Leng">Pingsheng Leng</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>College of Landscape Architecture, Beijing University of Agriculture, Beijing, 102206, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Landscape Architecture, Beijing University of Agriculture, Beijing, 102206</wicri:regionArea><wicri:noRegion>102206</wicri:noRegion></affiliation></author></analytic><series><title level="j">PLoS ONE</title><idno type="eISSN">1932-6203</idno><imprint><date when="2015">2015</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p><italic>Syringa oblata</italic> Lindl. is a woody ornamental plant with high economic value and characteristics that include early flowering, multiple flower colors, and strong fragrance. Despite a long history of cultivation, the genetics and molecular biology of <italic>S</italic>. <italic>oblata</italic> are poorly understood. Transcriptome and expression profiling data are needed to identify genes and to better understand the biological mechanisms of floral pigments and scents in this species. Nine cDNA libraries were obtained from three replicates of three developmental stages: inflorescence with enlarged flower buds not protruded, inflorescence with corolla lobes not displayed, and inflorescence with flowers fully opened and emitting strong fragrance. Using the Illumina RNA-Seq technique, 319,425,972 clean reads were obtained and were assembled into 104,691 final unigenes (average length of 853 bp), 41.75% of which were annotated in the NCBI non-redundant protein database. Among the annotated unigenes, 36,967 were assigned to gene ontology categories and 19,956 were assigned to eukaryoticorthologous groups. Using the Kyoto Encyclopedia of Genes and Genomes pathway database, 12,388 unigenes were sorted into 286 pathways. Based on these transcriptomic data, we obtained a large number of candidate genes that were differentially expressed at different flower stages and that were related to floral pigment biosynthesis and fragrance metabolism. This comprehensive transcriptomic analysis provides fundamental information on the genes and pathways involved in flower secondary metabolism and development in <italic>S</italic>. <italic>oblata</italic>, providing a useful database for further research on <italic>S</italic>. <italic>oblata</italic> and other plants of genus <italic>Syringa</italic>.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Huang, Jx" uniqKey="Huang J">JX Huang</name></author><author><name sortKey="Wang, Ls" uniqKey="Wang L">LS Wang</name></author><author><name sortKey="Li, Xm" uniqKey="Li X">XM Li</name></author><author><name sortKey="Lu, Yq" uniqKey="Lu Y">YQ Lu</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Shirley, Bw" uniqKey="Shirley B">BW Shirley</name></author><author><name sortKey="Kubasek, Wl" uniqKey="Kubasek W">WL Kubasek</name></author><author><name sortKey="Storz, G" uniqKey="Storz G">G 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Farhi</name></author><author><name sortKey="Albo, B" uniqKey="Albo B">B Albo</name></author><author><name sortKey="Cna Ani, A" uniqKey="Cna Ani A">A Cna'ani</name></author><author><name sortKey="Zvi, Mmb" uniqKey="Zvi M">MMB Zvi</name></author><author><name sortKey="Masci, T" uniqKey="Masci T">T Masci</name></author></analytic></biblStruct></listBibl></div1></back></TEI></record>Pour manipuler ce document sous Unix (Dilib)
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