Identification of MiRNA from Eggplant (Solanum melongena L.) by Small RNA Deep Sequencing and Their Response to Verticillium dahliae Infection
Identifieur interne : 000E20 ( Main/Merge ); précédent : 000E19; suivant : 000E21Identification of MiRNA from Eggplant (Solanum melongena L.) by Small RNA Deep Sequencing and Their Response to Verticillium dahliae Infection
Auteurs : Liu Yang ; Dengwei Jue ; Wang Li ; Ruijie Zhang ; Min Chen ; Qing YangSource :
- PLoS ONE [ 1932-6203 ] ; 2013.
Abstract
MiRNAs are a class of non-coding small RNAs that play important roles in the regulation of gene expression. Although plant miRNAs have been extensively studied in model systems, less is known in other plants with limited genome sequence data, including eggplant (
Url:
DOI: 10.1371/journal.pone.0072840
PubMed: 24015279
PubMed Central: 3754920
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Identification of MiRNA from Eggplant (<italic>Solanum melongena</italic> L.) by Small RNA Deep Sequencing and Their Response to <italic>Verticillium dahliae</italic> Infection</title><author><name sortKey="Yang, Liu" sort="Yang, Liu" uniqKey="Yang L" first="Liu" last="Yang">Liu Yang</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Jue, Dengwei" sort="Jue, Dengwei" uniqKey="Jue D" first="Dengwei" last="Jue">Dengwei Jue</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Li, Wang" sort="Li, Wang" uniqKey="Li W" first="Wang" last="Li">Wang Li</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Zhang, Ruijie" sort="Zhang, Ruijie" uniqKey="Zhang R" first="Ruijie" last="Zhang">Ruijie Zhang</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Chen, Min" sort="Chen, Min" uniqKey="Chen M" first="Min" last="Chen">Min Chen</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Yang, Qing" sort="Yang, Qing" uniqKey="Yang Q" first="Qing" last="Yang">Qing Yang</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">24015279</idno><idno type="pmc">3754920</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3754920</idno><idno type="RBID">PMC:3754920</idno><idno type="doi">10.1371/journal.pone.0072840</idno><date when="2013">2013</date><idno type="wicri:Area/Pmc/Corpus">001158</idno><idno type="wicri:Area/Pmc/Curation">001157</idno><idno type="wicri:Area/Pmc/Checkpoint">000A49</idno><idno type="wicri:Area/Ncbi/Merge">001415</idno><idno type="wicri:Area/Ncbi/Curation">001415</idno><idno type="wicri:Area/Ncbi/Checkpoint">001415</idno><idno type="wicri:Area/Main/Merge">000E20</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Identification of MiRNA from Eggplant (<italic>Solanum melongena</italic> L.) by Small RNA Deep Sequencing and Their Response to <italic>Verticillium dahliae</italic> Infection</title><author><name sortKey="Yang, Liu" sort="Yang, Liu" uniqKey="Yang L" first="Liu" last="Yang">Liu Yang</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Jue, Dengwei" sort="Jue, Dengwei" uniqKey="Jue D" first="Dengwei" last="Jue">Dengwei Jue</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Li, Wang" sort="Li, Wang" uniqKey="Li W" first="Wang" last="Li">Wang Li</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Zhang, Ruijie" sort="Zhang, Ruijie" uniqKey="Zhang R" first="Ruijie" last="Zhang">Ruijie Zhang</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Chen, Min" sort="Chen, Min" uniqKey="Chen M" first="Min" last="Chen">Min Chen</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Yang, Qing" sort="Yang, Qing" uniqKey="Yang Q" first="Qing" last="Yang">Qing Yang</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author></analytic><series><title level="j">PLoS ONE</title><idno type="eISSN">1932-6203</idno><imprint><date when="2013">2013</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>MiRNAs are a class of non-coding small RNAs that play important roles in the regulation of gene expression. Although plant miRNAs have been extensively studied in model systems, less is known in other plants with limited genome sequence data, including eggplant (<italic>Solanum melongena</italic> L.). To identify miRNAs in eggplant and their response to <italic>Verticillium dahliae</italic> infection, a fungal pathogen for which clear understanding of infection mechanisms and effective cure methods are currently lacking, we deep-sequenced two small RNA (sRNA) libraries prepared from mock-infected and infected seedlings of eggplants. Specifically, 30,830,792 reads produced 7,716,328 unique miRNAs representing 99 known miRNA families that have been identified in other plant species. Two novel putative miRNAs were predicted with eggplant ESTs. The potential targets of the identified known and novel miRNAs were also predicted based on sequence homology search. It was observed that the length distribution of obtained sRNAs and the expression of 6 miRNA families were obviously different between the two libraries. These results provide a framework for further analysis of miRNAs and their role in regulating plant response to fungal infection and Verticillium wilt in particular.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Phillips, Jr" uniqKey="Phillips J">JR Phillips</name></author><author><name sortKey="Dalmay, T" uniqKey="Dalmay T">T Dalmay</name></author><author><name sortKey="Bartels, D" uniqKey="Bartels D">D Bartels</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Lu, C" uniqKey="Lu C">C Lu</name></author><author><name sortKey="Tej, Ss" uniqKey="Tej S">SS Tej</name></author><author><name sortKey="Luo, S" uniqKey="Luo S">S Luo</name></author><author><name sortKey="Haudenschild, Cd" uniqKey="Haudenschild C">CD Haudenschild</name></author><author><name sortKey="Meyers, Bc" uniqKey="Meyers B">BC Meyers</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Vaucheret, H" 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